Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003237

Physical Location & Seq

Genomic Coordinates Reverse (-)

22312374 .. 22313387

Gene Structure 1014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0239000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGTGAGGAGACATCTGATGCAATCAACCTTGACCTGAATCTGGGTCCTGGTCCCGAGCCGGCTTCTGCCACCATGTCGAATGAGCCTGTGAATTTGGAGAATTGGATTGACCAGCAGCCTATGCACCAAATTCCGGAAGTTTTTGGGATTAGTCCGTTTCGACGGAGATGGCCGCAACCTGAAGCGCATAATGTTTGGTCAGAGTTGAATCAATTGATGGTCGATTCTGGTACATCGAGTATACTACAAGCAGGGGAGGGTAGTGTTGCTGCGGAGGAAAGAAGCAACGATGTGCCTAAAAAGTGTGAAAATATCAATGGGATCTTAGAAAATGAGACTACAGAAGAGAAGGATGATGTTGAAAAGAGCAGTGGCAATGATGGTAGCTTTGAAAGCTTGAGGCAAACTATTCAGAGGAATGCATTTACTTTTCCGGTGGAGGAGATGATTCAACGCCTTGGAAGCAGATTTGATTTGTCTCGGGATTTGGTTCAGCCAACAGAAGATACTCCCCGGGAAACTGCAGCAGAAAGAACAAATGGCTTGTTAAATAGGATTCTAACATCTCGAGCACTGCGCAGAGAGCAAATTCAGTTGGCACAAACTGAAATTGTAGATTTAACGCAAGACAACATTACTAGCCTTGATACAGGAGATAACCGCCGGCTTCAGTCCATGCTACTTCGAAGAACACAATCACATAGAGCAACACTTTCTTCTCTGTCATCTGCATTGAGTTCTGCTGAAAGGTTGGTGGAGGCATATTTCCATAACCATCCTATTACACCTGCAGTTAGAAATCAAGAGCCGCCTCCACCAGTTGATGACAGAGACTCTTTCTCGAGTATTCAAGCTGTTATAAATTCAGAGAGTCAAATGGACACAGCTGTGGAAATCGATTCAATGGTTTCCCTTTCAACTTCATCTTCCAGAAGAAGAAATGAAGCTTCAAGGGTTTCAGACATGGACAGTGGAGACTCCCGTGCCCCAAGAAGGAGAAGACTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00906 ko01062 ko01100 ko01110 map00906 map01062 map01100 map01110

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

337

Amino Acids

37.7

Weight (kDa)

4.79

Isoelectric Point (pI)

75.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17230 AT5G17230 AT5G17230 AT5G17230
fragaria_vesca	FvH4_1g27480 FvH4_6g38780
malus_domestica	MD09G1146800.v1.1 MD09G1281300.v1.1 MD17G1133400.v1.1
prunus_persica	Prupe.3G013200_v2.0.a1 Prupe.3G013200_v2.0.a1 Prupe.3G178500_v2.0.a1
pyrus_communis	pycom09g06720 pycom09g18890 pycom17g12790
rosa_chinensis	RchiOBHm_Chr2g0152351 RchiOBHm_Chr3g0488531
rosa_laevigata	RLG00000020629 RLG00000022946
rosa_multiflora	Rmu_sc0005885.1_g000002 Rmu_sc0019526.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095770 Rroxscaffold_6G00394200
rosa_rugosa	Rorug02G0432500 Rorug03G0238700 Rorug03G0238800 Rorug03G0238900 Rorug03G0239000
rosa_samantha	Rh2AG494000 Rh2BG506300 Rh2CG480300 Rh2DG517400 Rh3AG287700 Rh3CG321800 Rh3DG320600
rosa_wichuraiana	Rw2G040650 Rw3G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	863
AarI	CACCTGC	1 cut(s)	799
Acc16I	TGCGCA	1 cut(s)	581
Acc36I	ACCTGC	1 cut(s)	799
AccI	GTMKAC	1 cut(s)	244
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	4 cut(s)	176, 275, 664, 812
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	4 cut(s)	94, 132, 591, 865
AcuI	CTGAAG	2 cut(s)	204, 656
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	3 cut(s)	43, 136, 996
AgsI	TTSAA	8 cut(s)	211, 365, 395, 455, 854, 906, 921, 954
AjnI	CCWGG	1 cut(s)	49
AleI	CACNNNNGTG	1 cut(s)	890
AluBI	AGCT	5 cut(s)	390, 399, 857, 890, 950
AluI	AGCT	5 cut(s)	390, 399, 857, 890, 950
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	5 cut(s)	5, 332, 486, 828, 972
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	5 cut(s)	56, 483, 516, 570, 844
Aor13HI	TCCGGA	1 cut(s)	136
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	118, 272, 527
ApoI	RAATTY	4 cut(s)	94, 132, 591, 865
AspLEI	GCGC	2 cut(s)	190, 582
AspS9I	GGNCC	2 cut(s)	47, 53
AsuC2I	CCSGG	2 cut(s)	517, 518
AsuHPI	GGTGA	1 cut(s)	17
AsuII	TTCGAA	1 cut(s)	688
AvaI	CYCGRG	5 cut(s)	56, 483, 516, 570, 844
AvaII	GGWCC	2 cut(s)	47, 53
BaeGI	GKGCMC	1 cut(s)	991
BbsI	GAAGAC	1 cut(s)	1009
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	3 cut(s)	130, 259, 539
BccI	CCATC	4 cut(s)	165, 214, 377, 786
BciT130I	CCWGG	1 cut(s)	51
BcnI	CCSGG	2 cut(s)	517, 518
BcoDI	GTCTC	5 cut(s)	5, 332, 486, 828, 972
BfaI	CTAG	1 cut(s)	642
BfmI	CTRYAG	3 cut(s)	342, 525, 792
BfuAI	ACCTGC	1 cut(s)	799
BisI	GCNGC	5 cut(s)	119, 176, 273, 528, 812
BlsI	GCNGC	5 cut(s)	120, 177, 274, 529, 813
Bme1390I	CCNGG	3 cut(s)	51, 517, 518
Bme18I	GGWCC	2 cut(s)	47, 53
BmeT110I	CYCGRG	5 cut(s)	56, 483, 516, 570, 844
BmgT120I	GGNCC	2 cut(s)	47, 53
BmiI	GGNNCC	2 cut(s)	48, 55
BmrFI	CCNGG	3 cut(s)	51, 517, 518
BmsI	GCATC	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	1009
Bpu14I	TTCGAA	1 cut(s)	688
BpuEI	CTTGAG	1 cut(s)	421
BpuMI	CCSGG	2 cut(s)	517, 518
Bsa29I	ATCGAT	1 cut(s)	900
BsaJI	CCNNGG	3 cut(s)	460, 515, 516
BsaWI	WCCGGW	2 cut(s)	136, 436
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 136, 996
Bse118I	RCCGGY	2 cut(s)	61, 666
Bse1I	ACTGG	1 cut(s)	821
Bse3DI	GCAATG	1 cut(s)	385
BseAI	TCCGGA	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	900
BseDI	CCNNGG	3 cut(s)	460, 515, 516
BseGI	GGATG	2 cut(s)	361, 778
BseLI	CCNNNNNNNGG	3 cut(s)	43, 136, 996
BseMI	GCAATG	1 cut(s)	385
BseNI	ACTGG	1 cut(s)	821
BseRI	GAGGAG	2 cut(s)	23, 458
BseSI	GKGCMC	1 cut(s)	991
BseXI	GCAGC	3 cut(s)	130, 259, 539
BshFI	GGCC	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	900
BsiHKAI	GWGCWC	1 cut(s)	577
BsiHKCI	CYCGRG	5 cut(s)	56, 483, 516, 570, 844
BsiSI	CCGG	5 cut(s)	62, 137, 437, 517, 667
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	43, 136, 996
BsmAI	GTCTC	5 cut(s)	5, 332, 486, 828, 972
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	175
BsoBI	CYCGRG	5 cut(s)	56, 483, 516, 570, 844
Bsp119I	TTCGAA	1 cut(s)	688
Bsp1286I	GDGCHC	2 cut(s)	577, 991
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	324
BspACI	CCGC	4 cut(s)	176, 275, 664, 812
BspANI	GGCC	1 cut(s)	175
BspDI	ATCGAT	1 cut(s)	900
BspEI	TCCGGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	48, 55
BspMAI	CTGCAG	2 cut(s)	529, 796
BspMI	ACCTGC	1 cut(s)	799
BspPI	GGATC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	688
BsrDI	GCAATG	1 cut(s)	385
BsrFI	RCCGGY	2 cut(s)	61, 666
BsrI	ACTGG	1 cut(s)	821
BssAI	RCCGGY	2 cut(s)	61, 666
BssECI	CCNNGG	3 cut(s)	460, 515, 516
BssMI	GATC	1 cut(s)	324
BssNAI	GTATAC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	460
Bst1107I	GTATAC	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	974
Bst6I	CTCTTC	1 cut(s)	342
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstBI	TTCGAA	1 cut(s)	688
BstC8I	GCNNGC	2 cut(s)	63, 668
BstDEI	CTNAG	1 cut(s)	328
BstF5I	GGATG	2 cut(s)	361, 778
BstHHI	GCGC	2 cut(s)	190, 582
BstKTI	GATC	1 cut(s)	327
BstMAI	GTCTC	5 cut(s)	5, 332, 486, 828, 972
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 396, 465, 586
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	49, 515, 516
BstSFI	CTRYAG	3 cut(s)	342, 525, 792
BstSLI	GKGCMC	1 cut(s)	991
BstV1I	GCAGC	3 cut(s)	130, 259, 539
BstV2I	GAAGAC	1 cut(s)	1009
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BstZ17I	GTATAC	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	900
BsuRI	GGCC	1 cut(s)	175
BsuTUI	ATCGAT	1 cut(s)	900
BtsCI	GGATG	2 cut(s)	361, 778
BtsI	GCAGTG	2 cut(s)	379, 575
BtsIMutI	CAGTG	3 cut(s)	379, 575, 979
BveI	ACCTGC	1 cut(s)	799
Cac8I	GCNNGC	2 cut(s)	63, 668
CfoI	GCGC	2 cut(s)	190, 582
Cfr10I	RCCGGY	2 cut(s)	61, 666
Cfr13I	GGNCC	2 cut(s)	47, 53
Cfr9I	CCCGGG	1 cut(s)	516
ClaI	ATCGAT	1 cut(s)	900
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	3 cut(s)	76, 679, 967
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	1 cut(s)	328
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	47, 53
Eco57I	CTGAAG	2 cut(s)	204, 656
Eco88I	CYCGRG	5 cut(s)	56, 483, 516, 570, 844
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	460
EcoT22I	ATGCAT	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	3 cut(s)	79, 682, 970
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	3 cut(s)	75, 678, 966
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	5 cut(s)	119, 176, 273, 528, 812
FokI	GGATG	2 cut(s)	368, 765
Fsp4HI	GCNGC	5 cut(s)	119, 176, 273, 528, 812
FspBI	CTAG	1 cut(s)	642
FspI	TGCGCA	1 cut(s)	581
GlaI	GCGC	2 cut(s)	189, 581
GluI	GCNGC	5 cut(s)	119, 176, 273, 528, 812
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	5 cut(s)	62, 137, 437, 517, 667
HhaI	GCGC	2 cut(s)	190, 582
Hin1II	CATG	3 cut(s)	79, 682, 970
Hin6I	GCGC	2 cut(s)	188, 580
HinP1I	GCGC	2 cut(s)	188, 580
HindIII	AAGCTT	2 cut(s)	397, 948
HinfI	GANTC	9 cut(s)	40, 211, 227, 451, 559, 836, 874, 902, 980
HpaII	CCGG	5 cut(s)	62, 137, 437, 517, 667
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	5 cut(s)	19, 205, 417, 871, 964
Hpy188III	TCNNGA	7 cut(s)	56, 137, 485, 570, 806, 844, 933
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	2 cut(s)	346, 990
HpyCH4III	ACNGT	1 cut(s)	974
HpyCH4V	TGCA	6 cut(s)	23, 127, 425, 527, 734, 794
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 396, 465, 586
HpyF3I	CTNAG	1 cut(s)	328
Hsp92II	CATG	3 cut(s)	79, 682, 970
HspAI	GCGC	2 cut(s)	188, 580
Kpn2I	TCCGGA	1 cut(s)	136
KroI	GCCGGC	2 cut(s)	61, 666
KroNI	GCCGGC	2 cut(s)	63, 668
Kzo9I	GATC	1 cut(s)	324
Lsp1109I	GCAGC	3 cut(s)	130, 259, 539
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	642
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MboII	GAAGA	8 cut(s)	359, 518, 702, 711, 921, 948, 951, 1014
MfeI	CAATTG	1 cut(s)	215
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	2 cut(s)	577, 991
MluCI	AATT	7 cut(s)	94, 103, 132, 215, 591, 612, 865
MlyI	GAGTC	3 cut(s)	830, 883, 974
MnlI	CCTC	7 cut(s)	253, 271, 396, 411, 436, 754, 825
Mph1103I	ATGCAT	1 cut(s)	427
MroI	TCCGGA	1 cut(s)	136
MroNI	GCCGGC	2 cut(s)	61, 666
MseI	TTAA	2 cut(s)	551, 623
MslI	CAYNNNNRTG	1 cut(s)	890
MspA1I	CMGCKG	1 cut(s)	890
MspI	CCGG	5 cut(s)	62, 137, 437, 517, 667
MspR9I	CCNGG	3 cut(s)	51, 517, 518
MunI	CAATTG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	4 cut(s)	124, 396, 465, 586
NaeI	GCCGGC	2 cut(s)	63, 668
NciI	CCSGG	2 cut(s)	517, 518
NdeII	GATC	1 cut(s)	324
NgoMIV	GCCGGC	2 cut(s)	61, 666
NlaIII	CATG	3 cut(s)	79, 682, 970
NlaIV	GGNNCC	2 cut(s)	48, 55
NsbI	TGCGCA	1 cut(s)	581
NsiI	ATGCAT	1 cut(s)	427
NspV	TTCGAA	1 cut(s)	688
OliI	CACNNNNGTG	1 cut(s)	890
PaeR7I	CTCGAG	2 cut(s)	570, 844
PaqCI	CACCTGC	1 cut(s)	799
PctI	GAATGC	1 cut(s)	427
PdiI	GCCGGC	2 cut(s)	63, 668
PfeI	GAWTC	6 cut(s)	40, 211, 227, 451, 559, 902
PkrI	GCNGC	5 cut(s)	120, 177, 274, 529, 813
PleI	GAGTC	3 cut(s)	830, 882, 974
PpsI	GAGTC	3 cut(s)	830, 882, 974
PpuMI	RGGWCCY	1 cut(s)	47
PsiI	TTATAA	1 cut(s)	863
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	48, 55
PspPI	GGNCC	2 cut(s)	47, 53
PspPPI	RGGWCCY	1 cut(s)	47
PstI	CTGCAG	2 cut(s)	529, 796
PsuI	RGATCY	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	890
SaqAI	TTAA	2 cut(s)	551, 623
SatI	GCNGC	5 cut(s)	119, 176, 273, 528, 812
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	2 cut(s)	47, 53
SchI	GAGTC	3 cut(s)	830, 883, 974
ScrFI	CCNGG	3 cut(s)	51, 517, 518
SduI	GDGCHC	2 cut(s)	577, 991
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	3 cut(s)	342, 525, 792
Sfr274I	CTCGAG	2 cut(s)	570, 844
SfuI	TTCGAA	1 cut(s)	688
SinI	GGWCC	2 cut(s)	47, 53
SlaI	CTCGAG	2 cut(s)	570, 844
SmaI	CCCGGG	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	890
SmlI	CTYRAG	3 cut(s)	400, 570, 844
SmoI	CTYRAG	3 cut(s)	400, 570, 844
Sse9I	AATT	7 cut(s)	94, 103, 132, 215, 591, 612, 865
SsiI	CCGC	4 cut(s)	176, 275, 664, 812
SspMI	CTAG	1 cut(s)	642
StyD4I	CCNGG	3 cut(s)	49, 515, 516
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	974
TaqI	TCGA	8 cut(s)	80, 163, 225, 239, 571, 688, 845, 900
TasI	AATT	7 cut(s)	94, 103, 132, 215, 591, 612, 865
TauI	GCSGC	2 cut(s)	178, 814
TfiI	GAWTC	6 cut(s)	40, 211, 227, 451, 559, 902
Tru1I	TTAA	2 cut(s)	551, 623
Tru9I	TTAA	2 cut(s)	551, 623
TscAI	CASTG	3 cut(s)	379, 582, 979
TseI	GCWGC	3 cut(s)	118, 272, 527
TspDTI	ATGAA	2 cut(s)	915, 960
TspGWI	ACGGA	2 cut(s)	147, 181
TspMI	CCCGGG	1 cut(s)	516
TspRI	CASTG	3 cut(s)	379, 582, 979
VpaK11BI	GGWCC	2 cut(s)	47, 53
XapI	RAATTY	4 cut(s)	94, 132, 591, 865
XhoI	CTCGAG	2 cut(s)	570, 844
XmaI	CCCGGG	1 cut(s)	516
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	1 cut(s)	642
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.