Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003237

Physical Location & Seq

Genomic Coordinates Reverse (-)

55380867 .. 55382090

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0432500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTTTGGGTTTTGTTGTAAGAGATTGCAATTATTAGTTCCAAGCTGTAGCACCATTTCTGTTGATTCTTCAGTGACCCATTTTCCAAAGGCATCTCCTTTTAGCAGATCATATTCATCATTATTAGGATCTGCAATAGATGATAAACCCCAAGGTCGCTCTTTTACAGTTTCATATCTTATAAACTCATGTGGGTTGTCCCCAGAACTTGCTCTCTCTTTGTCCAAGAAGCGAGGAGTGCACTTCAAATCCCGAGAAAAACCAGACTCGGTCATTAAGCTTCTGAAACACTATGGATTCAGTGATACCCATGTCTCCCAAATTGTTAAGAAACTCCCAACCCTTCTCTTAGTCAATGCTAAAAAGACCCTTGTCCCCAAACTTGAGTTTCTTGGTTCCATTGGAATTACAGGCACTGACCTTACTCGGCTCGTTTGCGGCAGCCCAAATGTTTTGTCCTATAGCCTCGACAATAATCTCAGGCCTTGTTACGATGTCATCAGAACTCTACCTATCGGTGACGAAAAGGTTGGTCTCTTCATGAGGAATTCGTGTCGGATACTGAATGTCAAAGCACTAAGCAATGCTGCTAGCAATGTGTCATTTCTGAGATCACTTCAAGTGCCAGAATCCTCAATCACTTTGTGTGCCCTCTATTATCTTATTGCAGTATCCCGCGACACTGCCAAGTTTAGGGATTATGTAGGGAAGGTCATCAGTATGGGATTTATCCCTTCATCCACAACCTTTGTGAGAGCCGTGTATGTGATTTCTATGATGAATGGATCAAAATGGGCACAAAGGGTGGGATTTTACAGGAAGTGGGGTTGGGCTGAAGATGATGTACTGTCTGCGTTTAGAAAGAGTCCCACGTTTATGTTCTTGAGTGAGGAGAATGTTTCCATTAAATTGGATTTTTATTTGAACAAAATGGGTTGGCAGCCAGCCAATGTAGCTCAACATCCCGCTGTTCTAACTTATAGTTTGGAGAAGTGGATCATACCTAGGTGTTCGGTTATTAGAATTCTGCTGTTGAAGGGCTTAATAAGGAAGGGAGAATATTCTATTGCTTCCATGATGTTCAGAAGAGACCAGTTCTTGGATAGGTTTGTGAACAAGTATCAAGAGGAAGTACCTGAATTATTGAGCATCTATCAAGGGAAAATTGGTCTAGCGGAACTGGGCTTAGGATTTGAGGAAAAAGAAGGAGTGAAAGAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00906 ko01062 ko01100 ko01110 map00906 map01062 map01100 map01110

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

407

Amino Acids

45.68

Weight (kDa)

9.51

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	92 - 292	2.4e-20	mTERF
mTERF	PF02536	262 - 364	1.7e-15	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17230 AT5G17230 AT5G17230 AT5G17230
fragaria_vesca	FvH4_1g27480 FvH4_6g38780
malus_domestica	MD09G1146800.v1.1 MD09G1281300.v1.1 MD17G1133400.v1.1
prunus_persica	Prupe.3G013200_v2.0.a1 Prupe.3G013200_v2.0.a1 Prupe.3G178500_v2.0.a1
pyrus_communis	pycom09g06720 pycom09g18890 pycom17g12790
rosa_chinensis	RchiOBHm_Chr2g0152351 RchiOBHm_Chr3g0488531
rosa_laevigata	RLG00000020629 RLG00000022946
rosa_multiflora	Rmu_sc0005885.1_g000002 Rmu_sc0019526.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095770 Rroxscaffold_6G00394200
rosa_rugosa	Rorug02G0432500 Rorug03G0238700 Rorug03G0238800 Rorug03G0238900 Rorug03G0239000
rosa_samantha	Rh2AG494000 Rh2BG506300 Rh2CG480300 Rh2DG517400 Rh3AG287700 Rh3CG321800 Rh3DG320600
rosa_wichuraiana	Rw2G040650 Rw3G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AccB7I	CCANNNNNTGG	1 cut(s)	1099
AccII	CGCG	1 cut(s)	678
AciI	CCGC	4 cut(s)	438, 676, 966, 1175
AclWI	GGATC	3 cut(s)	136, 793, 1004
AcsI	RAATTY	2 cut(s)	547, 1023
AcuI	CTGAAG	2 cut(s)	54, 855
AdeI	CACNNNGTG	1 cut(s)	645
AfaI	GTAC	2 cut(s)	846, 1134
AfiI	CCNNNNNNNGG	2 cut(s)	693, 1099
AgsI	TTSAA	4 cut(s)	247, 620, 925, 1036
AluBI	AGCT	3 cut(s)	45, 280, 956
AluI	AGCT	3 cut(s)	45, 280, 956
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	3 cut(s)	319, 539, 1083
Alw44I	GTGCAC	1 cut(s)	239
AlwI	GGATC	3 cut(s)	136, 793, 1004
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	1 cut(s)	482
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	3 cut(s)	441, 587, 940
ApoI	RAATTY	2 cut(s)	547, 1023
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AspA2I	CCTAGG	1 cut(s)	1004
AsuHPI	GGTGA	1 cut(s)	530
AsuNHI	GCTAGC	1 cut(s)	590
AvaI	CYCGRG	1 cut(s)	252
AvrII	CCTAGG	1 cut(s)	1004
BaeGI	GKGCMC	3 cut(s)	243, 652, 799
BaeI	ACNNNNGTAYC	2 cut(s)	297, 330
BarI	GAAGNNNNNNTAC	2 cut(s)	828, 860
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	453, 574, 952
BceAI	ACGGC	1 cut(s)	743
BciVI	GTATCC	2 cut(s)	552, 682
BcoDI	GTCTC	3 cut(s)	319, 539, 1083
BfaI	CTAG	3 cut(s)	591, 1005, 1172
BfmI	CTRYAG	2 cut(s)	46, 460
BfuI	GTATCC	2 cut(s)	552, 682
BisI	GCNGC	4 cut(s)	439, 442, 588, 941
BlnI	CCTAGG	1 cut(s)	1004
BlsI	GCNGC	4 cut(s)	440, 443, 589, 942
BmeT110I	CYCGRG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	397
BmrI	ACTGGG	1 cut(s)	1190
BmsI	GCATC	2 cut(s)	101, 1158
BmtI	GCTAGC	1 cut(s)	594
BmuI	ACTGGG	1 cut(s)	1190
BoxI	GACNNNNGTC	1 cut(s)	371
Bpu10I	CCTNAGC	1 cut(s)	1186
BpuEI	CTTGAG	2 cut(s)	404, 904
BsaI	GGTCTC	2 cut(s)	539, 1083
BsaJI	CCNNGG	2 cut(s)	151, 1004
Bsc4I	CCNNNNNNNGG	2 cut(s)	693, 1099
Bse1I	ACTGG	2 cut(s)	1093, 1185
Bse3DI	GCAATG	2 cut(s)	589, 601
BseDI	CCNNGG	2 cut(s)	151, 1004
BseGI	GGATG	2 cut(s)	737, 961
BseLI	CCNNNNNNNGG	2 cut(s)	693, 1099
BseMI	GCAATG	2 cut(s)	589, 601
BseMII	CTCAG	2 cut(s)	493, 599
BseNI	ACTGG	2 cut(s)	1093, 1185
BseRI	GAGGAG	2 cut(s)	249, 905
BseSI	GKGCMC	3 cut(s)	243, 652, 799
BseXI	GCAGC	3 cut(s)	453, 574, 952
Bsh1236I	CGCG	1 cut(s)	678
BshFI	GGCC	1 cut(s)	484
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	252
BslFI	GGGAC	3 cut(s)	184, 359, 852
BslI	CCNNNNNNNGG	2 cut(s)	693, 1099
BsmAI	GTCTC	3 cut(s)	319, 539, 1083
BsmFI	GGGAC	3 cut(s)	184, 359, 852
BsnI	GGCC	1 cut(s)	484
Bso31I	GGTCTC	2 cut(s)	539, 1083
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	3 cut(s)	243, 652, 799
Bsp143I	GATC	5 cut(s)	107, 128, 611, 785, 996
BspACI	CCGC	4 cut(s)	438, 676, 966, 1175
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	2 cut(s)	492, 600
BspFNI	CGCG	1 cut(s)	678
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	1 cut(s)	397
BspOI	GCTAGC	1 cut(s)	594
BspPI	GGATC	3 cut(s)	136, 793, 1004
BspTNI	GGTCTC	2 cut(s)	539, 1083
BsrDI	GCAATG	2 cut(s)	589, 601
BsrI	ACTGG	2 cut(s)	1093, 1185
BssECI	CCNNGG	2 cut(s)	151, 1004
BssMI	GATC	5 cut(s)	107, 128, 611, 785, 996
BssT1I	CCWWGG	2 cut(s)	151, 1004
Bst4CI	ACNGT	2 cut(s)	169, 849
Bst6I	CTCTTC	2 cut(s)	542, 1081
BstC8I	GCNNGC	2 cut(s)	592, 945
BstDEI	CTNAG	5 cut(s)	349, 479, 578, 608, 1186
BstF5I	GGATG	2 cut(s)	737, 961
BstFNI	CGCG	1 cut(s)	678
BstKTI	GATC	5 cut(s)	110, 131, 614, 788, 999
BstMAI	GTCTC	3 cut(s)	319, 539, 1083
BstMBI	GATC	5 cut(s)	107, 128, 611, 785, 996
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 953
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSFI	CTRYAG	2 cut(s)	46, 460
BstSLI	GKGCMC	3 cut(s)	243, 652, 799
BstUI	CGCG	1 cut(s)	678
BstV1I	GCAGC	3 cut(s)	453, 574, 952
BstX2I	RGATCY	1 cut(s)	128
BstXI	CCANNNNNNTGG	1 cut(s)	910
BstYI	RGATCY	1 cut(s)	128
BsuI	GTATCC	2 cut(s)	552, 682
BsuRI	GGCC	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	737, 961
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	4 cut(s)	78, 307, 414, 681
Cac8I	GCNNGC	2 cut(s)	592, 945
CaiI	CAGNNNCTG	1 cut(s)	416
CciI	TCATGA	1 cut(s)	540
Csp6I	GTAC	2 cut(s)	845, 1133
CspCI	CAANNNNNGTGG	2 cut(s)	730, 765
CviAII	CATG	4 cut(s)	189, 311, 541, 1075
CviQI	GTAC	2 cut(s)	845, 1133
DdeI	CTNAG	5 cut(s)	349, 479, 578, 608, 1186
DpnI	GATC	5 cut(s)	109, 130, 613, 787, 998
DpnII	GATC	5 cut(s)	107, 128, 611, 785, 996
DraIII	CACNNNGTG	1 cut(s)	645
Eam1104I	CTCTTC	2 cut(s)	542, 1081
EarI	CTCTTC	2 cut(s)	542, 1081
Eco130I	CCWWGG	2 cut(s)	151, 1004
Eco147I	AGGCCT	1 cut(s)	484
Eco31I	GGTCTC	2 cut(s)	539, 1083
Eco57I	CTGAAG	2 cut(s)	54, 855
Eco88I	CYCGRG	1 cut(s)	252
EcoRI	GAATTC	2 cut(s)	547, 1023
EcoT14I	CCWWGG	2 cut(s)	151, 1004
ErhI	CCWWGG	2 cut(s)	151, 1004
FaeI	CATG	4 cut(s)	192, 314, 544, 1078
FaqI	GGGAC	3 cut(s)	184, 359, 852
FatI	CATG	4 cut(s)	188, 310, 540, 1074
FauI	CCCGC	2 cut(s)	683, 973
Fnu4HI	GCNGC	4 cut(s)	439, 442, 588, 941
FokI	GGATG	2 cut(s)	724, 948
Fsp4HI	GCNGC	4 cut(s)	439, 442, 588, 941
FspBI	CTAG	3 cut(s)	591, 1005, 1172
GluI	GCNGC	4 cut(s)	439, 442, 588, 941
HaeIII	GGCC	1 cut(s)	484
Hin1II	CATG	4 cut(s)	192, 314, 544, 1078
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	5 cut(s)	65, 266, 297, 629, 865
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	2 cut(s)	241, 1114
Hpy188I	TCNGA	5 cut(s)	285, 503, 558, 609, 1085
Hpy188III	TCNNGA	4 cut(s)	252, 541, 883, 1124
Hpy8I	GTNNAC	2 cut(s)	241, 1114
HpyAV	CCTTC	6 cut(s)	353, 703, 744, 1030, 1045, 1199
HpyCH4III	ACNGT	2 cut(s)	169, 849
HpyCH4IV	ACGT	1 cut(s)	872
HpyCH4V	TGCA	4 cut(s)	28, 134, 241, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 953
HpyF3I	CTNAG	5 cut(s)	349, 479, 578, 608, 1186
HpySE526I	ACGT	1 cut(s)	872
Hsp92II	CATG	4 cut(s)	192, 314, 544, 1078
Kzo9I	GATC	5 cut(s)	107, 128, 611, 785, 996
Lsp1109I	GCAGC	3 cut(s)	453, 574, 952
LweI	GCATC	2 cut(s)	101, 1158
MaeI	CTAG	3 cut(s)	591, 1005, 1172
MaeII	ACGT	1 cut(s)	872
MaeIII	GTNAC	3 cut(s)	73, 488, 518
MalI	GATC	5 cut(s)	109, 130, 613, 787, 998
MboI	GATC	5 cut(s)	107, 128, 611, 785, 996
MboII	GAAGA	4 cut(s)	60, 529, 848, 1098
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	3 cut(s)	243, 652, 799
MluCI	AATT	8 cut(s)	29, 321, 405, 547, 908, 1023, 1139, 1164
MlyI	GAGTC	2 cut(s)	260, 874
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	8 cut(s)	227, 476, 537, 643, 662, 883, 1120, 1189
MseI	TTAA	4 cut(s)	276, 327, 906, 1043
MslI	CAYNNNNRTG	2 cut(s)	719, 875
MspA1I	CMGCKG	1 cut(s)	968
MvnI	CGCG	1 cut(s)	678
MwoI	GCNNNNNNNGC	2 cut(s)	238, 953
NdeII	GATC	5 cut(s)	107, 128, 611, 785, 996
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	4 cut(s)	192, 314, 544, 1078
NlaIV	GGNNCC	1 cut(s)	397
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	2 cut(s)	73, 518
PagI	TCATGA	1 cut(s)	540
PceI	AGGCCT	1 cut(s)	484
PfeI	GAWTC	3 cut(s)	65, 297, 629
PflFI	GACNNNGTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	1099
PkrI	GCNGC	4 cut(s)	440, 443, 589, 942
PleI	GAGTC	2 cut(s)	260, 873
PpsI	GAGTC	2 cut(s)	260, 873
PshAI	GACNNNNGTC	1 cut(s)	371
PsiI	TTATAA	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	128
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	2 cut(s)	846, 1134
RsaNI	GTAC	2 cut(s)	845, 1133
RseI	CAYNNNNRTG	2 cut(s)	719, 875
SaqAI	TTAA	4 cut(s)	276, 327, 906, 1043
SatI	GCNGC	4 cut(s)	439, 442, 588, 941
Sau3AI	GATC	5 cut(s)	107, 128, 611, 785, 996
SchI	GAGTC	2 cut(s)	260, 874
SduI	GDGCHC	3 cut(s)	243, 652, 799
SfaNI	GCATC	2 cut(s)	101, 1158
SfcI	CTRYAG	2 cut(s)	46, 460
SmiMI	CAYNNNNRTG	2 cut(s)	719, 875
SmlI	CTYRAG	2 cut(s)	383, 883
SmoI	CTYRAG	2 cut(s)	383, 883
Sse9I	AATT	8 cut(s)	29, 321, 405, 547, 908, 1023, 1139, 1164
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	4 cut(s)	438, 676, 966, 1175
SspI	AATATT	1 cut(s)	1061
SspMI	CTAG	3 cut(s)	591, 1005, 1172
StuI	AGGCCT	1 cut(s)	484
StyI	CCWWGG	2 cut(s)	151, 1004
TaaI	ACNGT	2 cut(s)	169, 849
TaiI	ACGT	1 cut(s)	875
TaqI	TCGA	1 cut(s)	468
TaqII	GACCGA	1 cut(s)	259
TasI	AATT	8 cut(s)	29, 321, 405, 547, 908, 1023, 1139, 1164
TatI	WGTACW	1 cut(s)	844
TauI	GCSGC	1 cut(s)	441
TfiI	GAWTC	3 cut(s)	65, 297, 629
Tru1I	TTAA	4 cut(s)	276, 327, 906, 1043
Tru9I	TTAA	4 cut(s)	276, 327, 906, 1043
TscAI	CASTG	4 cut(s)	78, 307, 421, 688
TseFI	GTSAC	2 cut(s)	73, 518
TseI	GCWGC	3 cut(s)	441, 587, 940
Tsp45I	GTSAC	2 cut(s)	73, 518
TspDTI	ATGAA	5 cut(s)	105, 162, 529, 726, 794
TspRI	CASTG	4 cut(s)	78, 307, 421, 688
Tth111I	GACNNNGTC	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	1099
VneI	GTGCAC	1 cut(s)	239
XapI	RAATTY	2 cut(s)	547, 1023
XmaJI	CCTAGG	1 cut(s)	1004
XspI	CTAG	3 cut(s)	591, 1005, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.