Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003655

Physical Location & Seq

Genomic Coordinates Forward (+)

2710487 .. 2718074

Gene Structure 7588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1032700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGCGGCTTCATCTGCAAGTGCGGGTGATTCACCGCCTCCATCAAGTCCCAATGCCGCCCAAAACAACCTCCAGCATTTCTTCATCCTTCACAAAGCATCTGAAAAATCAACTTCGATTGGGAAACCCCGAAAGAGGCTTGACCTGTGCCCAACAAAGCTTAAGGAAGGCGACGAGGGCTGCTTGAGAATGGAAGCTTTTCAGTTAGTTTGGTCAGGAATCGAATCCTCCATCAAGGATGTTCTGAGGAATATGAATGCTCATGTTTTCAACCAGATACACAGCTGGGTATGCGATTCCTTCGGTGCTATCAAGCCAATTGCTCCCTTCTCTTCTCCTCTCGGCCCGTTTCCGATTGTTACCCACGCTACTTGTAGCGCACAGCTCTTCACTGCACTCCTTCTCACCAAGAATATGGAGTCTGTTGACGATTTCTCGACATTTCAAGAGCTTGGCCTCTGCCTGAAATCTCATGGATGCCATGTCGCTAGCCTTTCCTCCCTCGACTTTTCACCAAAAAATGGGATTGCTGGTTCTATTTCAAGTTTATTGAGACAGTTTTTGATACGGTCTTTCGATGCAGCTGATATGTCCATATTGGCATCATGGTACAGCCAGCATGGAAATTATGGTTCTCCGGTGGTTGTCATTATAGACGACATGGAAAGATGTTCTATTCCTGTCTTGTCTGATTTCATTCTTATGTTGAGTGAATGGGTTGTCAAGATCCCAGTCATTTTAATAATGGGAGTTGCAACAACATTGGATGCCCCAAGCAACATACTTCCTTCAAATGTGCTGAAGAAGTTGTGCCCTTGCAAGTTCACGCTGGGATCACCGGCTGAGAGGATGGATGCAGTTGTTGAGGCTGCTCTTGTGAGGCAGTGTTCTAGTTTCGCTGTTGGTCACAAGGTGGCTGTCTTTCTGCGAAACTACTTCTTAAATCAGGACGGTACATTGACATCTTTTCTTAGGGCTTTGAAGATAGCCTGTGTCCAACATTTCTCCTCGGAGCCTTTAAGACTCATACTTGGTGGGTTGCTTGTTAAAGAAGACACCAAGGGATCTCAGAATGAGAAAGTGATCAAGTGTGCTTCCCAAGTTTTATGTCATGGAAGGGATCAAATGGCTGAACAAACTGATATCAATATAGCTCATGGTTTAACAGAGTTGAAGAGATTGCAGATGCTCTGGAGCACTGTTGTTCTGTGCTTATATGAAGCTGGGAAGTGCGACAAAGTTCAATTGCTAGATTTATTTTGCGAGGCGCTTGATCCAGATGTTTACAACTCATTCGCTTCTGATAATGATAATCGCACTGGATTGGGAAAAAAATTTGTTACATCTTTGTCAAATGATCACTGTATGCTTGAACAACATTTGAGCTCCCGAAAGGGACGCCTTATTTGTCAGGTAGTTCGCAAAGTGAGGGATCTTCCTGCAGCATTGCTCTGTCAGTTGCTCAAAAGTTGGGAAGTTCTCACTGTCAATGTTCTTGAGATTCATGACATGATAAAGGAACTGCAGTCCTTATTGAAATTTGAGGAAGAAAGTTGCAAACCAGATTTGACTGACATATCCAAGAGGCATATATCTCACAGTGGAAAAGCTGCTATATTAATTGATTGCATGGTTAGGTATTTCATGATGCCAATTGAGTGCATGCATCTTCATGAGATTTTCTGCTTTAGAAATGTTGAAAAACTTCAATCGGCTTTAATTGGCGACTCGAGGAAGAGGATTCAAGTGGATCTTTTGGAGTTCCATAAAATCCTAAGATGCAGTTGCTGCAGTAAGATTGGCAACATTCCATTGTCTCCCATGCCTGATACCTCAATTGTGTATACCCTGGCTCAGGAGCATGGGGATCTTATCAACCTTCATGACTGGTTCCAGTCTTTCAAGACAATTGCTATTCCGCCCAAGAGGAAAGCGAAATGCAAGTTAAAGCAGTCCCCACTACCCAAAAAAAGAAAGGAAAGCAATGACTCTGAAAACAAGAGTGAAGCATCTATTCAAGCACGATTTTGCAGGGCAATTACAGAACTACAGATTACAGGCCTCATTCGGATGCCCAGCAAAAAACGTCGTGACTGTGTGCAGAGAGTGGCCTTTGGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000781 GO:0000784 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005656 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006267 GO:0006270 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0016043 GO:0022402 GO:0022607 GO:0022622 GO:0031261 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0032993 GO:0033260 GO:0034285 GO:0034622 GO:0034641 GO:0034645 GO:0036387 GO:0036388 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0065004 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090696 GO:0097159 GO:0098687 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1902299 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC3_N

Protein Analysis

708

Amino Acids

78.75

Weight (kDa)

8.58

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC3_N	PF07034	24 - 340	1e-58	Origin recognition complex (ORC) subunit 3 N-terminus
WHD_ORC	PF18137	578 - 705	4.6e-27	Origin recognition complex winged helix C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16690 AT5G16690
fragaria_vesca	FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260
malus_domestica	MD01G1239300.v1.1 MD07G1032700.v1.1
prunus_persica	Prupe.2G329300_v2.0.a1
pyrus_communis	pycom07g02310
rosa_chinensis	RchiOBHm_Chr1g0384611 RchiOBHm_Chr6g0290011
rosa_laevigata	RLG00000000745 RLG00000026027
rosa_multiflora	Rmu_co8125142.1_g000001 Rmu_co8285713.1_g000001 Rmu_sc0012136.1_g000030
rosa_roxburghii	Rroxscaffold_4G00276520
rosa_rugosa	Rorug01G0450000 Rorug01G0450100
rosa_samantha	Rh1AG348300 Rh1AG474600 Rh1BG432700 Rh1CG445900 Rh1DG465300 Rh5DG247400
rosa_wichuraiana	Rw1G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	1844
AciI	CCGC	5 cut(s)	5, 23, 35, 57, 1919
AclWI	GGATC	8 cut(s)	721, 841, 1072, 1128, 1268, 1440, 1758, 1875
AcsI	RAATTY	2 cut(s)	1334, 1538
AcuI	CTGAAG	1 cut(s)	821
AcyI	GRCGYC	1 cut(s)	1399
AdeI	CACNNNGTG	1 cut(s)	913
AfaI	GTAC	2 cut(s)	611, 955
AfiI	CCNNNNNNNGG	3 cut(s)	135, 521, 1855
AflII	CTTAAG	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	1848
AloI	GAACNNNNNNTCC	2 cut(s)	517, 549
Alw21I	GWGCWC	2 cut(s)	1199, 1388
Alw26I	GTCTC	2 cut(s)	547, 1821
AlwI	GGATC	8 cut(s)	721, 841, 1072, 1128, 1268, 1440, 1758, 1875
AlwNI	CAGNNNCTG	1 cut(s)	1788
Ama87I	CYCGRG	1 cut(s)	1729
AoxI	GGCC	4 cut(s)	343, 454, 2059, 2109
ApeKI	GCWGC	6 cut(s)	180, 581, 869, 1442, 1610, 1788
ApoI	RAATTY	2 cut(s)	1334, 1538
ArsI	GACNNNNNNTTYG	2 cut(s)	1389, 1421
AseI	ATTAAT	1 cut(s)	1619
Asp700I	GAANNNNTTC	2 cut(s)	198, 1704
AspLEI	GCGC	2 cut(s)	380, 1270
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	5 cut(s)	24, 38, 397, 504, 828
AsuNHI	GCTAGC	1 cut(s)	488
AvaI	CYCGRG	1 cut(s)	1729
BaeGI	GKGCMC	2 cut(s)	152, 815
BanII	GRGCYC	1 cut(s)	1388
BbsI	GAAGAC	1 cut(s)	1059
Bbv12I	GWGCWC	2 cut(s)	1199, 1388
BbvI	GCAGC	6 cut(s)	167, 593, 856, 1454, 1597, 1775
BccI	CCATC	3 cut(s)	49, 239, 844
BciT130I	CCWGG	1 cut(s)	1850
BclI	TGATCA	2 cut(s)	1083, 1357
BcoDI	GTCTC	2 cut(s)	547, 1821
BfaI	CTAG	3 cut(s)	489, 891, 1250
BfmI	CTRYAG	4 cut(s)	1440, 1523, 1789, 2048
BfoI	RGCGCY	1 cut(s)	1271
BfrI	CTTAAG	1 cut(s)	161
BisI	GCNGC	8 cut(s)	6, 57, 181, 582, 870, 1443, 1611, 1789
BlsI	GCNGC	8 cut(s)	7, 58, 182, 583, 871, 1444, 1612, 1790
Bme1390I	CCNGG	1 cut(s)	1850
BmeT110I	CYCGRG	1 cut(s)	1729
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	1014, 1892
BmrFI	CCNGG	1 cut(s)	1850
BmrI	ACTGGG	1 cut(s)	725
BmtI	GCTAGC	1 cut(s)	492
BmuI	ACTGGG	1 cut(s)	725
BpiI	GAAGAC	1 cut(s)	1059
BpmI	CTGGAG	2 cut(s)	56, 1213
Bpu10I	CCTNAGC	1 cut(s)	1854
BpuEI	CTTGAG	2 cut(s)	205, 1517
BsaHI	GRCGYC	1 cut(s)	1399
BsaJI	CCNNGG	3 cut(s)	1008, 1059, 1848
BsaWI	WCCGGW	1 cut(s)	637
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 521, 1855
Bse118I	RCCGGY	1 cut(s)	838
Bse1I	ACTGG	4 cut(s)	731, 1324, 1892, 1894
Bse3DI	GCAATG	2 cut(s)	1445, 1990
BseBI	CCWGG	1 cut(s)	1850
BseDI	CCNNGG	3 cut(s)	1008, 1059, 1848
BseGI	GGATG	7 cut(s)	84, 244, 482, 772, 855, 859, 2076
BseLI	CCNNNNNNNGG	3 cut(s)	135, 521, 1855
BseMI	GCAATG	2 cut(s)	1445, 1990
BseMII	CTCAG	4 cut(s)	236, 834, 1082, 1868
BseNI	ACTGG	4 cut(s)	731, 1324, 1892, 1894
BseRI	GAGGAG	2 cut(s)	327, 997
BseSI	GKGCMC	2 cut(s)	152, 815
BseXI	GCAGC	6 cut(s)	167, 593, 856, 1454, 1597, 1775
BseYI	CCCAGC	4 cut(s)	285, 829, 1223, 2075
BsgI	GTGCAG	2 cut(s)	378, 2120
BshFI	GGCC	4 cut(s)	345, 456, 2061, 2111
BsiHKAI	GWGCWC	2 cut(s)	1199, 1388
BsiHKCI	CYCGRG	1 cut(s)	1729
BsiSI	CCGG	2 cut(s)	638, 839
BslFI	GGGAC	3 cut(s)	33, 1410, 1939
BslI	CCNNNNNNNGG	3 cut(s)	135, 521, 1855
BsmAI	GTCTC	2 cut(s)	547, 1821
BsmFI	GGGAC	3 cut(s)	33, 1410, 1939
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	4 cut(s)	345, 456, 2061, 2111
BsoBI	CYCGRG	1 cut(s)	1729
Bsp1286I	GDGCHC	4 cut(s)	152, 815, 1199, 1388
BspACI	CCGC	5 cut(s)	5, 23, 35, 57, 1919
BspANI	GGCC	4 cut(s)	345, 456, 2061, 2111
BspCNI	CTCAG	4 cut(s)	237, 835, 1081, 1867
BspHI	TCATGA	4 cut(s)	1504, 1644, 1672, 1882
BspLI	GGNNCC	2 cut(s)	1014, 1892
BspMAI	CTGCAG	3 cut(s)	1444, 1527, 1793
BspOI	GCTAGC	1 cut(s)	492
BspPI	GGATC	8 cut(s)	721, 841, 1072, 1128, 1268, 1440, 1758, 1875
BspQI	GCTCTTC	1 cut(s)	392
BspTI	CTTAAG	1 cut(s)	161
BsrDI	GCAATG	2 cut(s)	1445, 1990
BsrFI	RCCGGY	1 cut(s)	838
BsrI	ACTGG	4 cut(s)	731, 1324, 1892, 1894
BssAI	RCCGGY	1 cut(s)	838
BssECI	CCNNGG	3 cut(s)	1008, 1059, 1848
BssNAI	GTATAC	1 cut(s)	1845
BssNI	GRCGYC	1 cut(s)	1399
BssT1I	CCWWGG	1 cut(s)	1059
Bst1107I	GTATAC	1 cut(s)	1845
Bst2UI	CCWGG	1 cut(s)	1850
Bst4CI	ACNGT	8 cut(s)	558, 570, 953, 1201, 1364, 1486, 1601, 2096
Bst6I	CTCTTC	4 cut(s)	337, 392, 1169, 1730
BstACI	GRCGYC	1 cut(s)	1399
BstAFI	CTTAAG	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	1788
BstC8I	GCNNGC	3 cut(s)	490, 617, 1664
BstDEI	CTNAG	6 cut(s)	245, 843, 971, 1068, 1775, 1854
BstENI	CCTNNNNNAGG	1 cut(s)	1853
BstF5I	GGATG	7 cut(s)	84, 244, 482, 772, 855, 859, 2076
BstH2I	RGCGCY	1 cut(s)	1271
BstHHI	GCGC	2 cut(s)	380, 1270
BstMAI	GTCTC	2 cut(s)	547, 1821
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 177, 291, 1788
BstNI	CCWGG	1 cut(s)	1850
BstNSI	RCATGY	1 cut(s)	1666
BstSCI	CCNGG	1 cut(s)	1848
BstSFI	CTRYAG	4 cut(s)	1440, 1523, 1789, 2048
BstSLI	GKGCMC	2 cut(s)	152, 815
BstV1I	GCAGC	6 cut(s)	167, 593, 856, 1454, 1597, 1775
BstV2I	GAAGAC	1 cut(s)	1059
BstX2I	RGATCY	5 cut(s)	726, 1064, 1432, 1750, 1867
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	5 cut(s)	726, 1064, 1432, 1750, 1867
BstZ17I	GTATAC	1 cut(s)	1845
BsuRI	GGCC	4 cut(s)	345, 456, 2061, 2111
BtsCI	GGATG	7 cut(s)	84, 244, 482, 772, 855, 859, 2076
BtsI	GCAGTG	2 cut(s)	390, 890
BtsIMutI	CAGTG	7 cut(s)	390, 890, 1197, 1317, 1360, 1482, 1606
Cac8I	GCNNGC	3 cut(s)	490, 617, 1664
CaiI	CAGNNNCTG	1 cut(s)	1788
CciI	TCATGA	4 cut(s)	1504, 1644, 1672, 1882
CfoI	GCGC	2 cut(s)	380, 1270
Cfr10I	RCCGGY	1 cut(s)	838
Cfr13I	GGNCC	1 cut(s)	344
CseI	GACGC	1 cut(s)	1407
Csp6I	GTAC	2 cut(s)	610, 954
CspCI	CAANNNNNGTGG	2 cut(s)	353, 388
CviQI	GTAC	2 cut(s)	610, 954
DdeI	CTNAG	6 cut(s)	245, 843, 971, 1068, 1775, 1854
DraIII	CACNNNGTG	1 cut(s)	913
Eam1104I	CTCTTC	4 cut(s)	337, 392, 1169, 1730
EarI	CTCTTC	4 cut(s)	337, 392, 1169, 1730
EciI	GGCGGA	1 cut(s)	1908
Ecl136II	GAGCTC	1 cut(s)	1386
Eco130I	CCWWGG	1 cut(s)	1059
Eco147I	AGGCCT	1 cut(s)	2061
Eco24I	GRGCYC	1 cut(s)	1388
Eco32I	GATATC	1 cut(s)	1144
Eco53kI	GAGCTC	1 cut(s)	1386
Eco57I	CTGAAG	1 cut(s)	821
Eco88I	CYCGRG	1 cut(s)	1729
EcoICRI	GAGCTC	1 cut(s)	1386
EcoNI	CCTNNNNNAGG	1 cut(s)	1853
EcoRII	CCWGG	1 cut(s)	1848
EcoRV	GATATC	1 cut(s)	1144
EcoT14I	CCWWGG	1 cut(s)	1059
EcoT22I	ATGCAT	1 cut(s)	1668
EcoT38I	GRGCYC	1 cut(s)	1388
ErhI	CCWWGG	1 cut(s)	1059
FalI	AAGNNNNNCTT	2 cut(s)	1737, 1769
FaqI	GGGAC	3 cut(s)	33, 1410, 1939
FauI	CCCGC	1 cut(s)	16
FbaI	TGATCA	2 cut(s)	1083, 1357
FblI	GTMKAC	1 cut(s)	1844
Fnu4HI	GCNGC	8 cut(s)	6, 57, 181, 582, 870, 1443, 1611, 1789
FokI	GGATG	7 cut(s)	71, 251, 489, 779, 862, 866, 2083
FriOI	GRGCYC	1 cut(s)	1388
Fsp4HI	GCNGC	8 cut(s)	6, 57, 181, 582, 870, 1443, 1611, 1789
FspBI	CTAG	3 cut(s)	489, 891, 1250
GlaI	GCGC	2 cut(s)	379, 1269
GluI	GCNGC	8 cut(s)	6, 57, 181, 582, 870, 1443, 1611, 1789
GsaI	CCCAGC	4 cut(s)	289, 833, 1227, 2079
GsuI	CTGGAG	2 cut(s)	56, 1213
HaeII	RGCGCY	1 cut(s)	1271
HaeIII	GGCC	4 cut(s)	345, 456, 2061, 2111
HapII	CCGG	2 cut(s)	638, 839
HgaI	GACGC	1 cut(s)	1407
HhaI	GCGC	2 cut(s)	380, 1270
Hin1I	GRCGYC	1 cut(s)	1399
Hin6I	GCGC	2 cut(s)	378, 1268
HinP1I	GCGC	2 cut(s)	378, 1268
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	2 cut(s)	158, 195
HpaII	CCGG	2 cut(s)	638, 839
HphI	GGTGA	5 cut(s)	24, 38, 397, 504, 828
Hpy166II	GTNNAC	4 cut(s)	427, 825, 1285, 1845
Hpy8I	GTNNAC	4 cut(s)	427, 825, 1285, 1845
Hpy99I	CGWCG	2 cut(s)	176, 2091
HpyAV	CCTTC	8 cut(s)	98, 161, 310, 337, 410, 798, 1110, 1889
HpyCH4III	ACNGT	8 cut(s)	558, 570, 953, 1201, 1364, 1486, 1601, 2096
HpyCH4IV	ACGT	1 cut(s)	2086
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 177, 291, 1788
HpyF3I	CTNAG	6 cut(s)	245, 843, 971, 1068, 1775, 1854
HpySE526I	ACGT	1 cut(s)	2086
Hsp92I	GRCGYC	1 cut(s)	1399
HspAI	GCGC	2 cut(s)	378, 1268
Ksp22I	TGATCA	2 cut(s)	1083, 1357
LguI	GCTCTTC	1 cut(s)	392
LmnI	GCTCC	5 cut(s)	328, 1012, 1194, 1391, 1858
Lsp1109I	GCAGC	6 cut(s)	167, 593, 856, 1454, 1597, 1775
MaeI	CTAG	3 cut(s)	489, 891, 1250
MaeII	ACGT	1 cut(s)	2086
MaeIII	GTNAC	4 cut(s)	358, 905, 1339, 2090
MfeI	CAATTG	5 cut(s)	318, 1244, 1653, 1836, 1908
MflI	RGATCY	5 cut(s)	726, 1064, 1432, 1750, 1867
MhlI	GDGCHC	4 cut(s)	152, 815, 1199, 1388
MlyI	GAGTC	4 cut(s)	428, 1017, 1721, 1982
MmeI	TCCRAC	1 cut(s)	1021
Mph1103I	ATGCAT	1 cut(s)	1668
MroXI	GAANNNNTTC	2 cut(s)	198, 1704
MseI	TTAA	9 cut(s)	162, 740, 941, 1019, 1047, 1163, 1619, 1718, 1946
MslI	CAYNNNNRTG	3 cut(s)	701, 1671, 2069
MspA1I	CMGCKG	2 cut(s)	285, 584
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	2 cut(s)	638, 839
MspR9I	CCNGG	1 cut(s)	1850
MunI	CAATTG	5 cut(s)	318, 1244, 1653, 1836, 1908
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	1850
MwoI	GCNNNNNNNGC	4 cut(s)	14, 177, 291, 1788
NheI	GCTAGC	1 cut(s)	488
NlaIV	GGNNCC	2 cut(s)	1014, 1892
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	2 cut(s)	905, 2090
NsiI	ATGCAT	1 cut(s)	1668
NspI	RCATGY	1 cut(s)	1666
PaeI	GCATGC	1 cut(s)	1666
PaeR7I	CTCGAG	1 cut(s)	1729
PagI	TCATGA	4 cut(s)	1504, 1644, 1672, 1882
PceI	AGGCCT	1 cut(s)	2061
PciSI	GCTCTTC	1 cut(s)	392
PctI	GAATGC	1 cut(s)	262
PdmI	GAANNNNTTC	2 cut(s)	198, 1704
PfeI	GAWTC	6 cut(s)	29, 219, 224, 296, 1501, 1741
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	8 cut(s)	7, 58, 182, 583, 871, 1444, 1612, 1790
PleI	GAGTC	4 cut(s)	427, 1017, 1721, 1982
PpsI	GAGTC	4 cut(s)	427, 1017, 1721, 1982
PshBI	ATTAAT	1 cut(s)	1619
Psp124BI	GAGCTC	1 cut(s)	1388
Psp6I	CCWGG	1 cut(s)	1848
PspFI	CCCAGC	4 cut(s)	285, 829, 1223, 2075
PspGI	CCWGG	1 cut(s)	1848
PspN4I	GGNNCC	2 cut(s)	1014, 1892
PspPI	GGNCC	1 cut(s)	344
PspXI	VCTCGAGB	1 cut(s)	1729
PstI	CTGCAG	3 cut(s)	1444, 1527, 1793
PstNI	CAGNNNCTG	1 cut(s)	1788
PsuI	RGATCY	5 cut(s)	726, 1064, 1432, 1750, 1867
PvuII	CAGCTG	2 cut(s)	285, 584
RsaI	GTAC	2 cut(s)	611, 955
RsaNI	GTAC	2 cut(s)	610, 954
RseI	CAYNNNNRTG	3 cut(s)	701, 1671, 2069
SacI	GAGCTC	1 cut(s)	1388
SapI	GCTCTTC	1 cut(s)	392
SaqAI	TTAA	9 cut(s)	162, 740, 941, 1019, 1047, 1163, 1619, 1718, 1946
SatI	GCNGC	8 cut(s)	6, 57, 181, 582, 870, 1443, 1611, 1789
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	4 cut(s)	428, 1017, 1721, 1982
ScrFI	CCNGG	1 cut(s)	1850
SduI	GDGCHC	4 cut(s)	152, 815, 1199, 1388
SfcI	CTRYAG	4 cut(s)	1440, 1523, 1789, 2048
Sfr274I	CTCGAG	1 cut(s)	1729
SlaI	CTCGAG	1 cut(s)	1729
SmiMI	CAYNNNNRTG	3 cut(s)	701, 1671, 2069
SmlI	CTYRAG	4 cut(s)	161, 184, 1496, 1729
SmoI	CTYRAG	4 cut(s)	161, 184, 1496, 1729
SphI	GCATGC	1 cut(s)	1666
SseBI	AGGCCT	1 cut(s)	2061
SsiI	CCGC	5 cut(s)	5, 23, 35, 57, 1919
SspMI	CTAG	3 cut(s)	489, 891, 1250
SstI	GAGCTC	1 cut(s)	1388
StuI	AGGCCT	1 cut(s)	2061
StyD4I	CCNGG	1 cut(s)	1848
StyI	CCWWGG	1 cut(s)	1059
TaaI	ACNGT	8 cut(s)	558, 570, 953, 1201, 1364, 1486, 1601, 2096
TaiI	ACGT	1 cut(s)	2089
TaqI	TCGA	6 cut(s)	116, 222, 437, 504, 576, 1730
TauI	GCSGC	2 cut(s)	8, 59
TfiI	GAWTC	6 cut(s)	29, 219, 224, 296, 1501, 1741
Tru1I	TTAA	9 cut(s)	162, 740, 941, 1019, 1047, 1163, 1619, 1718, 1946
Tru9I	TTAA	9 cut(s)	162, 740, 941, 1019, 1047, 1163, 1619, 1718, 1946
TscAI	CASTG	7 cut(s)	397, 890, 1204, 1324, 1367, 1489, 1606
TseFI	GTSAC	2 cut(s)	905, 2090
TseI	GCWGC	6 cut(s)	180, 581, 869, 1442, 1610, 1788
Tsp45I	GTSAC	2 cut(s)	905, 2090
TspDTI	ATGAA	8 cut(s)	73, 269, 685, 1233, 1493, 1633, 1661, 1871
TspRI	CASTG	7 cut(s)	397, 890, 1204, 1324, 1367, 1489, 1606
Van91I	CCANNNNNTGG	1 cut(s)	521
Vha464I	CTTAAG	1 cut(s)	161
VspI	ATTAAT	1 cut(s)	1619
XagI	CCTNNNNNAGG	1 cut(s)	1853
XapI	RAATTY	2 cut(s)	1334, 1538
XceI	RCATGY	1 cut(s)	1666
XhoI	CTCGAG	1 cut(s)	1729
XmiI	GTMKAC	1 cut(s)	1844
XmnI	GAANNNNTTC	2 cut(s)	198, 1704
XspI	CTAG	3 cut(s)	489, 891, 1250
Zsp2I	ATGCAT	1 cut(s)	1668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.