Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003237

Physical Location & Seq

Genomic Coordinates Reverse (-)

5659554 .. 5662997

Gene Structure 3444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTCTTCTTCTGTAGCAGTGTTATGGGTTGCTACTTCTTCTCTAAATCCAGACCCAATGAACAATTGTGGGTTGGTAAGGGTTCTAGAATCTTCTAGACTGTTCTCTCCTTGTCAGAATCAGAGACTAAACAAAGGTAAGAAGAAGCAGATACCAACTTGGAGTTCTTCTTTTGTAAGGAACCGAAGTAGAAGAATTGGTGTTGTGTCTTCAAGCTTAGTAGCAAGTCCTTCTGGAGAGATAGCTCTTTCATCTGAAGAGAAGGTTTACAATGTTGTGTTGAAACAAGCTGCTTTGGTGAACAAACAGCTAAGGTCTTCTTCTTATGACCTTGATGTGAAGAAACCACAAGATGTTGTTCTTCCTGGGAGTTTGAGTTTGTTGGGTGAAGCTTATGATCGATGCGGTGAAGTTTGCGCTGAATATGCTAAGACGTTTTATCTTGGAACTTTGCTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCAATCTACGTTTGGTGTAGAAGAACTGATGAACTTGTGGATGGGCCAAATGCTTCACATATAACTCCCATGGCTTTAGATAGATGGGAAGCAAGGTTAGAAGATCTTTTCCGTGGTCGTCCTTTCGATATGCTTGATGCTGCTCTCGCTGATACAGTTGCTAGATACCCGGTCGATATTCAGCCATTTCGAGACATGATCGAAGGAATGAGAATGGACTTGAAGAAATCGAGATACCAGAACTTCGATGATCTATACCTTTACTGCTACTACGTCGCTGGAACCGTCGGATTGATGAGCGTTCCGGTTATGGGAATCGATCCTAAGTCGAAAGCAACAACCGAAAGTGTTTACAACGCTGCCTTGGCCCTTGGTATAGCCAATCAGCTTACTAACATACTCAGAGACGTAGGCGAAGATGCGAGAAGAGGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAGGCTGGTCTTTCAGATGAAGACATATTCGCCGGAAAAGTAACTGATAAATGGAGAAACTTCATGAAAATGCAGCTTAAACGAGCAAGAATGTTCTTCGACGAAGCTGAGAAAGGCGTCACCGAGCTCAGTGCCGCTAGCAGATGGCCTGTATGGGCTTCATTGCTATTGTACAGGAGAATACTGGACGAGATTGAAGCGAATGATTACAACAATTTTACTAAGAGAGCTTATGTGGGGAAAGTCAAGAAAATTGCAGCTTTGCCATTGGCTTATGCTAAATCAGTACTAAAGACTTCAAGTTCAAGACTATCGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016740 GO:0016765 GO:0016767 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01062 ko01100 ko01110 map00906 map01062 map01100 map01110

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

422

Amino Acids

47.49

Weight (kDa)

9.22

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQS_PSY	PF00494	141 - 397	1.9e-80	Squalene/phytoene synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17230 AT5G17230 AT5G17230 AT5G17230
fragaria_vesca	FvH4_1g27480 FvH4_6g38780
malus_domestica	MD09G1146800.v1.1 MD09G1281300.v1.1 MD17G1133400.v1.1
prunus_persica	Prupe.3G013200_v2.0.a1 Prupe.3G013200_v2.0.a1 Prupe.3G178500_v2.0.a1
pyrus_communis	pycom09g06720 pycom09g18890 pycom17g12790
rosa_chinensis	RchiOBHm_Chr2g0152351 RchiOBHm_Chr3g0488531
rosa_laevigata	RLG00000020629 RLG00000022946
rosa_multiflora	Rmu_sc0005885.1_g000002 Rmu_sc0019526.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095770 Rroxscaffold_6G00394200
rosa_rugosa	Rorug02G0432500 Rorug03G0238700 Rorug03G0238800 Rorug03G0238900 Rorug03G0239000
rosa_samantha	Rh2AG494000 Rh2BG506300 Rh2CG480300 Rh2DG517400 Rh3AG287700 Rh3CG321800 Rh3DG320600
rosa_wichuraiana	Rw2G040650 Rw3G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	405, 1083
AclWI	GGATC	1 cut(s)	800
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	1065
AfaI	GTAC	2 cut(s)	1121, 1236
AfiI	CCNNNNNNNGG	1 cut(s)	797
AgsI	TTSAA	6 cut(s)	213, 283, 709, 1145, 1248, 1254
AjnI	CCWGG	1 cut(s)	364
AjuI	GAANNNNNNNTTGG	4 cut(s)	148, 180, 466, 498
Alw21I	GWGCWC	1 cut(s)	1077
Alw26I	GTCTC	3 cut(s)	118, 672, 885
AlwI	GGATC	1 cut(s)	800
AoxI	GGCC	3 cut(s)	530, 852, 1094
ApeKI	GCWGC	5 cut(s)	290, 626, 845, 1021, 1205
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	530, 853
AsuC2I	CCSGG	1 cut(s)	656
AsuHPI	GGTGA	4 cut(s)	310, 398, 419, 1060
AsuNHI	GCTAGC	1 cut(s)	1085
AxyI	CCTNAGG	1 cut(s)	933
BanII	GRGCYC	1 cut(s)	1077
BbsI	GAAGAC	3 cut(s)	201, 309, 975
Bbv12I	GWGCWC	1 cut(s)	1077
BbvI	GCAGC	5 cut(s)	277, 613, 832, 1033, 1217
BccI	CCATC	3 cut(s)	521, 564, 1086
BcgI	CGANNNNNNTGC	2 cut(s)	1061, 1095
BciT130I	CCWGG	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	656
BcoDI	GTCTC	3 cut(s)	118, 672, 885
BfaI	CTAG	4 cut(s)	86, 96, 648, 1086
BfmI	CTRYAG	1 cut(s)	12
BglII	AGATCT	1 cut(s)	589
BisI	GCNGC	6 cut(s)	291, 627, 846, 1022, 1083, 1206
BlsI	GCNGC	6 cut(s)	292, 628, 847, 1023, 1084, 1207
BmcAI	AGTACT	1 cut(s)	1236
Bme1390I	CCNGG	2 cut(s)	366, 656
BmgT120I	GGNCC	2 cut(s)	530, 853
BmiI	GGNNCC	2 cut(s)	182, 769
BmrFI	CCNGG	2 cut(s)	366, 656
BmsI	GCATC	3 cut(s)	392, 613, 895
BmtI	GCTAGC	1 cut(s)	1089
BpiI	GAAGAC	3 cut(s)	201, 309, 975
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	2 cut(s)	311, 948
BpuMI	CCSGG	1 cut(s)	656
Bsa29I	ATCGAT	3 cut(s)	400, 804, 1262
BsaHI	GRCGYC	1 cut(s)	1065
BsaJI	CCNNGG	5 cut(s)	365, 555, 598, 849, 856
BsaWI	WCCGGW	1 cut(s)	790
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	797
Bse1I	ACTGG	1 cut(s)	1137
Bse21I	CCTNAGG	1 cut(s)	933
Bse3DI	GCAATG	1 cut(s)	1109
BseBI	CCWGG	1 cut(s)	366
BseCI	ATCGAT	3 cut(s)	400, 804, 1262
BseDI	CCNNGG	5 cut(s)	365, 555, 598, 849, 856
BseGI	GGATG	2 cut(s)	532, 943
BseLI	CCNNNNNNNGG	1 cut(s)	797
BseMI	GCAATG	1 cut(s)	1109
BseMII	CTCAG	5 cut(s)	901, 947, 962, 1047, 1090
BseNI	ACTGG	1 cut(s)	1137
BseXI	GCAGC	5 cut(s)	277, 613, 832, 1033, 1217
Bsh1285I	CGRYCG	1 cut(s)	660
BshFI	GGCC	3 cut(s)	532, 854, 1096
BshVI	ATCGAT	3 cut(s)	400, 804, 1262
BsiEI	CGRYCG	1 cut(s)	660
BsiHKAI	GWGCWC	1 cut(s)	1077
BsiSI	CCGG	3 cut(s)	656, 791, 981
BslI	CCNNNNNNNGG	1 cut(s)	797
BsmAI	GTCTC	3 cut(s)	118, 672, 885
BsmBI	CGTCTC	1 cut(s)	885
BsnI	GGCC	3 cut(s)	532, 854, 1096
Bsp1286I	GDGCHC	1 cut(s)	1077
Bsp1407I	TGTACA	1 cut(s)	1119
Bsp143I	GATC	5 cut(s)	397, 589, 684, 736, 805
Bsp19I	CCATGG	1 cut(s)	555
BspACI	CCGC	2 cut(s)	405, 1083
BspANI	GGCC	3 cut(s)	532, 854, 1096
BspCNI	CTCAG	5 cut(s)	900, 946, 961, 1048, 1089
BspDI	ATCGAT	3 cut(s)	400, 804, 1262
BspHI	TCATGA	1 cut(s)	1011
BspLI	GGNNCC	2 cut(s)	182, 769
BspOI	GCTAGC	1 cut(s)	1089
BspPI	GGATC	1 cut(s)	800
BsrDI	GCAATG	1 cut(s)	1109
BsrGI	TGTACA	1 cut(s)	1119
BsrI	ACTGG	1 cut(s)	1137
BssECI	CCNNGG	5 cut(s)	365, 555, 598, 849, 856
BssMI	GATC	5 cut(s)	397, 589, 684, 736, 805
BssNI	GRCGYC	1 cut(s)	1065
BssT1I	CCWWGG	3 cut(s)	555, 849, 856
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	3 cut(s)	102, 643, 772
Bst6I	CTCTTC	2 cut(s)	252, 907
BstACI	GRCGYC	1 cut(s)	1065
BstAUI	TGTACA	1 cut(s)	1119
BstC8I	GCNNGC	1 cut(s)	1087
BstDSI	CCRYGG	2 cut(s)	555, 598
BstF5I	GGATG	2 cut(s)	532, 943
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	5 cut(s)	400, 592, 687, 739, 808
BstMAI	GTCTC	3 cut(s)	118, 672, 885
BstMBI	GATC	5 cut(s)	397, 589, 684, 736, 805
BstMCI	CGRYCG	1 cut(s)	660
BstMWI	GCNNNNNNNGC	4 cut(s)	425, 485, 632, 851
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	364, 654
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	5 cut(s)	277, 613, 832, 1033, 1217
BstV2I	GAAGAC	3 cut(s)	201, 309, 975
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
Bsu15I	ATCGAT	3 cut(s)	400, 804, 1262
Bsu36I	CCTNAGG	1 cut(s)	933
BsuRI	GGCC	3 cut(s)	532, 854, 1096
BsuTUI	ATCGAT	3 cut(s)	400, 804, 1262
BtgI	CCRYGG	2 cut(s)	555, 598
BtsCI	GGATG	2 cut(s)	532, 943
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 1084
Cac8I	GCNNGC	1 cut(s)	1087
CciI	TCATGA	1 cut(s)	1011
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	530, 853
ClaI	ATCGAT	3 cut(s)	400, 804, 1262
CseI	GACGC	1 cut(s)	1054
Csp6I	GTAC	2 cut(s)	1120, 1235
CviAII	CATG	3 cut(s)	556, 682, 1012
CviQI	GTAC	2 cut(s)	1120, 1235
DpnI	GATC	5 cut(s)	399, 591, 686, 738, 807
DpnII	GATC	5 cut(s)	397, 589, 684, 736, 805
Eam1104I	CTCTTC	2 cut(s)	252, 907
EarI	CTCTTC	2 cut(s)	252, 907
Ecl136II	GAGCTC	1 cut(s)	1075
Eco130I	CCWWGG	3 cut(s)	555, 849, 856
Eco24I	GRGCYC	1 cut(s)	1077
Eco53kI	GAGCTC	1 cut(s)	1075
Eco57I	CTGAAG	1 cut(s)	276
Eco81I	CCTNAGG	1 cut(s)	933
EcoICRI	GAGCTC	1 cut(s)	1075
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	3 cut(s)	555, 849, 856
EcoT38I	GRGCYC	1 cut(s)	1077
ErhI	CCWWGG	3 cut(s)	555, 849, 856
Esp3I	CGTCTC	1 cut(s)	885
FaeI	CATG	3 cut(s)	559, 685, 1015
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FatI	CATG	3 cut(s)	555, 681, 1011
Fnu4HI	GCNGC	6 cut(s)	291, 627, 846, 1022, 1083, 1206
FokI	GGATG	2 cut(s)	539, 950
FriOI	GRGCYC	1 cut(s)	1077
Fsp4HI	GCNGC	6 cut(s)	291, 627, 846, 1022, 1083, 1206
FspBI	CTAG	4 cut(s)	86, 96, 648, 1086
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	6 cut(s)	291, 627, 846, 1022, 1083, 1206
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	532, 854, 1096
HapII	CCGG	3 cut(s)	656, 791, 981
HgaI	GACGC	1 cut(s)	1054
HhaI	GCGC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	1065
Hin1II	CATG	3 cut(s)	559, 685, 1015
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HindIII	AAGCTT	2 cut(s)	214, 390
HinfI	GANTC	3 cut(s)	89, 118, 801
HpaII	CCGG	3 cut(s)	656, 791, 981
HphI	GGTGA	4 cut(s)	310, 398, 419, 1060
Hpy166II	GTNNAC	3 cut(s)	268, 301, 838
Hpy188I	TCNGA	6 cut(s)	117, 123, 256, 776, 890, 964
Hpy8I	GTNNAC	3 cut(s)	268, 301, 838
Hpy99I	CGWCG	3 cut(s)	764, 776, 1052
HpyAV	CCTTC	4 cut(s)	240, 256, 683, 912
HpyCH4III	ACNGT	3 cut(s)	102, 643, 772
HpyCH4IV	ACGT	4 cut(s)	434, 495, 759, 894
HpyCH4V	TGCA	2 cut(s)	1021, 1205
HpyF10VI	GCNNNNNNNGC	4 cut(s)	425, 485, 632, 851
HpySE526I	ACGT	4 cut(s)	434, 495, 759, 894
Hsp92I	GRCGYC	1 cut(s)	1065
Hsp92II	CATG	3 cut(s)	559, 685, 1015
HspAI	GCGC	1 cut(s)	417
Kzo9I	GATC	5 cut(s)	397, 589, 684, 736, 805
Lsp1109I	GCAGC	5 cut(s)	277, 613, 832, 1033, 1217
LweI	GCATC	3 cut(s)	392, 613, 895
MaeI	CTAG	4 cut(s)	86, 96, 648, 1086
MaeII	ACGT	4 cut(s)	434, 495, 759, 894
MaeIII	GTNAC	2 cut(s)	988, 1066
MalI	GATC	5 cut(s)	399, 591, 686, 738, 807
MboI	GATC	5 cut(s)	397, 589, 684, 736, 805
MfeI	CAATTG	1 cut(s)	64
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	1077
MluCI	AATT	5 cut(s)	64, 195, 941, 1162, 1200
MmeI	TCCRAC	1 cut(s)	754
MnlI	CCTC	2 cut(s)	908, 942
MseI	TTAA	1 cut(s)	1026
MslI	CAYNNNNRTG	1 cut(s)	1016
MspI	CCGG	3 cut(s)	656, 791, 981
MspR9I	CCNGG	2 cut(s)	366, 656
MunI	CAATTG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	4 cut(s)	425, 485, 632, 851
NciI	CCSGG	1 cut(s)	656
NcoI	CCATGG	1 cut(s)	555
NdeII	GATC	5 cut(s)	397, 589, 684, 736, 805
NheI	GCTAGC	1 cut(s)	1085
NlaIII	CATG	3 cut(s)	559, 685, 1015
NlaIV	GGNNCC	2 cut(s)	182, 769
NmuCI	GTSAC	1 cut(s)	1066
PagI	TCATGA	1 cut(s)	1011
PcsI	WCGNNNNNNNCGW	1 cut(s)	768
PfeI	GAWTC	3 cut(s)	89, 118, 801
PkrI	GCNGC	6 cut(s)	292, 628, 847, 1023, 1084, 1207
Psp124BI	GAGCTC	1 cut(s)	1077
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	182, 769
PspPI	GGNCC	2 cut(s)	530, 853
PsuI	RGATCY	1 cut(s)	589
RsaI	GTAC	2 cut(s)	1121, 1236
RsaNI	GTAC	2 cut(s)	1120, 1235
RseI	CAYNNNNRTG	1 cut(s)	1016
SacI	GAGCTC	1 cut(s)	1077
SaqAI	TTAA	1 cut(s)	1026
SatI	GCNGC	6 cut(s)	291, 627, 846, 1022, 1083, 1206
Sau3AI	GATC	5 cut(s)	397, 589, 684, 736, 805
Sau96I	GGNCC	2 cut(s)	530, 853
ScaI	AGTACT	1 cut(s)	1236
ScrFI	CCNGG	2 cut(s)	366, 656
SduI	GDGCHC	1 cut(s)	1077
SfaNI	GCATC	3 cut(s)	392, 613, 895
SfcI	CTRYAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	1016
Sse9I	AATT	5 cut(s)	64, 195, 941, 1162, 1200
SsiI	CCGC	2 cut(s)	405, 1083
SspMI	CTAG	4 cut(s)	86, 96, 648, 1086
SstI	GAGCTC	1 cut(s)	1077
StyD4I	CCNGG	2 cut(s)	364, 654
StyI	CCWWGG	3 cut(s)	555, 849, 856
TaaI	ACNGT	3 cut(s)	102, 643, 772
TaiI	ACGT	4 cut(s)	437, 498, 762, 897
TasI	AATT	5 cut(s)	64, 195, 941, 1162, 1200
TatI	WGTACW	2 cut(s)	1119, 1234
TauI	GCSGC	1 cut(s)	1085
TfiI	GAWTC	3 cut(s)	89, 118, 801
Tru1I	TTAA	1 cut(s)	1026
Tru9I	TTAA	1 cut(s)	1026
TscAI	CASTG	2 cut(s)	24, 1084
TseFI	GTSAC	1 cut(s)	1066
TseI	GCWGC	5 cut(s)	290, 626, 845, 1021, 1205
Tsp45I	GTSAC	1 cut(s)	1066
TspDTI	ATGAA	8 cut(s)	74, 240, 531, 954, 981, 1000, 1028, 1098
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	2 cut(s)	24, 1084
XbaI	TCTAGA	2 cut(s)	85, 95
XspI	CTAG	4 cut(s)	86, 96, 648, 1086
ZrmI	AGTACT	1 cut(s)	1236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.