Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003655

Physical Location & Seq

Genomic Coordinates Forward (+)

28350616 .. 28354798

Gene Structure 4183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG247400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGATTCAAGTGGATCTTTTGGAGTTTCATAAAACCCTACAATGCAGTTGCTGCAGGAGGAGTGACAACATACCATTGCCATCAATGCCTGATACCTCTATTATGTACACTCTGGCTCAGGAGCATGGCGATCTTATCAATCTTCATGACTGGTTCCAGTCTTTCAAAACCATTGTCATTCAGTACAGCAGAAAGGGGACAAGCAAACTGGAAAAGTCCCCACTTAAGAAAAGAAAGGAAAAGAATGAATCTGAAAACAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000781 GO:0000784 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005656 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006267 GO:0006270 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0016043 GO:0022402 GO:0022607 GO:0022622 GO:0031261 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0032993 GO:0033260 GO:0034285 GO:0034622 GO:0034641 GO:0034645 GO:0036387 GO:0036388 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0065004 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090696 GO:0097159 GO:0098687 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1902299 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC3_N

Protein Analysis

88

Amino Acids

10.29

Weight (kDa)

8.84

Isoelectric Point (pI)

56.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_ORC	PF18137	2 - 84	1e-16	Origin recognition complex winged helix C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16690 AT5G16690
fragaria_vesca	FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260
malus_domestica	MD01G1239300.v1.1 MD07G1032700.v1.1
prunus_persica	Prupe.2G329300_v2.0.a1
pyrus_communis	pycom07g02310
rosa_chinensis	RchiOBHm_Chr1g0384611 RchiOBHm_Chr6g0290011
rosa_laevigata	RLG00000000745 RLG00000026027
rosa_multiflora	Rmu_co8125142.1_g000001 Rmu_co8285713.1_g000001 Rmu_sc0012136.1_g000030
rosa_roxburghii	Rroxscaffold_4G00276520
rosa_rugosa	Rorug01G0450000 Rorug01G0450100
rosa_samantha	Rh1AG348300 Rh1AG474600 Rh1BG432700 Rh1CG445900 Rh1DG465300 Rh5DG247400
rosa_wichuraiana	Rw1G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	107, 185
AflII	CTTAAG	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	8, 166
AlwI	GGATC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	51
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	88
BfmI	CTRYAG	1 cut(s)	52
BfrI	CTTAAG	1 cut(s)	224
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	117
Bse1I	ACTGG	3 cut(s)	155, 157, 213
Bse3DI	GCAATG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	3 cut(s)	155, 157, 213
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	38
BslFI	GGGAC	2 cut(s)	202, 211
BsmFI	GGGAC	2 cut(s)	202, 211
Bsp1407I	TGTACA	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	13, 130
BspCNI	CTCAG	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	155
BspMAI	CTGCAG	1 cut(s)	56
BspPI	GGATC	1 cut(s)	21
BspTI	CTTAAG	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	74
BsrGI	TGTACA	1 cut(s)	105
BsrI	ACTGG	3 cut(s)	155, 157, 213
BssMI	GATC	2 cut(s)	13, 130
BstAFI	CTTAAG	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	51
BstAUI	TGTACA	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	117
BstKTI	GATC	2 cut(s)	16, 133
BstMBI	GATC	2 cut(s)	13, 130
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 85
BstSFI	CTRYAG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
CaiI	CAGNNNCTG	1 cut(s)	51
CciI	TCATGA	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	106, 184
CviAII	CATG	2 cut(s)	125, 146
CviJI	RGCY	1 cut(s)	116
CviKI_1	RGCY	1 cut(s)	116
CviQI	GTAC	2 cut(s)	106, 184
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	15, 132
DpnII	GATC	2 cut(s)	13, 130
FaeI	CATG	2 cut(s)	128, 149
FaiI	YATR	5 cut(s)	30, 71, 104, 126, 147
FalI	AAGNNNNNCTT	1 cut(s)	32
FaqI	GGGAC	2 cut(s)	202, 211
FatI	CATG	2 cut(s)	124, 145
Fnu4HI	GCNGC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	128, 149
HinfI	GANTC	2 cut(s)	4, 248
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	119, 146
Hpy8I	GTNNAC	1 cut(s)	108
HpyCH4V	TGCA	2 cut(s)	45, 54
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 85
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	128, 149
Kzo9I	GATC	2 cut(s)	13, 130
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	7 cut(s)	40, 98, 102, 104, 136, 170, 194
Lsp1109I	GCAGC	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	2 cut(s)	15, 132
MboI	GATC	2 cut(s)	13, 130
MboII	GAAGA	1 cut(s)	134
MflI	RGATCY	1 cut(s)	13
MnlI	CCTC	2 cut(s)	51, 106
MseI	TTAA	1 cut(s)	225
MspCI	CTTAAG	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	51, 85
NdeII	GATC	2 cut(s)	13, 130
NlaIII	CATG	2 cut(s)	128, 149
NlaIV	GGNNCC	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	62
PagI	TCATGA	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	4, 248
PkrI	GCNGC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	2 cut(s)	107, 185
RsaNI	GTAC	2 cut(s)	106, 184
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	2 cut(s)	13, 130
SetI	ASST	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
TatI	WGTACW	2 cut(s)	105, 183
TfiI	GAWTC	2 cut(s)	4, 248
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	3 cut(s)	17, 134, 261
Vha464I	CTTAAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.