Rh1CG445900

Origin recognition complex subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
69711827 .. 69718329
6503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG445900.1

Sequence Viewer

Length: 1686 bp
ATGGCGCCTTCCTCATCTGCAAGTTCGGGTGAAGATTCATCAACCCCGGACACCACCACCCAAAGCCACCTCCAGCATAGTTTCCTTCTTCACAAAGCATCTGATAAATTAATTTCAAGTGGCAAAGCCCGGAGGAGGAGGATTGATCTGTCCCCCACAAAGACCGACGACGACGACGACAAGAAGCAATCCGATGATGAACGCTGGTTGAGAATGGAAGCTTTTCAGTTAGTTTGGTCAAGAATTGAATCCACTATCAACCATGTTCTGCGGAATATCAATGCTCGGGTTTTCGATCACATACGCAGCTGGGTCTGGGATTCCTTCAATGCTGCTATCAAACCACTTGCCACCATTTCTCCTGGCCCTTTTCCTATTGTCAGCCAAGTTACCTGTACACAGCTCTTCACTGGGCTCCTTCTCACCAATAATATGGAGTTTGTTGATGATATTTCGACATTTCAAGAGCTGGGCCTCTGCTTGAAATCCCATGGATGCCATGTGGCTAACCTTTCCTCCTTCGACTTTTCATCCAAGAATGGGATCGCTGGCTGTCTCACAAGTTTATTGAGACAGTTTCTCATGTCTACTTTTGATGCTGCTGATATGTCCATACTGGCATCATGGTACAGTCGGCAAGGAAACTATGGTTCCCCTGTGGTTGTCATTATAGATGATATGGAACGATGTTGTGGTGCTGTCTTGTCTGATTTCATTCTTATGTTGAGTGAATGGGTTGTAAAGATCCCAGTCATCTTAATAATGGGTGTTGCGACAACTCTGGATGCCCCTAGAAAAATACTTTCTTCAAATGTACTGCAGAAGTTGTGGCCTTGCAACTTCAAGTTGGGATCACCTGCTGAGAGGATGGATGCAGTTGTTGAGGCTGCTCTTGTGAGGCAGTGTTCTGGTTTTGCTGTTGGTCATAAGGTGGCTGTTTTTCTGCGGAACTACTTCTTAAATCAGGATGGTACATTGACATCTTTTGTTAGAGCATTGAAGATAGCATGTGTTCAACATTTTTCCACGGAGCCTTTAAGCTTCCTGCTTGGATGGTTGCTTGTTAAAGAAGACAGTAAGGGAGTTCAGAGTGAGAAAGCGGTCAAGCTTGCTTCTGAGCTTTTATCTCTTGCAAGGAATCAAATAGCTGAACAAACTGAAGTCACTATAGTTCATAGTTTGACAGAGTTGACGAAATTGCAGAAGCTCTGGAGCACCGTTGTTCTGTGCTTATATGAAGCTGGGAAGTGTAACAAAACTCGATTGATAGACTTATTTTGTGAGGCACTTGATCCAGATACTTACAACTTATTGGCTTCTGATGGTCTTACTGGAACTGGAAAAGGTTTTGTTCAATCTTTGTCAAGTGATCACTGTATGCTTGAGCAGAACTTGAGCTACAGAAAGGGACACCTTATTTGCCAATTATTAGGTAGAGTGAGGGATCTTCCTGCAGCATTGCTTTGTCGGCTGCTGAATAGTTGGAAAAATCTCACTGTGGATGTTCTTGAGATTCATGACAAGGTAAAGGAGCTACAGGCAATATTAAAATTAGACAAAGGAAGTTGTAAACCAGATTTGAAGGAGATATCCAGAAGACATACATCTCGGAGTCCCTTAAAGATTGGTGAATCACAATCAATAAATGAAAAAGCCGCTATACTAATGGATTGCATGGTTAGGTAA

Protein Analysis

561

Amino Acids

62.4

Weight (kDa)

7.51

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ORC3_N PF07034 44 - 349 5.8e-63 Origin recognition complex (ORC) subunit 3 N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 865
Acc36I ACCTGC 1 cut(s) 865
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 587
AciI CCGC 4 cut(s) 271, 946, 1100, 1656
AclWI GGATC 5 cut(s) 551, 739, 859, 1286, 1452
AcuI CTGAAG 1 cut(s) 1179
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 397, 629, 816, 973
AfiI CCNNNNNNNGG 2 cut(s) 135, 540
AjnI CCWGG 1 cut(s) 361
Alw21I GWGCWC 1 cut(s) 1217
Alw26I GTCTC 2 cut(s) 560, 565
AlwI GGATC 5 cut(s) 551, 739, 859, 1286, 1452
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 3 cut(s) 364, 472, 830
ApeKI GCWGC 6 cut(s) 306, 332, 599, 887, 1454, 1471
ArsI GACNNNNNNTTYG 2 cut(s) 1401, 1433
AseI ATTAAT 1 cut(s) 110
Asp700I GAANNNNTTC 2 cut(s) 222, 953
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 365, 472
AsuC2I CCSGG 2 cut(s) 47, 130
AsuHPI GGTGA 4 cut(s) 41, 415, 846, 1640
AvaI CYCGRG 1 cut(s) 285
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 417
BbsI GAAGAC 2 cut(s) 1077, 1603
Bbv12I GWGCWC 1 cut(s) 1217
BbvI GCAGC 6 cut(s) 318, 319, 586, 874, 1458, 1466
BccI CCATC 4 cut(s) 862, 962, 1047, 1316
BciT130I CCWGG 1 cut(s) 363
BclI TGATCA 1 cut(s) 1369
BcnI CCSGG 2 cut(s) 47, 130
BcoDI GTCTC 2 cut(s) 560, 565
BfaI CTAG 1 cut(s) 792
BfmI CTRYAG 5 cut(s) 818, 1167, 1399, 1452, 1535
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 865
BisI GCNGC 7 cut(s) 307, 333, 600, 888, 1455, 1472, 1656
BlsI GCNGC 7 cut(s) 308, 334, 601, 889, 1456, 1473, 1657
Bme1390I CCNGG 3 cut(s) 47, 130, 363
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 2 cut(s) 365, 472
BmiI GGNNCC 4 cut(s) 6, 416, 652, 1032
BmrFI CCNGG 3 cut(s) 47, 130, 363
BmrI ACTGGG 2 cut(s) 420, 743
BmsI GCATC 6 cut(s) 107, 485, 586, 629, 775, 862
BmuI ACTGGG 2 cut(s) 420, 743
BpiI GAAGAC 2 cut(s) 1077, 1603
BpmI CTGGAG 2 cut(s) 56, 1231
BpuEI CTTGAG 3 cut(s) 1403, 1414, 1529
BpuMI CCSGG 2 cut(s) 47, 130
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 45, 490, 1026
BsaXI ACNNNNNCTCC 4 cut(s) 343, 373, 500, 530
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 540
Bse1I ACTGG 5 cut(s) 415, 621, 749, 1336, 1342
Bse3DI GCAATG 1 cut(s) 1457
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 45, 490, 1026
BseGI GGATG 8 cut(s) 500, 530, 790, 873, 877, 973, 1058, 1507
BseLI CCNNNNNNNGG 2 cut(s) 135, 540
BseMI GCAATG 1 cut(s) 1457
BseMII CTCAG 2 cut(s) 852, 1107
BseNI ACTGG 5 cut(s) 415, 621, 749, 1336, 1342
BseRI GAGGAG 2 cut(s) 148, 151
BseXI GCAGC 6 cut(s) 318, 319, 586, 874, 1458, 1466
BseYI CCCAGC 3 cut(s) 309, 469, 1241
BshFI GGCC 3 cut(s) 366, 474, 832
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 1217
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 2 cut(s) 47, 130
BslFI GGGAC 3 cut(s) 136, 1422, 1599
BslI CCNNNNNNNGG 2 cut(s) 135, 540
BsmAI GTCTC 2 cut(s) 560, 565
BsmFI GGGAC 3 cut(s) 136, 1422, 1599
BsnI GGCC 3 cut(s) 366, 474, 832
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 2 cut(s) 417, 1217
Bsp1407I TGTACA 1 cut(s) 395
Bsp143I GATC 8 cut(s) 145, 295, 543, 744, 851, 1291, 1369, 1444
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 4 cut(s) 271, 946, 1100, 1656
BspANI GGCC 3 cut(s) 366, 474, 832
BspCNI CTCAG 2 cut(s) 853, 1108
BspHI TCATGA 1 cut(s) 1516
BspLI GGNNCC 4 cut(s) 6, 416, 652, 1032
BspMAI CTGCAG 2 cut(s) 822, 1456
BspMI ACCTGC 1 cut(s) 865
BspPI GGATC 5 cut(s) 551, 739, 859, 1286, 1452
BspQI GCTCTTC 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 1457
BsrGI TGTACA 1 cut(s) 395
BsrI ACTGG 5 cut(s) 415, 621, 749, 1336, 1342
BssECI CCNNGG 3 cut(s) 45, 490, 1026
BssMI GATC 8 cut(s) 145, 295, 543, 744, 851, 1291, 1369, 1444
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 490
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 6 cut(s) 576, 632, 1076, 1219, 1376, 1498
Bst6I CTCTTC 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 395
BstC8I GCNNGC 2 cut(s) 550, 1110
BstDEI CTNAG 2 cut(s) 861, 1116
BstDSI CCRYGG 2 cut(s) 490, 1026
BstF5I GGATG 8 cut(s) 500, 530, 790, 873, 877, 973, 1058, 1507
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 8 cut(s) 148, 298, 546, 747, 854, 1294, 1372, 1447
BstMAI GTCTC 2 cut(s) 560, 565
BstMBI GATC 8 cut(s) 145, 295, 543, 744, 851, 1291, 1369, 1444
BstMWI GCNNNNNNNGC 1 cut(s) 1468
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 1011
BstSCI CCNGG 3 cut(s) 45, 128, 361
BstSFI CTRYAG 5 cut(s) 818, 1167, 1399, 1452, 1535
BstV1I GCAGC 6 cut(s) 318, 319, 586, 874, 1458, 1466
BstV2I GAAGAC 2 cut(s) 1077, 1603
BstX2I RGATCY 2 cut(s) 744, 1444
BstXI CCANNNNNNTGG 1 cut(s) 433
BstYI RGATCY 2 cut(s) 744, 1444
BsuRI GGCC 3 cut(s) 366, 474, 832
BtgI CCRYGG 2 cut(s) 490, 1026
BtsCI GGATG 8 cut(s) 500, 530, 790, 873, 877, 973, 1058, 1507
BtsI GCAGTG 1 cut(s) 908
BtsIMutI CAGTG 4 cut(s) 408, 908, 1372, 1494
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 2 cut(s) 550, 1110
CciI TCATGA 1 cut(s) 1516
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 365, 472
Csp6I GTAC 4 cut(s) 396, 628, 815, 972
CviAII CATG 8 cut(s) 263, 491, 500, 583, 624, 1008, 1517, 1675
CviQI GTAC 4 cut(s) 396, 628, 815, 972
DdeI CTNAG 2 cut(s) 861, 1116
DinI GGCGCC 1 cut(s) 6
DpnI GATC 8 cut(s) 147, 297, 545, 746, 853, 1293, 1371, 1446
DpnII GATC 8 cut(s) 145, 295, 543, 744, 851, 1291, 1369, 1444
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 417
Eco32I GATATC 1 cut(s) 1590
Eco57I CTGAAG 1 cut(s) 1179
Eco88I CYCGRG 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 361
EcoRV GATATC 1 cut(s) 1590
EcoT14I CCWWGG 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 417
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 490
FaeI CATG 8 cut(s) 266, 494, 503, 586, 627, 1011, 1520, 1678
FaqI GGGAC 3 cut(s) 136, 1422, 1599
FatI CATG 8 cut(s) 262, 490, 499, 582, 623, 1007, 1516, 1674
FbaI TGATCA 1 cut(s) 1369
FblI GTMKAC 1 cut(s) 587
Fnu4HI GCNGC 7 cut(s) 307, 333, 600, 888, 1455, 1472, 1656
FokI GGATG 8 cut(s) 507, 517, 797, 880, 884, 980, 1065, 1514
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 7 cut(s) 307, 333, 600, 888, 1455, 1472, 1656
FspBI CTAG 1 cut(s) 792
GlaI GCGC 1 cut(s) 6
GluI GCNGC 7 cut(s) 307, 333, 600, 888, 1455, 1472, 1656
GsaI CCCAGC 3 cut(s) 313, 473, 1245
GsuI CTGGAG 2 cut(s) 56, 1231
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 366, 474, 832
HapII CCGG 2 cut(s) 47, 130
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 8 cut(s) 266, 494, 503, 586, 627, 1011, 1520, 1678
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 1191
HindII GTYRAC 1 cut(s) 1191
HindIII AAGCTT 3 cut(s) 219, 1039, 1106
HinfI GANTC 7 cut(s) 35, 248, 320, 1138, 1513, 1612, 1631
HpaII CCGG 2 cut(s) 47, 130
HphI GGTGA 4 cut(s) 41, 415, 846, 1640
Hpy166II GTNNAC 4 cut(s) 398, 588, 1191, 1571
Hpy188I TCNGA 7 cut(s) 103, 193, 709, 1089, 1117, 1321, 1611
Hpy188III TCNNGA 9 cut(s) 240, 464, 782, 965, 1210, 1295, 1508, 1517, 1593
Hpy8I GTNNAC 4 cut(s) 398, 588, 1191, 1571
Hpy99I CGWCG 4 cut(s) 170, 173, 176, 179
HpyAV CCTTC 6 cut(s) 18, 95, 334, 428, 529, 1576
HpyCH4III ACNGT 6 cut(s) 576, 632, 1076, 1219, 1376, 1498
HpyCH4V TGCA 8 cut(s) 20, 820, 837, 875, 1133, 1201, 1454, 1674
HpyF10VI GCNNNNNNNGC 1 cut(s) 1468
HpyF3I CTNAG 2 cut(s) 861, 1116
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 8 cut(s) 266, 494, 503, 586, 627, 1011, 1520, 1678
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 1369
Kzo9I GATC 8 cut(s) 145, 295, 543, 744, 851, 1291, 1369, 1444
LguI GCTCTTC 1 cut(s) 410
LmnI GCTCC 4 cut(s) 420, 1030, 1212, 1531
Lsp1109I GCAGC 6 cut(s) 318, 319, 586, 874, 1458, 1466
LweI GCATC 6 cut(s) 107, 485, 586, 629, 775, 862
MaeI CTAG 1 cut(s) 792
MaeIII GTNAC 3 cut(s) 388, 1162, 1250
MalI GATC 8 cut(s) 147, 297, 545, 746, 853, 1293, 1371, 1446
MboI GATC 8 cut(s) 145, 295, 543, 744, 851, 1291, 1369, 1444
MboII GAAGA 8 cut(s) 44, 80, 397, 798, 1012, 1082, 1439, 1608
MflI RGATCY 2 cut(s) 744, 1444
MhlI GDGCHC 2 cut(s) 417, 1217
MluCI AATT 6 cut(s) 107, 111, 243, 1196, 1424, 1550
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 1621
MmeI TCCRAC 1 cut(s) 1463
MroXI GAANNNNTTC 2 cut(s) 222, 953
MseI TTAA 7 cut(s) 110, 758, 959, 1037, 1065, 1547, 1619
MslI CAYNNNNRTG 1 cut(s) 719
MspA1I CMGCKG 1 cut(s) 309
MspI CCGG 2 cut(s) 47, 130
MspR9I CCNGG 3 cut(s) 47, 130, 363
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 1468
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 47, 130
NcoI CCATGG 1 cut(s) 490
NdeII GATC 8 cut(s) 145, 295, 543, 744, 851, 1291, 1369, 1444
NlaIII CATG 8 cut(s) 266, 494, 503, 586, 627, 1011, 1520, 1678
NlaIV GGNNCC 4 cut(s) 6, 416, 652, 1032
NmuCI GTSAC 1 cut(s) 1162
NspI RCATGY 1 cut(s) 1011
PagI TCATGA 1 cut(s) 1516
PaqCI CACCTGC 1 cut(s) 865
PciSI GCTCTTC 1 cut(s) 410
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdmI GAANNNNTTC 2 cut(s) 222, 953
PfeI GAWTC 6 cut(s) 35, 248, 320, 1138, 1513, 1631
PkrI GCNGC 7 cut(s) 308, 334, 601, 889, 1456, 1473, 1657
PleI GAGTC 1 cut(s) 1620
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 1620
PshBI ATTAAT 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 361
PspFI CCCAGC 3 cut(s) 309, 469, 1241
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 4 cut(s) 6, 416, 652, 1032
PspPI GGNCC 2 cut(s) 365, 472
PsrI GAACNNNNNNTAC 2 cut(s) 1382, 1414
PstI CTGCAG 2 cut(s) 822, 1456
PsuI RGATCY 2 cut(s) 744, 1444
PvuII CAGCTG 1 cut(s) 309
RsaI GTAC 4 cut(s) 397, 629, 816, 973
RsaNI GTAC 4 cut(s) 396, 628, 815, 972
RseI CAYNNNNRTG 1 cut(s) 719
SapI GCTCTTC 1 cut(s) 410
SaqAI TTAA 7 cut(s) 110, 758, 959, 1037, 1065, 1547, 1619
SatI GCNGC 7 cut(s) 307, 333, 600, 888, 1455, 1472, 1656
Sau3AI GATC 8 cut(s) 145, 295, 543, 744, 851, 1291, 1369, 1444
Sau96I GGNCC 2 cut(s) 365, 472
SchI GAGTC 1 cut(s) 1621
ScrFI CCNGG 3 cut(s) 47, 130, 363
SduI GDGCHC 2 cut(s) 417, 1217
SfaNI GCATC 6 cut(s) 107, 485, 586, 629, 775, 862
SfcI CTRYAG 5 cut(s) 818, 1167, 1399, 1452, 1535
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 719
SmlI CTYRAG 3 cut(s) 1382, 1393, 1508
SmoI CTYRAG 3 cut(s) 1382, 1393, 1508
Sse9I AATT 6 cut(s) 107, 111, 243, 1196, 1424, 1550
SsiI CCGC 4 cut(s) 271, 946, 1100, 1656
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 1545
SspMI CTAG 1 cut(s) 792
StyD4I CCNGG 3 cut(s) 45, 128, 361
StyI CCWWGG 1 cut(s) 490
TaaI ACNGT 6 cut(s) 576, 632, 1076, 1219, 1376, 1498
TaqI TCGA 4 cut(s) 294, 455, 522, 1261
TaqII GACCGA 1 cut(s) 179
TasI AATT 6 cut(s) 107, 111, 243, 1196, 1424, 1550
TatI WGTACW 2 cut(s) 395, 814
TauI GCSGC 1 cut(s) 1658
TfiI GAWTC 6 cut(s) 35, 248, 320, 1138, 1513, 1631
Tru1I TTAA 7 cut(s) 110, 758, 959, 1037, 1065, 1547, 1619
Tru9I TTAA 7 cut(s) 110, 758, 959, 1037, 1065, 1547, 1619
TscAI CASTG 4 cut(s) 415, 908, 1379, 1501
TseFI GTSAC 1 cut(s) 1162
TseI GCWGC 6 cut(s) 306, 332, 599, 887, 1454, 1471
Tsp45I GTSAC 1 cut(s) 1162
TspDTI ATGAA 8 cut(s) 27, 213, 519, 703, 1163, 1251, 1505, 1662
TspGWI ACGGA 1 cut(s) 1043
TspRI CASTG 4 cut(s) 415, 908, 1379, 1501
VspI ATTAAT 1 cut(s) 110
XceI RCATGY 1 cut(s) 1011
XmiI GTMKAC 1 cut(s) 587
XmnI GAANNNNTTC 2 cut(s) 222, 953
XspI CTAG 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.