Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003655

Physical Location & Seq

Genomic Coordinates Forward (+)

32554882 .. 32562521

Gene Structure 7640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1239300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGCCGCCCAAAACAACATCCAGCATTTCTTTGTTCTTCACAGAAAAATCAACTTCTGGTGGGAAAGCCCGAAAGAGGCTCGACCTATGCCCAACAAAGCTTAAGGAAGGCGACGAGGGCTGCTTGCGAATGGAAGCATTTCAGTTAGTTTGGTCAGGAATCGAATCCTCCATCAAGGACGTTCTGAGGAATATGAATGCTCAGGTTTTCAACCCGATACACAGCTGGGTATGCGATTCCTTCGGTGCTATGAAGCCAATTGCTCCCATCCCTTCTCCTCTCGGCACTTTTCCGATTGTCACGCACGCTACTTCTTGTGCACAGCTCTTCACTGCGCTCCTTCTCACCGGGAATATGGAGTTTGTTGACGTTTTTTCGACATTTCAAGAGCTTGGCCTCAGCCTGAAATCTCACGGATGCCATGTCGCTAACCTTTCCTCTCTCGACTTTTCACCGAAGAATGGGATTGCTGGTTGTCTTTCAAGTTTATTGAGACAGTTTTTGATGCGCTCTTTTGATGCAGGTGATATGTCCCTATTGGCATCATGGTACAGCCAGCACGGAAACTATGGTTCTCCGGTGGTTAGGATGGATGCAGTTGTTGAGGCTGCTCTTGTGAGGTGCTGCTCTGGTTTCGCTATGGGTCACAAGGTGGCTATGTTTCTGCGAAACTACTTCTTCAATCAGGATGGTACACTGGCATCTTTTATTAGGGCTTTGAAGATAGCATCTGTCCAACATTTCTCCTCGGAGCCTTTAAGCTTCATACTTGGTCGATTGCTTGTTAAAGAAGGCAGCAAGGCTTATGGGCATTCGGATCAATTGGCTGAACAAACTGATATCAATATAGCTCATGGTTTGACAGAGTCGAAGAGATTGCAGATGCTCTGGAGCACTGTAGTTCTGGTTTTGGCACCTCAAGCTGAATTTTTGTATCTAATGTCTGATGAGCGAAGGAACACTTGCTTATATGAAGCTGGGAAGTTCGACAAAATTCAATTGTTAGACTTATTTTGCGAGGTGCTTGATCCAGATATTTACAACTCATTGGCTTCTGATAATGATAATCTCACTGGAGTGGGAAAAAGTTTTGCTACATCTTTGTCAAGTGATCACCGTGTGCTTGAACAAAATTTGAGCTCCCGAAAGGGACACCTAATTTGTCAGGTAGTTCACAAAGTGAGGGATCTTCCTGCAGTATTGCTCTGTCAGTTGCTCAAAAGTTGGGAAGTTTTCACCGTCAATGTTTTTGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000781 GO:0000784 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005656 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006267 GO:0006270 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0016043 GO:0022402 GO:0022607 GO:0022622 GO:0031261 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0032993 GO:0033260 GO:0034285 GO:0034622 GO:0034641 GO:0034645 GO:0036387 GO:0036388 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0065004 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090696 GO:0097159 GO:0098687 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1902299 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC3_N

Protein Analysis

420

Amino Acids

46.32

Weight (kDa)

6.63

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC3_N	PF07034	38 - 192	8.1e-12	Origin recognition complex (ORC) subunit 3 N-terminus
ORC3_N	PF07034	192 - 255	8.7e-11	Origin recognition complex (ORC) subunit 3 N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16690 AT5G16690
fragaria_vesca	FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260
malus_domestica	MD01G1239300.v1.1 MD07G1032700.v1.1
prunus_persica	Prupe.2G329300_v2.0.a1
pyrus_communis	pycom07g02310
rosa_chinensis	RchiOBHm_Chr1g0384611 RchiOBHm_Chr6g0290011
rosa_laevigata	RLG00000000745 RLG00000026027
rosa_multiflora	Rmu_co8125142.1_g000001 Rmu_co8285713.1_g000001 Rmu_sc0012136.1_g000030
rosa_roxburghii	Rroxscaffold_4G00276520
rosa_rugosa	Rorug01G0450000 Rorug01G0450100
rosa_samantha	Rh1AG348300 Rh1AG474600 Rh1BG432700 Rh1CG445900 Rh1DG465300 Rh5DG247400
rosa_wichuraiana	Rw1G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	913
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	3 cut(s)	825, 1022, 1194
AcsI	RAATTY	3 cut(s)	926, 993, 1132
AdeI	CACNNNGTG	3 cut(s)	652, 1120, 1180
AfaI	GTAC	2 cut(s)	551, 694
AfiI	CCNNNNNNNGG	2 cut(s)	75, 461
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	7 cut(s)	211, 386, 483, 682, 721, 998, 1127
AleI	CACNNNNGTG	1 cut(s)	1076
AluBI	AGCT	9 cut(s)	100, 225, 325, 391, 762, 851, 923, 977, 1140
AluI	AGCT	9 cut(s)	100, 225, 325, 391, 762, 851, 923, 977, 1140
Alw21I	GWGCWC	3 cut(s)	322, 896, 1142
Alw26I	GTCTC	1 cut(s)	487
Alw44I	GTGCAC	1 cut(s)	318
AlwI	GGATC	3 cut(s)	825, 1022, 1194
AoxI	GGCC	1 cut(s)	394
ApaLI	GTGCAC	1 cut(s)	318
ApeKI	GCWGC	4 cut(s)	120, 608, 624, 795
ApoI	RAATTY	3 cut(s)	926, 993, 1132
ArsI	GACNNNNNNTTYG	2 cut(s)	1143, 1175
Asp700I	GAANNNNTTC	1 cut(s)	138
AspLEI	GCGC	2 cut(s)	337, 510
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	5 cut(s)	337, 444, 536, 1106, 1228
BaeGI	GKGCMC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	913
BanII	GRGCYC	1 cut(s)	1142
Bbv12I	GWGCWC	3 cut(s)	322, 896, 1142
BbvCI	CCTCAGC	1 cut(s)	398
BbvI	GCAGC	4 cut(s)	107, 595, 611, 807
BccI	CCATC	4 cut(s)	179, 275, 583, 683
BcgI	CGANNNNNNTGC	2 cut(s)	859, 893
BclI	TGATCA	1 cut(s)	1111
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	487
BfmI	CTRYAG	2 cut(s)	897, 1194
BfrI	CTTAAG	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	512
BisI	GCNGC	5 cut(s)	5, 121, 609, 625, 796
BlsI	GCNGC	5 cut(s)	6, 122, 610, 626, 797
Bme1390I	CCNGG	1 cut(s)	349
BmiI	GGNNCC	2 cut(s)	753, 915
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	8 cut(s)	407, 495, 508, 551, 583, 710, 737, 873
BpmI	CTGGAG	2 cut(s)	910, 1095
Bpu10I	CCTNAGC	2 cut(s)	201, 398
BpuEI	CTTGAG	1 cut(s)	903
BpuMI	CCSGG	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	747
BsaWI	WCCGGW	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 461
Bse1I	ACTGG	2 cut(s)	702, 1078
BseDI	CCNNGG	1 cut(s)	747
BseGI	GGATG	6 cut(s)	17, 267, 422, 594, 598, 694
BseLI	CCNNNNNNNGG	2 cut(s)	75, 461
BseMII	CTCAG	3 cut(s)	176, 215, 412
BseNI	ACTGG	2 cut(s)	702, 1078
BseRI	GAGGAG	2 cut(s)	267, 736
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	4 cut(s)	107, 595, 611, 807
BseYI	CCCAGC	2 cut(s)	225, 977
BshFI	GGCC	1 cut(s)	396
BshNI	GGYRCC	1 cut(s)	913
BsiHKAI	GWGCWC	3 cut(s)	322, 896, 1142
BsiSI	CCGG	2 cut(s)	348, 578
BslFI	GGGAC	2 cut(s)	517, 1164
BslI	CCNNNNNNNGG	2 cut(s)	75, 461
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	2 cut(s)	517, 1164
BsmI	GAATGC	2 cut(s)	202, 811
BsnI	GGCC	1 cut(s)	396
Bsp1286I	GDGCHC	3 cut(s)	322, 896, 1142
Bsp143I	GATC	4 cut(s)	817, 1027, 1111, 1186
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	3 cut(s)	177, 214, 411
BspLI	GGNNCC	2 cut(s)	753, 915
BspMAI	CTGCAG	1 cut(s)	1198
BspMI	ACCTGC	1 cut(s)	512
BspPI	GGATC	3 cut(s)	825, 1022, 1194
BspQI	GCTCTTC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	913
BspTI	CTTAAG	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	702, 1078
BssECI	CCNNGG	1 cut(s)	747
BssMI	GATC	4 cut(s)	817, 1027, 1111, 1186
Bst4CI	ACNGT	4 cut(s)	498, 898, 1118, 1240
Bst6I	CTCTTC	2 cut(s)	332, 866
BstAFI	CTTAAG	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	125, 306, 557
BstDEI	CTNAG	3 cut(s)	185, 201, 398
BstF5I	GGATG	6 cut(s)	17, 267, 422, 594, 598, 694
BstHHI	GCGC	2 cut(s)	337, 510
BstKTI	GATC	4 cut(s)	820, 1030, 1114, 1189
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	4 cut(s)	817, 1027, 1111, 1186
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 231, 920
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	2 cut(s)	897, 1194
BstSLI	GKGCMC	1 cut(s)	322
BstV1I	GCAGC	4 cut(s)	107, 595, 611, 807
BstX2I	RGATCY	1 cut(s)	1186
BstYI	RGATCY	1 cut(s)	1186
BsuRI	GGCC	1 cut(s)	396
BtsCI	GGATG	6 cut(s)	17, 267, 422, 594, 598, 694
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	4 cut(s)	330, 695, 894, 1071
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	3 cut(s)	125, 306, 557
CfoI	GCGC	2 cut(s)	337, 510
Csp6I	GTAC	2 cut(s)	550, 693
CviAII	CATG	3 cut(s)	422, 546, 854
CviQI	GTAC	2 cut(s)	550, 693
DdeI	CTNAG	3 cut(s)	185, 201, 398
DpnI	GATC	4 cut(s)	819, 1029, 1113, 1188
DpnII	GATC	4 cut(s)	817, 1027, 1111, 1186
DraIII	CACNNNGTG	3 cut(s)	652, 1120, 1180
Eam1104I	CTCTTC	2 cut(s)	332, 866
EarI	CTCTTC	2 cut(s)	332, 866
Ecl136II	GAGCTC	1 cut(s)	1140
Eco24I	GRGCYC	1 cut(s)	1142
Eco32I	GATATC	1 cut(s)	841
Eco53kI	GAGCTC	1 cut(s)	1140
EcoICRI	GAGCTC	1 cut(s)	1140
EcoRV	GATATC	1 cut(s)	841
EcoT38I	GRGCYC	1 cut(s)	1142
FaeI	CATG	3 cut(s)	425, 549, 857
FalI	AAGNNNNNCTT	2 cut(s)	946, 978
FaqI	GGGAC	2 cut(s)	517, 1164
FatI	CATG	3 cut(s)	421, 545, 853
FbaI	TGATCA	1 cut(s)	1111
Fnu4HI	GCNGC	5 cut(s)	5, 121, 609, 625, 796
FokI	GGATG	6 cut(s)	4, 254, 429, 601, 605, 701
FriOI	GRGCYC	1 cut(s)	1142
Fsp4HI	GCNGC	5 cut(s)	5, 121, 609, 625, 796
GlaI	GCGC	2 cut(s)	336, 509
GluI	GCNGC	5 cut(s)	5, 121, 609, 625, 796
GsaI	CCCAGC	2 cut(s)	229, 981
GsuI	CTGGAG	2 cut(s)	910, 1095
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	2 cut(s)	348, 578
HhaI	GCGC	2 cut(s)	337, 510
Hin1II	CATG	3 cut(s)	425, 549, 857
Hin6I	GCGC	2 cut(s)	335, 508
HinP1I	GCGC	2 cut(s)	335, 508
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	2 cut(s)	98, 760
HinfI	GANTC	4 cut(s)	159, 164, 236, 866
HpaII	CCGG	2 cut(s)	348, 578
HphI	GGTGA	5 cut(s)	337, 444, 536, 1106, 1228
Hpy166II	GTNNAC	4 cut(s)	320, 367, 695, 1174
Hpy188I	TCNGA	6 cut(s)	186, 294, 751, 817, 946, 1057
Hpy188III	TCNNGA	7 cut(s)	156, 386, 443, 686, 889, 1031, 1143
Hpy8I	GTNNAC	4 cut(s)	320, 367, 695, 1174
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	6 cut(s)	101, 250, 282, 350, 785, 948
HpyCH4III	ACNGT	4 cut(s)	498, 898, 1118, 1240
HpyCH4IV	ACGT	2 cut(s)	180, 369
HpyCH4V	TGCA	5 cut(s)	320, 521, 596, 880, 1196
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 231, 920
HpyF3I	CTNAG	3 cut(s)	185, 201, 398
HpySE526I	ACGT	2 cut(s)	180, 369
Hsp92II	CATG	3 cut(s)	425, 549, 857
HspAI	GCGC	2 cut(s)	335, 508
Ksp22I	TGATCA	1 cut(s)	1111
Kzo9I	GATC	4 cut(s)	817, 1027, 1111, 1186
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	5 cut(s)	268, 342, 751, 891, 1145
Lsp1109I	GCAGC	4 cut(s)	107, 595, 611, 807
LweI	GCATC	8 cut(s)	407, 495, 508, 551, 583, 710, 737, 873
MaeII	ACGT	2 cut(s)	180, 369
MaeIII	GTNAC	2 cut(s)	298, 644
MalI	GATC	4 cut(s)	819, 1029, 1113, 1188
MboI	GATC	4 cut(s)	817, 1027, 1111, 1186
MboII	GAAGA	7 cut(s)	28, 319, 469, 670, 733, 883, 1181
MfeI	CAATTG	3 cut(s)	258, 821, 998
MflI	RGATCY	1 cut(s)	1186
MhlI	GDGCHC	3 cut(s)	322, 896, 1142
MluCI	AATT	7 cut(s)	258, 821, 926, 993, 998, 1132, 1158
MlyI	GAGTC	1 cut(s)	875
MmeI	TCCRAC	1 cut(s)	760
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	3 cut(s)	102, 758, 786
MslI	CAYNNNNRTG	1 cut(s)	1076
MspA1I	CMGCKG	1 cut(s)	225
MspCI	CTTAAG	1 cut(s)	101
MspI	CCGG	2 cut(s)	348, 578
MspR9I	CCNGG	1 cut(s)	349
MunI	CAATTG	3 cut(s)	258, 821, 998
Mva1269I	GAATGC	2 cut(s)	202, 811
MwoI	GCNNNNNNNGC	3 cut(s)	117, 231, 920
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	4 cut(s)	817, 1027, 1111, 1186
NlaIII	CATG	3 cut(s)	425, 549, 857
NlaIV	GGNNCC	2 cut(s)	753, 915
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	2 cut(s)	298, 644
OliI	CACNNNNGTG	1 cut(s)	1076
PaqCI	CACCTGC	1 cut(s)	512
PciSI	GCTCTTC	1 cut(s)	332
PctI	GAATGC	2 cut(s)	202, 811
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	3 cut(s)	159, 164, 236
PflFI	GACNNNGTC	1 cut(s)	865
PkrI	GCNGC	5 cut(s)	6, 122, 610, 626, 797
PleI	GAGTC	1 cut(s)	874
PpsI	GAGTC	1 cut(s)	874
Psp124BI	GAGCTC	1 cut(s)	1142
PspFI	CCCAGC	2 cut(s)	225, 977
PspN4I	GGNNCC	2 cut(s)	753, 915
PstI	CTGCAG	1 cut(s)	1198
PsuI	RGATCY	1 cut(s)	1186
PsyI	GACNNNGTC	1 cut(s)	865
PvuII	CAGCTG	1 cut(s)	225
RsaI	GTAC	2 cut(s)	551, 694
RsaNI	GTAC	2 cut(s)	550, 693
RseI	CAYNNNNRTG	1 cut(s)	1076
SacI	GAGCTC	1 cut(s)	1142
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	102, 758, 786
SatI	GCNGC	5 cut(s)	5, 121, 609, 625, 796
Sau3AI	GATC	4 cut(s)	817, 1027, 1111, 1186
SchI	GAGTC	1 cut(s)	875
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	3 cut(s)	322, 896, 1142
SfaNI	GCATC	8 cut(s)	407, 495, 508, 551, 583, 710, 737, 873
SfcI	CTRYAG	2 cut(s)	897, 1194
SmiMI	CAYNNNNRTG	1 cut(s)	1076
SmlI	CTYRAG	2 cut(s)	101, 918
SmoI	CTYRAG	2 cut(s)	101, 918
Sse9I	AATT	7 cut(s)	258, 821, 926, 993, 998, 1132, 1158
SsiI	CCGC	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	1142
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	4 cut(s)	498, 898, 1118, 1240
TaiI	ACGT	2 cut(s)	183, 372
TaqI	TCGA	7 cut(s)	81, 162, 377, 444, 775, 869, 987
TasI	AATT	7 cut(s)	258, 821, 926, 993, 998, 1132, 1158
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	159, 164, 236
Tru1I	TTAA	3 cut(s)	102, 758, 786
Tru9I	TTAA	3 cut(s)	102, 758, 786
TscAI	CASTG	4 cut(s)	337, 702, 901, 1078
TseFI	GTSAC	2 cut(s)	298, 644
TseI	GCWGC	4 cut(s)	120, 608, 624, 795
Tsp45I	GTSAC	2 cut(s)	298, 644
TspDTI	ATGAA	4 cut(s)	209, 266, 754, 987
TspGWI	ACGGA	2 cut(s)	429, 576
TspRI	CASTG	4 cut(s)	337, 702, 901, 1078
Tth111I	GACNNNGTC	1 cut(s)	865
Vha464I	CTTAAG	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	318
XapI	RAATTY	3 cut(s)	926, 993, 1132
XmnI	GAANNNNTTC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.