Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003237

Physical Location & Seq

Genomic Coordinates Forward (+)

22286287 .. 22289328

Gene Structure 3042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0238900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCGGGGTCCCCATCGCTCTGAGCGCAAGACTCAAAGCCATCTACAGCGAAGCCCTACTTCCCCAATCGCAATGAAAGAGGATTCCAAATCTACCGAAGCTAAATTTATGGCCTCCATTCTCTTGAAGAAGCAAAAGCAGAAGCAGAAAACCACCAAGCTCGGAAGCTCCAGAACCCACATCAACAACCTCCCCAAGCTCCTCTCCTACGTCACCCTAACCTCACCGCCTTACACTTGGCTCTGGTCCAAGTTTGACGACCTTGTCGAGTCCCTCATCCAGCTCCTTCTTTTGCCGGAATCCGATGAAACTCTCAAGGAGGTGGTGTTGGATACACTGATGGAGTTTTTGAAGTTGGGAAACGGAAGAAGGTTTCACTCTGCTATATTCCTTAGGTTTCTTCGTAACATTGAGCTGGCTCAGAAGTCTTTCAATGCGACCTCGGAATTAAAGCAGTATACCACTTTAAGAGTGGAAGTTGGGAATGCAAGATTTGAATTGCTGGATAGGATGAAAGAAGAGAGCAAGGAAACAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCGTTGAATTTTTCCACAAGCTTCCTCAGGATATTGAAAAGGGGGGAAATCCGACACACTCACTTTTCGACAGATATAACGATTCCTACCTCCGGCGGGTTGGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00906 ko01062 ko01100 ko01110 map00906 map01062 map01100 map01110

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

226

Amino Acids

26.29

Weight (kDa)

9.48

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17230 AT5G17230 AT5G17230 AT5G17230
fragaria_vesca	FvH4_1g27480 FvH4_6g38780
malus_domestica	MD09G1146800.v1.1 MD09G1281300.v1.1 MD17G1133400.v1.1
prunus_persica	Prupe.3G013200_v2.0.a1 Prupe.3G013200_v2.0.a1 Prupe.3G178500_v2.0.a1
pyrus_communis	pycom09g06720 pycom09g18890 pycom17g12790
rosa_chinensis	RchiOBHm_Chr2g0152351 RchiOBHm_Chr3g0488531
rosa_laevigata	RLG00000020629 RLG00000022946
rosa_multiflora	Rmu_sc0005885.1_g000002 Rmu_sc0019526.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095770 Rroxscaffold_6G00394200
rosa_rugosa	Rorug02G0432500 Rorug03G0238700 Rorug03G0238800 Rorug03G0238900 Rorug03G0239000
rosa_samantha	Rh2AG494000 Rh2BG506300 Rh2CG480300 Rh2DG517400 Rh3AG287700 Rh3CG321800 Rh3DG320600
rosa_wichuraiana	Rw2G040650 Rw3G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	458
AciI	CCGC	3 cut(s)	4, 227, 667
AcsI	RAATTY	2 cut(s)	104, 578
AfiI	CCNNNNNNNGG	2 cut(s)	663, 667
AgsI	TTSAA	6 cut(s)	127, 352, 433, 497, 578, 608
AluBI	AGCT	8 cut(s)	101, 160, 168, 199, 283, 415, 544, 592
AluI	AGCT	8 cut(s)	101, 160, 168, 199, 283, 415, 544, 592
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	541
ApoI	RAATTY	2 cut(s)	104, 578
Asp700I	GAANNNNTTC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	8, 246
AsuHPI	GGTGA	3 cut(s)	205, 216, 562
AvaII	GGWCC	2 cut(s)	8, 246
AxyI	CCTNAGG	2 cut(s)	392, 597
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	3 cut(s)	21, 48, 334
BciVI	GTATCC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	543
Bme18I	GGWCC	2 cut(s)	8, 246
BmgT120I	GGNCC	2 cut(s)	8, 246
BmiI	GGNNCC	2 cut(s)	9, 10
BpmI	CTGGAG	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	663, 667
Bse21I	CCTNAGG	2 cut(s)	392, 597
Bse3DI	GCAATG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	2 cut(s)	276, 516
BseLI	CCNNNNNNNGG	2 cut(s)	663, 667
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	3 cut(s)	12, 434, 611
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	553
BshFI	GGCC	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	296, 664
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	663, 667
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	1 cut(s)	113
BspACI	CCGC	3 cut(s)	4, 227, 667
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	3 cut(s)	13, 433, 610
BspLI	GGNNCC	2 cut(s)	9, 10
BsrDI	GCAATG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	441
BssNAI	GTATAC	1 cut(s)	459
Bst1107I	GTATAC	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	1 cut(s)	513
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	4 cut(s)	21, 392, 420, 597
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	2 cut(s)	276, 516
BstHHI	GCGC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	563
BstSFI	CTRYAG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	553
BstZ17I	GTATAC	1 cut(s)	459
Bsu36I	CCTNAGG	2 cut(s)	392, 597
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	276, 516
BtsIMutI	CAGTG	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	417
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	8, 246
DdeI	CTNAG	4 cut(s)	21, 392, 420, 597
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco47I	GGWCC	2 cut(s)	8, 246
Eco81I	CCTNAGG	2 cut(s)	392, 597
Eco91I	GGTNACC	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	563
FaiI	YATR	6 cut(s)	110, 386, 459, 539, 554, 648
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FaqI	GGGAC	1 cut(s)	256
FauI	CCCGC	1 cut(s)	660
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	1 cut(s)	542
FokI	GGATG	2 cut(s)	263, 523
Fsp4HI	GCNGC	1 cut(s)	542
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	542
GsuI	CTGGAG	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	2 cut(s)	296, 664
HhaI	GCGC	1 cut(s)	27
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	5 cut(s)	31, 83, 269, 299, 653
HpaII	CCGG	2 cut(s)	296, 664
HphI	GGTGA	3 cut(s)	205, 216, 562
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	6 cut(s)	22, 164, 304, 423, 445, 624
Hpy188III	TCNNGA	3 cut(s)	124, 171, 599
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	2 cut(s)	296, 363
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	488, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	4 cut(s)	21, 392, 420, 597
HpySE526I	ACGT	1 cut(s)	210
HspAI	GCGC	1 cut(s)	25
KflI	GGGWCCC	1 cut(s)	8
LmnI	GCTCC	3 cut(s)	173, 204, 288
LpnPI	CCDG	8 cut(s)	184, 229, 293, 309, 401, 488, 584, 677
Lsp1109I	GCAGC	1 cut(s)	553
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	3 cut(s)	211, 404, 563
MboII	GAAGA	4 cut(s)	139, 378, 392, 530
MluCI	AATT	4 cut(s)	104, 446, 497, 578
MlyI	GAGTC	2 cut(s)	25, 278
MmeI	TCCRAC	2 cut(s)	309, 647
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	2 cut(s)	449, 467
MspI	CCGG	2 cut(s)	296, 664
Mva1269I	GAATGC	1 cut(s)	490
MwoI	GCNNNNNNNGC	1 cut(s)	24
NlaIV	GGNNCC	2 cut(s)	9, 10
NmuCI	GTSAC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PctI	GAATGC	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	3 cut(s)	83, 299, 653
PflFI	GACNNNGTC	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	543
PleI	GAGTC	2 cut(s)	25, 277
PpsI	GAGTC	2 cut(s)	25, 277
PpuMI	RGGWCCY	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	8
PspEI	GGTNACC	1 cut(s)	563
PspN4I	GGNNCC	2 cut(s)	9, 10
PspPI	GGNCC	2 cut(s)	8, 246
PspPPI	RGGWCCY	1 cut(s)	8
PsyI	GACNNNGTC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	449, 467
SatI	GCNGC	1 cut(s)	542
Sau96I	GGNCC	2 cut(s)	8, 246
SchI	GAGTC	2 cut(s)	25, 278
SfcI	CTRYAG	1 cut(s)	44
SinI	GGWCC	2 cut(s)	8, 246
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	4 cut(s)	104, 446, 497, 578
SsiI	CCGC	3 cut(s)	4, 227, 667
SspMI	CTAG	1 cut(s)	545
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	2 cut(s)	267, 639
TasI	AATT	4 cut(s)	104, 446, 497, 578
TfiI	GAWTC	3 cut(s)	83, 299, 653
Tru1I	TTAA	2 cut(s)	449, 467
Tru9I	TTAA	2 cut(s)	449, 467
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	541
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	89, 321, 527
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	1 cut(s)	342
Tth111I	GACNNNGTC	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	8, 246
XapI	RAATTY	2 cut(s)	104, 578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.