Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8285713.1

Orthogroup ID

OG0003655

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 775

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8285713.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 550 bp

atggcgcctccctcatctgcaagttcgggtgaagattcatcaaccccggacaccacccaaagccacctccagcatagtttccttctccacaaagcatctgataaattaatttcaagtggcaaagcccggaggaggaggaggagtattgatctgtcccccacaaagaccgacgacgacgacaagaagcaatccgatgatgaacgctggttgagaatggaagcttttcagttagtttggtcaagaattgaatccactatcaaccatgttctgcggaatatcaatgctcgggttttcgatcacatacgccgctgggtctgggattccttcaatgctatcaaaccgcttgccaccatttctcctggcccttttcctattgtcagccaagttacctgtacacagctcttcactgggctccttctcaccaataatatggagtttgttgatgatatttcgacatttcaagagctgggcctctgcttgaaatcccatggatgccatgtggctaacctttcctccttcgacttttcatccaagaatgggatcgctggct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000781 GO:0000784 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005656 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006267 GO:0006270 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0016043 GO:0022402 GO:0022607 GO:0022622 GO:0031261 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0032993 GO:0033260 GO:0034285 GO:0034622 GO:0034641 GO:0034645 GO:0036387 GO:0036388 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0065004 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090696 GO:0097159 GO:0098687 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1902299 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC3_N

Protein Analysis

183

Amino Acids

20.53

Weight (kDa)

7.05

Isoelectric Point (pI)

73.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16690 AT5G16690
fragaria_vesca	FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260
malus_domestica	MD01G1239300.v1.1 MD07G1032700.v1.1
prunus_persica	Prupe.2G329300_v2.0.a1
pyrus_communis	pycom07g02310
rosa_chinensis	RchiOBHm_Chr1g0384611 RchiOBHm_Chr6g0290011
rosa_laevigata	RLG00000000745 RLG00000026027
rosa_multiflora	Rmu_co8125142.1_g000001 Rmu_co8285713.1_g000001 Rmu_sc0012136.1_g000030
rosa_roxburghii	Rroxscaffold_4G00276520
rosa_rugosa	Rorug01G0450000 Rorug01G0450100
rosa_samantha	Rh1AG348300 Rh1AG474600 Rh1BG432700 Rh1CG445900 Rh1DG465300 Rh5DG247400
rosa_wichuraiana	Rw1G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	3 cut(s)	271, 307, 341
AclWI	GGATC	1 cut(s)	548
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	2 cut(s)	132, 537
AgsI	TTSAA	5 cut(s)	114, 248, 328, 461, 481
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	3 cut(s)	221, 400, 466
AluI	AGCT	3 cut(s)	221, 400, 466
AlwI	GGATC	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	2 cut(s)	361, 469
AseI	ATTAAT	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	362, 469
AsuC2I	CCSGG	2 cut(s)	47, 127
AsuHPI	GGTGA	2 cut(s)	41, 412
AvaI	CYCGRG	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	414
BciT130I	CCWGG	1 cut(s)	360
BcnI	CCSGG	2 cut(s)	47, 127
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	308
Bme1390I	CCNGG	3 cut(s)	47, 127, 360
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	362, 469
BmiI	GGNNCC	2 cut(s)	6, 413
BmrFI	CCNGG	3 cut(s)	47, 127, 360
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	104, 482
BmuI	ACTGGG	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	53
BpuMI	CCSGG	2 cut(s)	47, 127
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	45, 487
BsaXI	ACNNNNNCTCC	6 cut(s)	127, 157, 340, 370, 497, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 537
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	45, 487
BseGI	GGATG	2 cut(s)	497, 527
BseLI	CCNNNNNNNGG	2 cut(s)	132, 537
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	4 cut(s)	145, 148, 151, 154
BseYI	CCCAGC	2 cut(s)	309, 466
BshFI	GGCC	2 cut(s)	363, 471
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	47, 127
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	132, 537
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	363, 471
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp1407I	TGTACA	1 cut(s)	392
Bsp143I	GATC	3 cut(s)	148, 295, 540
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	3 cut(s)	271, 307, 341
BspANI	GGCC	2 cut(s)	363, 471
BspLI	GGNNCC	2 cut(s)	6, 413
BspPI	GGATC	1 cut(s)	548
BspQI	GCTCTTC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	4
BsrGI	TGTACA	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	45, 487
BssMI	GATC	3 cut(s)	148, 295, 540
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	345, 547
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	2 cut(s)	497, 527
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	151, 298, 543
BstMBI	GATC	3 cut(s)	148, 295, 540
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	3 cut(s)	45, 125, 358
BstXI	CCANNNNNNTGG	1 cut(s)	430
BsuRI	GGCC	2 cut(s)	363, 471
BtgI	CCRYGG	1 cut(s)	487
BtsCI	GGATG	2 cut(s)	497, 527
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	345, 547
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	362, 469
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	3 cut(s)	263, 488, 497
CviQI	GTAC	1 cut(s)	393
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	150, 297, 542
DpnII	GATC	3 cut(s)	148, 295, 540
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	3 cut(s)	266, 491, 500
FaiI	YATR	6 cut(s)	75, 264, 302, 431, 489, 498
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	3 cut(s)	262, 487, 496
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	2 cut(s)	504, 514
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	1 cut(s)	307
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	307
GsaI	CCCAGC	2 cut(s)	313, 470
GsuI	CTGGAG	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	363, 471
HapII	CCGG	2 cut(s)	47, 127
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	266, 491, 500
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	3 cut(s)	35, 248, 320
HpaII	CCGG	2 cut(s)	47, 127
HphI	GGTGA	2 cut(s)	41, 412
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	2 cut(s)	100, 193
Hpy188III	TCNNGA	2 cut(s)	240, 461
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	3 cut(s)	173, 176, 179
HpyAV	CCTTC	4 cut(s)	92, 334, 425, 526
HpyCH4V	TGCA	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	266, 491, 500
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	148, 295, 540
LguI	GCTCTTC	1 cut(s)	407
LmnI	GCTCC	1 cut(s)	417
LweI	GCATC	2 cut(s)	104, 482
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	3 cut(s)	150, 297, 542
MboI	GATC	3 cut(s)	148, 295, 540
MboII	GAAGA	2 cut(s)	44, 394
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	3 cut(s)	104, 108, 243
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	9 cut(s)	18, 22, 77, 123, 126, 129, 132, 482, 523
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	2 cut(s)	47, 127
MspR9I	CCNGG	3 cut(s)	47, 127, 360
MvaI	CCWGG	1 cut(s)	360
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	47, 127
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	3 cut(s)	148, 295, 540
NlaIII	CATG	3 cut(s)	266, 491, 500
NlaIV	GGNNCC	2 cut(s)	6, 413
PciSI	GCTCTTC	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	35, 248, 320
PkrI	GCNGC	1 cut(s)	308
PluTI	GGCGCC	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	358
PspFI	CCCAGC	2 cut(s)	309, 466
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	6, 413
PspPI	GGNCC	2 cut(s)	362, 469
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
SapI	GCTCTTC	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	3 cut(s)	148, 295, 540
Sau96I	GGNCC	2 cut(s)	362, 469
ScrFI	CCNGG	3 cut(s)	47, 127, 360
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	6 cut(s)	69, 223, 392, 402, 468, 510
SfaNI	GCATC	2 cut(s)	104, 482
SfoI	GGCGCC	1 cut(s)	6
Sse9I	AATT	3 cut(s)	104, 108, 243
SsiI	CCGC	3 cut(s)	271, 307, 341
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	3 cut(s)	45, 125, 358
StyI	CCWWGG	1 cut(s)	487
TaqI	TCGA	3 cut(s)	294, 452, 519
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	3 cut(s)	104, 108, 243
TatI	WGTACW	1 cut(s)	392
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	3 cut(s)	35, 248, 320
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	412
TspDTI	ATGAA	3 cut(s)	27, 213, 516
TspRI	CASTG	1 cut(s)	412
VspI	ATTAAT	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.