Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003237

Physical Location & Seq

Genomic Coordinates Reverse (-)

35841522 .. 35845626

Gene Structure 4105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1281300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGTCTGTGGCATTAGTTTGGGTTGTTTCCCCCAACACCGAGGTGTTCAAATTCTATGGGATTTTAGATTCATCGAGGTTTGTTTTTGGGAATCGAAGTTCGATTAGAGCAAAGATGGGTGGGAAACAGGATTGGAAATCTTGCTCTCTCAGCACAGATGTGAAGTATTCATCAGTAGGAGGGTCTGGTTTAGGGAGTGAAGCCAAATTTCCAGTTTCATTAAGCATGGTGGCCAACCCGCTTGGAGAATCAGCTGTCTCGTCGGAACAGAAGGTGTATGACGTGGTGCTGAAGCAGGCATCCCTGGTTAAGAAGCAGTTGAGGTCTAATGGATATCTTGATGTGAAGCCGGATATTATTCTTCCCGGGAATCTGAGCTTGTTGAGTAAAGCTTATGATCGATGTGGAGAAGTATGTGCAGAGTATGCCAAGACTTTTTACCTCGGTACTCTGCTTATGACGCCCGAAAGAAGAAGGGCCATCTGGGCAATATATGTGTGGTGCAGGAGGACGGATGAGCTTGTTGATGGGCCTAATGCTTCACACATAACACCCACAGCTTTAGATAGGTGGGAATTGAGATTGGACGATCTGTTCCAAGGTCGTCCATTTGATATGCTTGATGCTGCTTTGTCAGATACGGTCACCAAATTTCCGGTTGACATTCAGCCATTCAAAGATATGATAGAAGGAATGAGAATGGACCTCAGGAAGTCAAGATACCAAAACTTCGATGAACTATATCTTTACTGCTATTATGTTGCCGGAACTGTTGGATTAATGAGTGTTCCAGTTATGGGCATTTCACCTGAATCGCAAGCAACAACGGAGAGTGTATATAATGCTGCCTTGGCATTAGGGATTGCGAATCAGCTAACAAACATACTCCGTGATGTTGGGGAGGATGCAAGGAGAGGAAGAATTTATTTACCCCAAGATGAGCTTGAAGAAGCAGGGCTCTCCGACGCTGATATATATGCTGGAAAGGTCACAGACAAATGGAGGAGTTTCATGAAGGATCAAATTAAGAGGGCAAGGATGTTCTTCGACGAGGCAGAGAAGGGAGTGACAGAGTTGAGTGAAGCCAGCAGATGGCCGGTATTGGCGTCGCTACTCCTGTATCGCCAAATATTGGACGAGATAGAAGCTAACGATTACAACAACTTCACAAGAAGGGCTTATGTAAGCAAAGCTAAGAAACTACTTGCCTTGCCTATTGCGTATACTAAATCGATAATTCGCCCCTCAAGAACCTCTCCAGAGCTTAGAAAATACAATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00906 ko01062 ko01100 ko01110 map00906 map01062 map01100 map01110

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

428

Amino Acids

48.13

Weight (kDa)

8.37

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQS_PSY	PF00494	141 - 398	3.1e-80	Squalene/phytoene synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17230 AT5G17230 AT5G17230 AT5G17230
fragaria_vesca	FvH4_1g27480 FvH4_6g38780
malus_domestica	MD09G1146800.v1.1 MD09G1281300.v1.1 MD17G1133400.v1.1
prunus_persica	Prupe.3G013200_v2.0.a1 Prupe.3G013200_v2.0.a1 Prupe.3G178500_v2.0.a1
pyrus_communis	pycom09g06720 pycom09g18890 pycom17g12790
rosa_chinensis	RchiOBHm_Chr2g0152351 RchiOBHm_Chr3g0488531
rosa_laevigata	RLG00000020629 RLG00000022946
rosa_multiflora	Rmu_sc0005885.1_g000002 Rmu_sc0019526.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095770 Rroxscaffold_6G00394200
rosa_rugosa	Rorug02G0432500 Rorug03G0238700 Rorug03G0238800 Rorug03G0238900 Rorug03G0239000
rosa_samantha	Rh2AG494000 Rh2BG506300 Rh2CG480300 Rh2DG517400 Rh3AG287700 Rh3CG321800 Rh3DG320600
rosa_wichuraiana	Rw2G040650 Rw3G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1092, 1132
AccI	GTMKAC	1 cut(s)	1223
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	1 cut(s)	1026
AcoI	YGGCCR	2 cut(s)	231, 1094
AcsI	RAATTY	4 cut(s)	50, 206, 650, 921
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	2 cut(s)	461, 1106
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	3 cut(s)	797, 1092, 1132
AgsI	TTSAA	3 cut(s)	49, 676, 947
AjiI	CACGTC	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	303
AleI	CACNNNNGTG	2 cut(s)	41, 158
AloI	GAACNNNNNNTCC	4 cut(s)	82, 114, 578, 610
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	1026
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	4 cut(s)	231, 477, 530, 1094
ApeKI	GCWGC	2 cut(s)	626, 845
ApoI	RAATTY	4 cut(s)	50, 206, 650, 921
AseI	ATTAAT	1 cut(s)	779
AspS9I	GGNCC	3 cut(s)	477, 530, 703
AsuC2I	CCSGG	2 cut(s)	366, 367
AsuHPI	GGTGA	2 cut(s)	637, 798
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	703
AxyI	CCTNAGG	1 cut(s)	707
BaeI	ACNNNNGTAYC	2 cut(s)	1103, 1136
BalI	TGGCCA	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	960
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
BbvI	GCAGC	2 cut(s)	613, 832
BccI	CCATC	4 cut(s)	109, 488, 521, 1086
BciT130I	CCWGG	1 cut(s)	305
BcnI	CCSGG	2 cut(s)	366, 367
BcoDI	GTCTC	1 cut(s)	262
BglI	GCCNNNNNGGC	1 cut(s)	485
BisI	GCNGC	2 cut(s)	627, 846
BlsI	GCNGC	2 cut(s)	628, 847
Bme1390I	CCNGG	3 cut(s)	305, 366, 367
Bme18I	GGWCC	1 cut(s)	703
BmeT110I	CYCGRG	1 cut(s)	365
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	3 cut(s)	477, 530, 703
BmrFI	CCNGG	3 cut(s)	305, 366, 367
BmsI	GCATC	3 cut(s)	308, 613, 895
BpmI	CTGGAG	1 cut(s)	1242
BpuEI	CTTGAG	1 cut(s)	1231
BpuMI	CCSGG	2 cut(s)	366, 367
Bsa29I	ATCGAT	2 cut(s)	400, 1232
BsaHI	GRCGYC	2 cut(s)	461, 1106
BsaJI	CCNNGG	6 cut(s)	39, 303, 365, 442, 598, 849
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	3 cut(s)	797, 1092, 1132
Bse118I	RCCGGY	1 cut(s)	1096
Bse1I	ACTGG	2 cut(s)	212, 791
Bse21I	CCTNAGG	1 cut(s)	707
BseBI	CCWGG	1 cut(s)	305
BseCI	ATCGAT	2 cut(s)	400, 1232
BseDI	CCNNGG	6 cut(s)	39, 303, 365, 442, 598, 849
BseGI	GGATG	4 cut(s)	299, 520, 910, 1044
BseLI	CCNNNNNNNGG	3 cut(s)	797, 1092, 1132
BseMII	CTCAG	3 cut(s)	163, 365, 721
BseNI	ACTGG	2 cut(s)	212, 791
BseRI	GAGGAG	1 cut(s)	1018
BseXI	GCAGC	2 cut(s)	613, 832
BsgI	GTGCAG	2 cut(s)	438, 523
BshFI	GGCC	4 cut(s)	233, 479, 532, 1096
BshVI	ATCGAT	2 cut(s)	400, 1232
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	5 cut(s)	350, 366, 656, 765, 1097
BslI	CCNNNNNNNGG	3 cut(s)	797, 1092, 1132
BsmAI	GTCTC	1 cut(s)	262
BsnI	GGCC	4 cut(s)	233, 479, 532, 1096
BsoBI	CYCGRG	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	960
Bsp143I	GATC	3 cut(s)	397, 589, 1018
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	4 cut(s)	233, 479, 532, 1096
BspCNI	CTCAG	3 cut(s)	162, 366, 720
BspDI	ATCGAT	2 cut(s)	400, 1232
BspHI	TCATGA	1 cut(s)	1011
BspPI	GGATC	1 cut(s)	1026
BsrFI	RCCGGY	1 cut(s)	1096
BsrI	ACTGG	2 cut(s)	212, 791
BssAI	RCCGGY	1 cut(s)	1096
BssECI	CCNNGG	6 cut(s)	39, 303, 365, 442, 598, 849
BssMI	GATC	3 cut(s)	397, 589, 1018
BssNAI	GTATAC	1 cut(s)	1224
BssNI	GRCGYC	2 cut(s)	461, 1106
BssT1I	CCWWGG	2 cut(s)	598, 849
Bst1107I	GTATAC	1 cut(s)	1224
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	643, 772
BstACI	GRCGYC	2 cut(s)	461, 1106
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	297, 819, 1087
BstDEI	CTNAG	5 cut(s)	149, 374, 707, 1194, 1265
BstEII	GGTNACC	1 cut(s)	643
BstF5I	GGATG	4 cut(s)	299, 520, 910, 1044
BstKTI	GATC	3 cut(s)	400, 592, 1021
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	3 cut(s)	397, 589, 1018
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 425, 460, 485, 851
BstNI	CCWGG	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	643
BstSCI	CCNGG	3 cut(s)	303, 364, 365
BstV1I	GCAGC	2 cut(s)	613, 832
BstZ17I	GTATAC	1 cut(s)	1224
Bsu15I	ATCGAT	2 cut(s)	400, 1232
Bsu36I	CCTNAGG	1 cut(s)	707
BsuRI	GGCC	4 cut(s)	233, 479, 532, 1096
BsuTUI	ATCGAT	2 cut(s)	400, 1232
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	4 cut(s)	299, 520, 910, 1044
Cac8I	GCNNGC	3 cut(s)	297, 819, 1087
CciI	TCATGA	1 cut(s)	1011
Cfr10I	RCCGGY	1 cut(s)	1096
Cfr13I	GGNCC	3 cut(s)	477, 530, 703
Cfr9I	CCCGGG	1 cut(s)	365
ClaI	ATCGAT	2 cut(s)	400, 1232
CseI	GACGC	3 cut(s)	469, 974, 1095
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	2 cut(s)	226, 1012
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	5 cut(s)	149, 374, 707, 1194, 1265
DpnI	GATC	3 cut(s)	399, 591, 1020
DpnII	GATC	3 cut(s)	397, 589, 1018
EaeI	YGGCCR	2 cut(s)	231, 1094
Eco130I	CCWWGG	2 cut(s)	598, 849
Eco24I	GRGCYC	1 cut(s)	960
Eco32I	GATATC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	703
Eco57I	CTGAAG	1 cut(s)	311
Eco81I	CCTNAGG	1 cut(s)	707
Eco88I	CYCGRG	1 cut(s)	365
Eco91I	GGTNACC	1 cut(s)	643
EcoO65I	GGTNACC	1 cut(s)	643
EcoRII	CCWGG	1 cut(s)	303
EcoRV	GATATC	1 cut(s)	335
EcoT14I	CCWWGG	2 cut(s)	598, 849
EcoT38I	GRGCYC	1 cut(s)	960
ErhI	CCWWGG	2 cut(s)	598, 849
FaeI	CATG	2 cut(s)	229, 1015
FalI	AAGNNNNNCTT	4 cut(s)	927, 959, 1162, 1194
FatI	CATG	2 cut(s)	225, 1011
FauI	CCCGC	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	1223
Fnu4HI	GCNGC	2 cut(s)	627, 846
FokI	GGATG	4 cut(s)	286, 527, 917, 1051
FriOI	GRGCYC	1 cut(s)	960
Fsp4HI	GCNGC	2 cut(s)	627, 846
GluI	GCNGC	2 cut(s)	627, 846
GsuI	CTGGAG	1 cut(s)	1242
HaeIII	GGCC	4 cut(s)	233, 479, 532, 1096
HapII	CCGG	5 cut(s)	350, 366, 656, 765, 1097
HgaI	GACGC	3 cut(s)	469, 974, 1095
Hin1I	GRCGYC	2 cut(s)	461, 1106
Hin1II	CATG	2 cut(s)	229, 1015
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	6 cut(s)	68, 91, 248, 370, 812, 868
HpaII	CCGG	5 cut(s)	350, 366, 656, 765, 1097
HphI	GGTGA	2 cut(s)	637, 798
Hpy166II	GTNNAC	2 cut(s)	661, 1224
Hpy188I	TCNGA	4 cut(s)	265, 375, 637, 964
Hpy188III	TCNNGA	6 cut(s)	338, 709, 717, 1012, 1248, 1259
Hpy8I	GTNNAC	2 cut(s)	661, 1224
Hpy99I	CGWCG	4 cut(s)	265, 968, 1052, 1111
HpyAV	CCTTC	6 cut(s)	265, 468, 683, 1009, 1054, 1167
HpyCH4III	ACNGT	2 cut(s)	643, 772
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	3 cut(s)	419, 504, 908
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 425, 460, 485, 851
HpyF3I	CTNAG	5 cut(s)	149, 374, 707, 1194, 1265
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	2 cut(s)	461, 1106
Hsp92II	CATG	2 cut(s)	229, 1015
Kzo9I	GATC	3 cut(s)	397, 589, 1018
Lsp1109I	GCAGC	2 cut(s)	613, 832
LweI	GCATC	3 cut(s)	308, 613, 895
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	3 cut(s)	643, 988, 1066
MalI	GATC	3 cut(s)	399, 591, 1020
MboI	GATC	3 cut(s)	397, 589, 1018
MboII	GAAGA	5 cut(s)	353, 483, 930, 959, 1036
MhlI	GDGCHC	1 cut(s)	960
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	7 cut(s)	50, 206, 575, 650, 921, 1023, 1236
MluNI	TGGCCA	1 cut(s)	233
MmeI	TCCRAC	3 cut(s)	243, 754, 987
Mox20I	TGGCCA	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	4 cut(s)	221, 309, 779, 1026
MslI	CAYNNNNRTG	2 cut(s)	41, 158
Msp20I	TGGCCA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	5 cut(s)	350, 366, 656, 765, 1097
MspR9I	CCNGG	3 cut(s)	305, 366, 367
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	5 cut(s)	150, 425, 460, 485, 851
NciI	CCSGG	2 cut(s)	366, 367
NdeII	GATC	3 cut(s)	397, 589, 1018
NlaIII	CATG	2 cut(s)	229, 1015
NmuCI	GTSAC	3 cut(s)	643, 988, 1066
OliI	CACNNNNGTG	2 cut(s)	41, 158
PagI	TCATGA	1 cut(s)	1011
PfeI	GAWTC	6 cut(s)	68, 91, 248, 370, 812, 868
PflMI	CCANNNNNTGG	2 cut(s)	1092, 1132
PkrI	GCNGC	2 cut(s)	628, 847
PshBI	ATTAAT	1 cut(s)	779
Psp6I	CCWGG	1 cut(s)	303
PspEI	GGTNACC	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	303
PspPI	GGNCC	3 cut(s)	477, 530, 703
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
RseI	CAYNNNNRTG	2 cut(s)	41, 158
SaqAI	TTAA	4 cut(s)	221, 309, 779, 1026
SatI	GCNGC	2 cut(s)	627, 846
Sau3AI	GATC	3 cut(s)	397, 589, 1018
Sau96I	GGNCC	3 cut(s)	477, 530, 703
ScrFI	CCNGG	3 cut(s)	305, 366, 367
SduI	GDGCHC	1 cut(s)	960
SfaNI	GCATC	3 cut(s)	308, 613, 895
SinI	GGWCC	1 cut(s)	703
SmaI	CCCGGG	1 cut(s)	367
SmiMI	CAYNNNNRTG	2 cut(s)	41, 158
SmlI	CTYRAG	1 cut(s)	1246
SmoI	CTYRAG	1 cut(s)	1246
Sse9I	AATT	7 cut(s)	50, 206, 575, 650, 921, 1023, 1236
SsiI	CCGC	1 cut(s)	239
SspI	AATATT	1 cut(s)	1131
StyD4I	CCNGG	3 cut(s)	303, 364, 365
StyI	CCWWGG	2 cut(s)	598, 849
TaaI	ACNGT	2 cut(s)	643, 772
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	7 cut(s)	74, 94, 101, 400, 732, 1047, 1232
TasI	AATT	7 cut(s)	50, 206, 575, 650, 921, 1023, 1236
TfiI	GAWTC	6 cut(s)	68, 91, 248, 370, 812, 868
Tru1I	TTAA	4 cut(s)	221, 309, 779, 1026
Tru9I	TTAA	4 cut(s)	221, 309, 779, 1026
TseFI	GTSAC	3 cut(s)	643, 988, 1066
TseI	GCWGC	2 cut(s)	626, 845
Tsp45I	GTSAC	3 cut(s)	643, 988, 1066
TspDTI	ATGAA	6 cut(s)	60, 159, 207, 750, 1000, 1028
TspGWI	ACGGA	3 cut(s)	527, 842, 878
TspMI	CCCGGG	1 cut(s)	365
Van91I	CCANNNNNTGG	2 cut(s)	1092, 1132
VpaK11BI	GGWCC	1 cut(s)	703
VspI	ATTAAT	1 cut(s)	779
XapI	RAATTY	4 cut(s)	50, 206, 650, 921
XmaI	CCCGGG	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.