Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003237

Physical Location & Seq

Genomic Coordinates Forward (+)

938428 .. 942844

Gene Structure 4417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G013200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGTCTGTAGCATTACTATGGGTGGTTTCCCCCAATACAGAGGTGTTCAACTTCTTTGGGATTTTAGATTCATCAAGGTTTGCTTTGGGAAATCGAAGTTCGATTAGAGCAAAGATGGGTAGGAAACAGAAATGGAAATCTTGCTCTCTCAGTACAGATGTGAAGTATTCATCTGTAGGGAGCTCTGGCCTAGGCAGTGAAAACAAATTTCCGGTTTTATCACGCGTGGTGGCTAACCCGGTTGGAGAAATAGCTGTCTCATCTGAACAGAAGGTTTATGATGTCGTGCTAAAGCAGGCAGCCTTGGTTAAGAAGCAGTTGAACTCTAATGGAGATCTTGATGTGAAGCCTGATATTGTTCTTCCCGGGAATCTGAGCTTGTTGAGTGATGCTTATGATCGATGTGGAGAAGTATGTGCAGAGTATGCCAAGACTTTTTATCTGGGAACTCTGCTTATGACCCCTGAAAGAAGAAGGGCCATCTGGGCAATATATGTGTGGTGTAGGAGGACAGATGAGCTTGTTGATGGGCCTAACGCCTCACACATAACACCAACAGCTTTAGATAGGTGGGAGTCGAGGTTAGAAGATCTTTTCCAAGGTCGTCCATTTGATATGCTCGATGCTGCTTTGTCAGATACAGTCAACAAATTTCCCGTTGACATTCAGCCATTCAAAGATATGATAGAAGGAATGAGAATGGACCTTAGGAAGTCAATATACCAAAACTTCGATGAACTATATCTCTACTGCTATTATGTTGCTGGGACTGTTGGATTAATGAGTGTTCCAGTTATGGGCATTTCACCTGAATCACAAGCAACAACAGAGAGTGTATATAATGCTGCCTTGGCGTTAGGGATTGCGAATCAGCTCACAAACATTCTCAGGGATGTTGGGGAGGATGCAAGGAGAGGAAGAATTTATTTACCACAAGATGAACTTGCACAAGCAGGGCTTTCTGATTCTGACATATATGCTGGAAAGGTCACAGACAAGTGGAGGAGTTTCATGAAGAATCAAATTAAGAGGGCAAGGATGTTCTTCGACGAGGCAGAGAAGGGTGTGACAGAGTTGAGTGAAGCCAGCAGATGGCCGGTGTGGGCTTCCCTACTTCTATATCGCCAAATATTGGATGAGATAGAAGCTAACGATTACAACAACTTCACAAGAAGGGCTTATGTAAGCAAAGCTAAGAAATTACTTGCTTTGCCTATTGCATATACTAAATCCCTCATTCGGCCCTCAAGAACCTCTTCTTATTCAACTAGAGCTCAGAAAACTGATTCCTTGACATCAAAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00906 ko01062 ko01100 ko01110 map00906 map01062 map01100 map01110

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

436

Amino Acids

48.88

Weight (kDa)

8.73

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17230 AT5G17230 AT5G17230 AT5G17230
fragaria_vesca	FvH4_1g27480 FvH4_6g38780
malus_domestica	MD09G1146800.v1.1 MD09G1281300.v1.1 MD17G1133400.v1.1
prunus_persica	Prupe.3G013200_v2.0.a1 Prupe.3G013200_v2.0.a1 Prupe.3G178500_v2.0.a1
pyrus_communis	pycom09g06720 pycom09g18890 pycom17g12790
rosa_chinensis	RchiOBHm_Chr2g0152351 RchiOBHm_Chr3g0488531
rosa_laevigata	RLG00000020629 RLG00000022946
rosa_multiflora	Rmu_sc0005885.1_g000002 Rmu_sc0019526.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095770 Rroxscaffold_6G00394200
rosa_rugosa	Rorug02G0432500 Rorug03G0238700 Rorug03G0238800 Rorug03G0238900 Rorug03G0239000
rosa_samantha	Rh2AG494000 Rh2BG506300 Rh2CG480300 Rh2DG517400 Rh3AG287700 Rh3CG321800 Rh3DG320600
rosa_wichuraiana	Rw2G040650 Rw3G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1092, 1132
AccII	CGCG	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	1094
AcsI	RAATTY	3 cut(s)	206, 650, 921
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	4 cut(s)	797, 1092, 1132, 1239
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	49, 322, 676, 1266
AluBI	AGCT	9 cut(s)	183, 254, 378, 520, 560, 874, 1148, 1193, 1274
AluI	AGCT	9 cut(s)	183, 254, 378, 520, 560, 874, 1148, 1193, 1274
Alw21I	GWGCWC	2 cut(s)	185, 1276
Alw26I	GTCTC	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	5 cut(s)	187, 477, 530, 1094, 1241
ApeKI	GCWGC	3 cut(s)	299, 626, 845
ApoI	RAATTY	3 cut(s)	206, 650, 921
AseI	ATTAAT	1 cut(s)	779
Asp700I	GAANNNNTTC	1 cut(s)	1255
AspA2I	CCTAGG	1 cut(s)	190
AspS9I	GGNCC	4 cut(s)	477, 530, 703, 1242
AsuC2I	CCSGG	3 cut(s)	239, 366, 367
AsuHPI	GGTGA	1 cut(s)	798
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	703
AvrII	CCTAGG	1 cut(s)	190
AxyI	CCTNAGG	1 cut(s)	707
BanII	GRGCYC	2 cut(s)	185, 1276
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
Bbv12I	GWGCWC	2 cut(s)	185, 1276
BbvI	GCAGC	3 cut(s)	311, 613, 832
BccI	CCATC	4 cut(s)	109, 488, 521, 1086
BcnI	CCSGG	3 cut(s)	239, 366, 367
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	3 cut(s)	191, 1269, 1306
BfmI	CTRYAG	2 cut(s)	6, 174
BglI	GCCNNNNNGGC	1 cut(s)	485
BglII	AGATCT	2 cut(s)	334, 589
BisI	GCNGC	3 cut(s)	300, 627, 846
BlnI	CCTAGG	1 cut(s)	190
BlsI	GCNGC	3 cut(s)	301, 628, 847
Bme1390I	CCNGG	3 cut(s)	239, 366, 367
Bme18I	GGWCC	1 cut(s)	703
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	4 cut(s)	477, 530, 703, 1242
BmrFI	CCNGG	3 cut(s)	239, 366, 367
BmsI	GCATC	3 cut(s)	379, 613, 895
BpuEI	CTTGAG	1 cut(s)	1231
BpuMI	CCSGG	3 cut(s)	239, 366, 367
Bsa29I	ATCGAT	1 cut(s)	400
BsaJI	CCNNGG	5 cut(s)	190, 303, 365, 598, 849
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	4 cut(s)	797, 1092, 1132, 1239
Bse118I	RCCGGY	1 cut(s)	1096
Bse1I	ACTGG	1 cut(s)	791
Bse21I	CCTNAGG	1 cut(s)	707
BseCI	ATCGAT	1 cut(s)	400
BseDI	CCNNGG	5 cut(s)	190, 303, 365, 598, 849
BseGI	GGATG	4 cut(s)	898, 910, 1044, 1141
BseLI	CCNNNNNNNGG	4 cut(s)	797, 1092, 1132, 1239
BseMII	CTCAG	4 cut(s)	163, 365, 901, 1289
BseNI	ACTGG	1 cut(s)	791
BseRI	GAGGAG	1 cut(s)	1018
BseXI	GCAGC	3 cut(s)	311, 613, 832
BseYI	CCCAGC	1 cut(s)	764
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	5 cut(s)	189, 479, 532, 1096, 1243
BshVI	ATCGAT	1 cut(s)	400
BsiHKAI	GWGCWC	2 cut(s)	185, 1276
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	4 cut(s)	212, 239, 366, 1097
BslFI	GGGAC	1 cut(s)	781
BslI	CCNNNNNNNGG	4 cut(s)	797, 1092, 1132, 1239
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	781
BsnI	GGCC	5 cut(s)	189, 479, 532, 1096, 1243
BsoBI	CYCGRG	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	185, 1276
Bsp143I	GATC	3 cut(s)	334, 397, 589
BspANI	GGCC	5 cut(s)	189, 479, 532, 1096, 1243
BspCNI	CTCAG	4 cut(s)	162, 366, 900, 1288
BspDI	ATCGAT	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	1011
BsrFI	RCCGGY	1 cut(s)	1096
BsrI	ACTGG	1 cut(s)	791
BssAI	RCCGGY	1 cut(s)	1096
BssECI	CCNNGG	5 cut(s)	190, 303, 365, 598, 849
BssMI	GATC	3 cut(s)	334, 397, 589
BssT1I	CCWWGG	4 cut(s)	190, 303, 598, 849
Bst4CI	ACNGT	2 cut(s)	643, 772
Bst6I	CTCTTC	1 cut(s)	1261
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	297, 1087
BstDEI	CTNAG	6 cut(s)	149, 374, 707, 887, 1194, 1275
BstF5I	GGATG	4 cut(s)	898, 910, 1044, 1141
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	3 cut(s)	337, 400, 592
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	3 cut(s)	334, 397, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 485, 851
BstSCI	CCNGG	3 cut(s)	237, 364, 365
BstSFI	CTRYAG	2 cut(s)	6, 174
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	311, 613, 832
BstX2I	RGATCY	2 cut(s)	334, 589
BstYI	RGATCY	2 cut(s)	334, 589
Bsu15I	ATCGAT	1 cut(s)	400
Bsu36I	CCTNAGG	1 cut(s)	707
BsuRI	GGCC	5 cut(s)	189, 479, 532, 1096, 1243
BsuTUI	ATCGAT	1 cut(s)	400
BtsCI	GGATG	4 cut(s)	898, 910, 1044, 1141
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	297, 1087
CciI	TCATGA	1 cut(s)	1011
Cfr10I	RCCGGY	1 cut(s)	1096
Cfr13I	GGNCC	4 cut(s)	477, 530, 703, 1242
Cfr9I	CCCGGG	1 cut(s)	365
ClaI	ATCGAT	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	1 cut(s)	1012
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	6 cut(s)	149, 374, 707, 887, 1194, 1275
DpnI	GATC	3 cut(s)	336, 399, 591
DpnII	GATC	3 cut(s)	334, 397, 589
EaeI	YGGCCR	1 cut(s)	1094
Eam1104I	CTCTTC	1 cut(s)	1261
EarI	CTCTTC	1 cut(s)	1261
Ecl136II	GAGCTC	2 cut(s)	183, 1274
Eco130I	CCWWGG	4 cut(s)	190, 303, 598, 849
Eco24I	GRGCYC	2 cut(s)	185, 1276
Eco47I	GGWCC	1 cut(s)	703
Eco53kI	GAGCTC	2 cut(s)	183, 1274
Eco81I	CCTNAGG	1 cut(s)	707
Eco88I	CYCGRG	1 cut(s)	365
EcoICRI	GAGCTC	2 cut(s)	183, 1274
EcoT14I	CCWWGG	4 cut(s)	190, 303, 598, 849
EcoT38I	GRGCYC	2 cut(s)	185, 1276
ErhI	CCWWGG	4 cut(s)	190, 303, 598, 849
FaeI	CATG	1 cut(s)	1015
FaqI	GGGAC	1 cut(s)	781
FatI	CATG	1 cut(s)	1011
Fnu4HI	GCNGC	3 cut(s)	300, 627, 846
FokI	GGATG	4 cut(s)	905, 917, 1051, 1148
FriOI	GRGCYC	2 cut(s)	185, 1276
Fsp4HI	GCNGC	3 cut(s)	300, 627, 846
FspBI	CTAG	3 cut(s)	191, 1269, 1306
GluI	GCNGC	3 cut(s)	300, 627, 846
GsaI	CCCAGC	1 cut(s)	768
HaeIII	GGCC	5 cut(s)	189, 479, 532, 1096, 1243
HapII	CCGG	4 cut(s)	212, 239, 366, 1097
Hin1II	CATG	1 cut(s)	1015
HincII	GTYRAC	2 cut(s)	646, 661
HindII	GTYRAC	2 cut(s)	646, 661
HinfI	GANTC	8 cut(s)	68, 370, 575, 812, 868, 965, 1018, 1286
HpaII	CCGG	4 cut(s)	212, 239, 366, 1097
HphI	GGTGA	1 cut(s)	798
Hpy166II	GTNNAC	2 cut(s)	646, 661
Hpy188I	TCNGA	6 cut(s)	265, 375, 637, 964, 970, 1278
Hpy188III	TCNNGA	3 cut(s)	338, 1012, 1248
Hpy8I	GTNNAC	2 cut(s)	646, 661
Hpy99I	CGWCG	1 cut(s)	1052
HpyAV	CCTTC	5 cut(s)	265, 468, 683, 1054, 1167
HpyCH4III	ACNGT	2 cut(s)	643, 772
HpyCH4V	TGCA	4 cut(s)	419, 908, 947, 1220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 485, 851
HpyF3I	CTNAG	6 cut(s)	149, 374, 707, 887, 1194, 1275
Hsp92II	CATG	1 cut(s)	1015
Kzo9I	GATC	3 cut(s)	334, 397, 589
LmnI	GCTCC	1 cut(s)	180
Lsp1109I	GCAGC	3 cut(s)	311, 613, 832
LweI	GCATC	3 cut(s)	379, 613, 895
MaeI	CTAG	3 cut(s)	191, 1269, 1306
MaeIII	GTNAC	2 cut(s)	988, 1066
MalI	GATC	3 cut(s)	336, 399, 591
MboI	GATC	3 cut(s)	334, 397, 589
MboII	GAAGA	7 cut(s)	353, 483, 599, 930, 1027, 1036, 1248
MflI	RGATCY	2 cut(s)	334, 589
MhlI	GDGCHC	2 cut(s)	185, 1276
MluCI	AATT	5 cut(s)	206, 650, 921, 1023, 1199
MluI	ACGCGT	1 cut(s)	223
MlyI	GAGTC	1 cut(s)	584
MmeI	TCCRAC	2 cut(s)	223, 754
MroXI	GAANNNNTTC	1 cut(s)	1255
MseI	TTAA	3 cut(s)	309, 779, 1026
MslI	CAYNNNNRTG	1 cut(s)	16
MspI	CCGG	4 cut(s)	212, 239, 366, 1097
MspR9I	CCNGG	3 cut(s)	239, 366, 367
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	425, 485, 851
NciI	CCSGG	3 cut(s)	239, 366, 367
NdeII	GATC	3 cut(s)	334, 397, 589
NlaIII	CATG	1 cut(s)	1015
NmuCI	GTSAC	2 cut(s)	988, 1066
PagI	TCATGA	1 cut(s)	1011
PdmI	GAANNNNTTC	1 cut(s)	1255
PfeI	GAWTC	7 cut(s)	68, 370, 812, 868, 965, 1018, 1286
PflMI	CCANNNNNTGG	2 cut(s)	1092, 1132
PkrI	GCNGC	3 cut(s)	301, 628, 847
PleI	GAGTC	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	583
PshBI	ATTAAT	1 cut(s)	779
Psp124BI	GAGCTC	2 cut(s)	185, 1276
PspFI	CCCAGC	1 cut(s)	764
PspPI	GGNCC	4 cut(s)	477, 530, 703, 1242
PsuI	RGATCY	2 cut(s)	334, 589
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	16
SacI	GAGCTC	2 cut(s)	185, 1276
SaqAI	TTAA	3 cut(s)	309, 779, 1026
SatI	GCNGC	3 cut(s)	300, 627, 846
Sau3AI	GATC	3 cut(s)	334, 397, 589
Sau96I	GGNCC	4 cut(s)	477, 530, 703, 1242
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	3 cut(s)	239, 366, 367
SduI	GDGCHC	2 cut(s)	185, 1276
SfaNI	GCATC	3 cut(s)	379, 613, 895
SfcI	CTRYAG	2 cut(s)	6, 174
SinI	GGWCC	1 cut(s)	703
SmaI	CCCGGG	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	1246
SmoI	CTYRAG	1 cut(s)	1246
Sse9I	AATT	5 cut(s)	206, 650, 921, 1023, 1199
SspI	AATATT	1 cut(s)	1131
SspMI	CTAG	3 cut(s)	191, 1269, 1306
SstI	GAGCTC	2 cut(s)	185, 1276
StyD4I	CCNGG	3 cut(s)	237, 364, 365
StyI	CCWWGG	4 cut(s)	190, 303, 598, 849
TaaI	ACNGT	2 cut(s)	643, 772
TaqI	TCGA	7 cut(s)	94, 101, 400, 578, 621, 732, 1047
TasI	AATT	5 cut(s)	206, 650, 921, 1023, 1199
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	7 cut(s)	68, 370, 812, 868, 965, 1018, 1286
Tru1I	TTAA	3 cut(s)	309, 779, 1026
Tru9I	TTAA	3 cut(s)	309, 779, 1026
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	2 cut(s)	988, 1066
TseI	GCWGC	3 cut(s)	299, 626, 845
Tsp45I	GTSAC	2 cut(s)	988, 1066
TspDTI	ATGAA	6 cut(s)	60, 159, 750, 954, 1000, 1028
TspMI	CCCGGG	1 cut(s)	365
TspRI	CASTG	1 cut(s)	202
Van91I	CCANNNNNTGG	2 cut(s)	1092, 1132
VpaK11BI	GGWCC	1 cut(s)	703
VspI	ATTAAT	1 cut(s)	779
XapI	RAATTY	3 cut(s)	206, 650, 921
XmaI	CCCGGG	1 cut(s)	365
XmaJI	CCTAGG	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	1255
XspI	CTAG	3 cut(s)	191, 1269, 1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.