Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003237

Physical Location & Seq

Genomic Coordinates Reverse (-)

10507489 .. 10510296

Gene Structure 2808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g12790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTCAGGTCTTCTTCTCTGGGTGGTGAGTCCCAAAGAGAATGCCAGCTCTCTGCTGGGTCTGTTGCCGAGAATTTGCACCCCAAGGAGGTCTAAATTGTGCTCAAAGCTGGGTTTTTCAAGTGGGGTTTTGGCCTACTCGGGTGCGGTTGCAAATCCAGCCAGATCTTCAGAGGAGAAGGTGTATGAAGTGGTGCTGAAGCAGGCTGCTCTAATGAGAGAACCGAACACGGTAAAAAAGAAATCTTTGGATTTGGATGAACGGATTACTGAAGGTTTGAACAACTGGGATTTACTGAATAAGGCGTATGACCGGTGTGGTGAGGTCTGTGCGGAATATGCCAAGACTTTTTACCTAGGGACATTGCTCATGACACCGGAGCGGCGACGAGCTGTTTGGGCAATCTATGTGTGGTGCAGAAGGACAGATGAGCTAGTGGATGGACCTAATGCTTCATACATTACACCCAAAGCTCTTGACCGATGGGAGAAAAGACTGACAGATCGATCCCACAGCCGGCCTTACGATATGTATGATGCTGCTCTATCTGATACAGTCGCCAAGTACCCTGTTGACATTCAGCCCTTCAAAGACATGGTAGAAGGAATGAGATTAGACTTGAGAAAATCAAGATACCAGAACTTTGATGAACTTTACCTTTACTGCTACTATGTTGCTGGAACTGTTGGATTGATGAGTGTTCCGGTGATGGGGATATCCCCGGAATCAAAGGCCTCAACAGAGTGCGTTTACAATGCTGCATTGGCCCTTGGAATTGCTAATCAGCTCACTAACATTCTCAGAGATGTTGGAGAAGATGCTAGGAGAGGAAGAGTATATCTCCCACAAGATGAGCTTGCCCAAGCCGGCCTATCAGACGATGACATCTTTCGTGGGAAGGTGACTGACAAGTGGCAAAGTTTCATGAAGGGACAAATAAAGAGAGCTAGAATGTTCTTTGATGAGGCTGAGAAGGGTGTCTCAGAGCTCAACTCAGCTAGTAGATGGCCAGTATGGGCATCTTTGTTGCTGTACAGGCAGATTCTAGATGCAATTGAAGCAAATGGTTATGACAATTTCACAAAAAGGGCATATGTGGGAAAAGCAAAGAAGTTAGCATCATTGCCTGTGGCCTATGGAAGGGCCATTTTAGGACCCTCCAAATTAACTAAGCAGTTGGTGCCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00906 ko01062 ko01100 ko01110 map00906 map01062 map01100 map01110

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

397

Amino Acids

44.67

Weight (kDa)

9.15

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17230 AT5G17230 AT5G17230 AT5G17230
fragaria_vesca	FvH4_1g27480 FvH4_6g38780
malus_domestica	MD09G1146800.v1.1 MD09G1281300.v1.1 MD17G1133400.v1.1
prunus_persica	Prupe.3G013200_v2.0.a1 Prupe.3G013200_v2.0.a1 Prupe.3G178500_v2.0.a1
pyrus_communis	pycom09g06720 pycom09g18890 pycom17g12790
rosa_chinensis	RchiOBHm_Chr2g0152351 RchiOBHm_Chr3g0488531
rosa_laevigata	RLG00000020629 RLG00000022946
rosa_multiflora	Rmu_sc0005885.1_g000002 Rmu_sc0019526.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095770 Rroxscaffold_6G00394200
rosa_rugosa	Rorug02G0432500 Rorug03G0238700 Rorug03G0238800 Rorug03G0238900 Rorug03G0239000
rosa_samantha	Rh2AG494000 Rh2BG506300 Rh2CG480300 Rh2DG517400 Rh3AG287700 Rh3CG321800 Rh3DG320600
rosa_wichuraiana	Rw2G040650 Rw3G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1180
AccBSI	CCGCTC	1 cut(s)	382
AciI	CCGC	3 cut(s)	146, 332, 382
AclWI	GGATC	1 cut(s)	501
AcoI	YGGCCR	1 cut(s)	1007
AcsI	RAATTY	1 cut(s)	72
AcuI	CTGAAG	3 cut(s)	153, 218, 291
AfaI	GTAC	2 cut(s)	566, 1034
AfiI	CCNNNNNNNGG	4 cut(s)	87, 516, 710, 1140
AgeI	ACCGGT	1 cut(s)	312
AgsI	TTSAA	4 cut(s)	120, 280, 589, 1058
Alw21I	GWGCWC	2 cut(s)	104, 990
Alw26I	GTCTC	1 cut(s)	985
AlwI	GGATC	1 cut(s)	501
Ama87I	CYCGRG	1 cut(s)	139
AoxI	GGCC	8 cut(s)	132, 518, 732, 765, 868, 1007, 1131, 1143
ApeKI	GCWGC	3 cut(s)	206, 539, 758
ApoI	RAATTY	1 cut(s)	72
ArsI	GACNNNNNNTTYG	2 cut(s)	378, 410
AsiGI	ACCGGT	1 cut(s)	312
AspA2I	CCTAGG	1 cut(s)	355
AspS9I	GGNCC	4 cut(s)	443, 766, 1143, 1154
AsuC2I	CCSGG	1 cut(s)	722
AsuHPI	GGTGA	4 cut(s)	37, 332, 718, 913
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	443, 1154
AvrII	CCTAGG	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	1009
BanI	GGYRCC	1 cut(s)	1180
BanII	GRGCYC	1 cut(s)	990
BbsI	GAAGAC	1 cut(s)	2
Bbv12I	GWGCWC	2 cut(s)	104, 990
BbvI	GCAGC	3 cut(s)	193, 526, 745
BccI	CCATC	4 cut(s)	434, 477, 703, 999
BcnI	CCSGG	1 cut(s)	722
BcoDI	GTCTC	1 cut(s)	985
BfaI	CTAG	7 cut(s)	356, 434, 822, 948, 999, 1046, 1185
BglII	AGATCT	1 cut(s)	164
BisI	GCNGC	4 cut(s)	207, 383, 540, 759
BlnI	CCTAGG	1 cut(s)	355
BlsI	GCNGC	4 cut(s)	208, 384, 541, 760
Bme1390I	CCNGG	1 cut(s)	722
Bme18I	GGWCC	2 cut(s)	443, 1154
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	4 cut(s)	443, 766, 1143, 1154
BmiI	GGNNCC	2 cut(s)	1156, 1182
BmrFI	CCNGG	1 cut(s)	722
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	5 cut(s)	526, 808, 1028, 1039, 1127
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	2
BplI	GAGNNNNNCTC	4 cut(s)	825, 857, 977, 1009
BpuEI	CTTGAG	1 cut(s)	640
BpuMI	CCSGG	1 cut(s)	722
Bsa29I	ATCGAT	1 cut(s)	505
BsaJI	CCNNGG	4 cut(s)	83, 355, 720, 769
BsaWI	WCCGGW	3 cut(s)	312, 376, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 516, 710, 1140
Bse118I	RCCGGY	3 cut(s)	312, 516, 866
Bse1I	ACTGG	2 cut(s)	290, 1010
Bse3DI	GCAATG	2 cut(s)	362, 1121
BseCI	ATCGAT	1 cut(s)	505
BseDI	CCNNGG	4 cut(s)	83, 355, 720, 769
BseGI	GGATG	2 cut(s)	262, 445
BseLI	CCNNNNNNNGG	4 cut(s)	87, 516, 710, 1140
BseMI	GCAATG	2 cut(s)	362, 1121
BseMII	CTCAG	4 cut(s)	814, 960, 996, 1008
BseNI	ACTGG	2 cut(s)	290, 1010
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	3 cut(s)	193, 526, 745
BseYI	CCCAGC	2 cut(s)	55, 109
BsgI	GTGCAG	1 cut(s)	436
BshFI	GGCC	8 cut(s)	134, 520, 734, 767, 870, 1009, 1133, 1145
BshNI	GGYRCC	1 cut(s)	1180
BshTI	ACCGGT	1 cut(s)	312
BshVI	ATCGAT	1 cut(s)	505
BsiHKAI	GWGCWC	2 cut(s)	104, 990
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	6 cut(s)	313, 377, 517, 704, 722, 867
BslFI	GGGAC	3 cut(s)	15, 373, 945
BslI	CCNNNNNNNGG	4 cut(s)	87, 516, 710, 1140
BsmAI	GTCTC	1 cut(s)	985
BsmFI	GGGAC	3 cut(s)	15, 373, 945
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	8 cut(s)	134, 520, 734, 767, 870, 1009, 1133, 1145
BsoBI	CYCGRG	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	104, 990
Bsp1407I	TGTACA	1 cut(s)	1032
Bsp143I	GATC	3 cut(s)	164, 502, 506
BspACI	CCGC	3 cut(s)	146, 332, 382
BspANI	GGCC	8 cut(s)	134, 520, 734, 767, 870, 1009, 1133, 1145
BspCNI	CTCAG	4 cut(s)	813, 961, 995, 1007
BspDI	ATCGAT	1 cut(s)	505
BspHI	TCATGA	2 cut(s)	369, 924
BspLI	GGNNCC	2 cut(s)	1156, 1182
BspPI	GGATC	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	1180
BsrBI	CCGCTC	1 cut(s)	382
BsrDI	GCAATG	2 cut(s)	362, 1121
BsrFI	RCCGGY	3 cut(s)	312, 516, 866
BsrGI	TGTACA	1 cut(s)	1032
BsrI	ACTGG	2 cut(s)	290, 1010
BssAI	RCCGGY	3 cut(s)	312, 516, 866
BssECI	CCNNGG	4 cut(s)	83, 355, 720, 769
BssMI	GATC	3 cut(s)	164, 502, 506
BssT1I	CCWWGG	3 cut(s)	83, 355, 769
Bst4CI	ACNGT	3 cut(s)	232, 556, 685
Bst6I	CTCTTC	1 cut(s)	826
BstAPI	GCANNNNNTGC	1 cut(s)	1180
BstAUI	TGTACA	1 cut(s)	1032
BstC8I	GCNNGC	5 cut(s)	46, 204, 518, 858, 868
BstDEI	CTNAG	5 cut(s)	800, 969, 982, 994, 1170
BstENI	CCTNNNNNAGG	1 cut(s)	1138
BstF5I	GGATG	2 cut(s)	262, 445
BstKTI	GATC	3 cut(s)	167, 505, 509
BstMAI	GTCTC	1 cut(s)	985
BstMBI	GATC	3 cut(s)	164, 502, 506
BstMWI	GCNNNNNNNGC	7 cut(s)	158, 338, 398, 764, 1036, 1058, 1180
BstSCI	CCNGG	1 cut(s)	720
BstV1I	GCAGC	3 cut(s)	193, 526, 745
BstV2I	GAAGAC	1 cut(s)	2
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
Bsu15I	ATCGAT	1 cut(s)	505
BsuRI	GGCC	8 cut(s)	134, 520, 734, 767, 870, 1009, 1133, 1145
BsuTUI	ATCGAT	1 cut(s)	505
BtsCI	GGATG	2 cut(s)	262, 445
Cac8I	GCNNGC	5 cut(s)	46, 204, 518, 858, 868
CciI	TCATGA	2 cut(s)	369, 924
Cfr10I	RCCGGY	3 cut(s)	312, 516, 866
Cfr13I	GGNCC	4 cut(s)	443, 766, 1143, 1154
ClaI	ATCGAT	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	565, 1033
CspAI	ACCGGT	1 cut(s)	312
CviAII	CATG	3 cut(s)	370, 595, 925
CviQI	GTAC	2 cut(s)	565, 1033
DdeI	CTNAG	5 cut(s)	800, 969, 982, 994, 1170
DpnI	GATC	3 cut(s)	166, 504, 508
DpnII	GATC	3 cut(s)	164, 502, 506
EaeI	YGGCCR	1 cut(s)	1007
Eam1104I	CTCTTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	826
Ecl136II	GAGCTC	1 cut(s)	988
Eco130I	CCWWGG	3 cut(s)	83, 355, 769
Eco147I	AGGCCT	1 cut(s)	734
Eco24I	GRGCYC	1 cut(s)	990
Eco32I	GATATC	1 cut(s)	717
Eco47I	GGWCC	2 cut(s)	443, 1154
Eco53kI	GAGCTC	1 cut(s)	988
Eco57I	CTGAAG	3 cut(s)	153, 218, 291
Eco88I	CYCGRG	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	988
EcoNI	CCTNNNNNAGG	1 cut(s)	1138
EcoO109I	RGGNCCY	1 cut(s)	1154
EcoRV	GATATC	1 cut(s)	717
EcoT14I	CCWWGG	3 cut(s)	83, 355, 769
EcoT38I	GRGCYC	1 cut(s)	990
ErhI	CCWWGG	3 cut(s)	83, 355, 769
FaeI	CATG	3 cut(s)	373, 598, 928
FalI	AAGNNNNNCTT	2 cut(s)	840, 872
FaqI	GGGAC	3 cut(s)	15, 373, 945
FatI	CATG	3 cut(s)	369, 594, 924
FauNDI	CATATG	1 cut(s)	1093
Fnu4HI	GCNGC	4 cut(s)	207, 383, 540, 759
FokI	GGATG	2 cut(s)	269, 452
FriOI	GRGCYC	1 cut(s)	990
Fsp4HI	GCNGC	4 cut(s)	207, 383, 540, 759
FspBI	CTAG	7 cut(s)	356, 434, 822, 948, 999, 1046, 1185
GluI	GCNGC	4 cut(s)	207, 383, 540, 759
GsaI	CCCAGC	2 cut(s)	59, 113
HaeIII	GGCC	8 cut(s)	134, 520, 734, 767, 870, 1009, 1133, 1145
HapII	CCGG	6 cut(s)	313, 377, 517, 704, 722, 867
Hin1II	CATG	3 cut(s)	373, 598, 928
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	3 cut(s)	28, 725, 1042
HpaII	CCGG	6 cut(s)	313, 377, 517, 704, 722, 867
HphI	GGTGA	4 cut(s)	37, 332, 718, 913
Hpy166II	GTNNAC	2 cut(s)	574, 751
Hpy188I	TCNGA	5 cut(s)	172, 550, 803, 877, 985
Hpy188III	TCNNGA	5 cut(s)	370, 476, 630, 925, 1046
Hpy8I	GTNNAC	2 cut(s)	574, 751
Hpy99I	CGWCG	1 cut(s)	390
HpyAV	CCTTC	9 cut(s)	172, 266, 414, 595, 596, 892, 922, 967, 1134
HpyCH4III	ACNGT	3 cut(s)	232, 556, 685
HpyCH4V	TGCA	5 cut(s)	78, 152, 417, 761, 1052
HpyF10VI	GCNNNNNNNGC	7 cut(s)	158, 338, 398, 764, 1036, 1058, 1180
HpyF3I	CTNAG	5 cut(s)	800, 969, 982, 994, 1170
Hsp92II	CATG	3 cut(s)	373, 598, 928
KroI	GCCGGC	2 cut(s)	516, 866
KroNI	GCCGGC	2 cut(s)	518, 868
Kzo9I	GATC	3 cut(s)	164, 502, 506
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	3 cut(s)	193, 526, 745
LweI	GCATC	5 cut(s)	526, 808, 1028, 1039, 1127
MaeI	CTAG	7 cut(s)	356, 434, 822, 948, 999, 1046, 1185
MaeIII	GTNAC	1 cut(s)	901
MalI	GATC	3 cut(s)	166, 504, 508
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	3 cut(s)	164, 502, 506
MboII	GAAGA	4 cut(s)	5, 159, 827, 843
MfeI	CAATTG	1 cut(s)	1053
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	2 cut(s)	104, 990
MlsI	TGGCCA	1 cut(s)	1009
MluCI	AATT	6 cut(s)	72, 95, 774, 1053, 1075, 1163
MluNI	TGGCCA	1 cut(s)	1009
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	2 cut(s)	667, 790
MnlI	CCTC	7 cut(s)	81, 166, 316, 745, 821, 958, 1168
Mox20I	TGGCCA	1 cut(s)	1009
MroNI	GCCGGC	2 cut(s)	516, 866
MscI	TGGCCA	1 cut(s)	1009
MseI	TTAA	1 cut(s)	1166
Msp20I	TGGCCA	1 cut(s)	1009
MspI	CCGG	6 cut(s)	313, 377, 517, 704, 722, 867
MspR9I	CCNGG	1 cut(s)	722
MunI	CAATTG	1 cut(s)	1053
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	7 cut(s)	158, 338, 398, 764, 1036, 1058, 1180
NaeI	GCCGGC	2 cut(s)	518, 868
NciI	CCSGG	1 cut(s)	722
NdeI	CATATG	1 cut(s)	1093
NdeII	GATC	3 cut(s)	164, 502, 506
NgoMIV	GCCGGC	2 cut(s)	516, 866
NlaIII	CATG	3 cut(s)	373, 598, 928
NlaIV	GGNNCC	2 cut(s)	1156, 1182
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	901
PagI	TCATGA	2 cut(s)	369, 924
PceI	AGGCCT	1 cut(s)	734
PctI	GAATGC	1 cut(s)	46
PdiI	GCCGGC	2 cut(s)	518, 868
PfeI	GAWTC	2 cut(s)	725, 1042
PinAI	ACCGGT	1 cut(s)	312
PkrI	GCNGC	4 cut(s)	208, 384, 541, 760
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	1154
Psp124BI	GAGCTC	1 cut(s)	990
Psp5II	RGGWCCY	1 cut(s)	1154
PspFI	CCCAGC	2 cut(s)	55, 109
PspN4I	GGNNCC	2 cut(s)	1156, 1182
PspPI	GGNCC	4 cut(s)	443, 766, 1143, 1154
PspPPI	RGGWCCY	1 cut(s)	1154
PsuI	RGATCY	1 cut(s)	164
RsaI	GTAC	2 cut(s)	566, 1034
RsaNI	GTAC	2 cut(s)	565, 1033
SacI	GAGCTC	1 cut(s)	990
SaqAI	TTAA	1 cut(s)	1166
SatI	GCNGC	4 cut(s)	207, 383, 540, 759
Sau3AI	GATC	3 cut(s)	164, 502, 506
Sau96I	GGNCC	4 cut(s)	443, 766, 1143, 1154
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	722
SduI	GDGCHC	2 cut(s)	104, 990
SfaNI	GCATC	5 cut(s)	526, 808, 1028, 1039, 1127
SinI	GGWCC	2 cut(s)	443, 1154
SmlI	CTYRAG	1 cut(s)	619
SmoI	CTYRAG	1 cut(s)	619
Sse9I	AATT	6 cut(s)	72, 95, 774, 1053, 1075, 1163
SseBI	AGGCCT	1 cut(s)	734
SsiI	CCGC	3 cut(s)	146, 332, 382
SspMI	CTAG	7 cut(s)	356, 434, 822, 948, 999, 1046, 1185
SstI	GAGCTC	1 cut(s)	990
StuI	AGGCCT	1 cut(s)	734
StyD4I	CCNGG	1 cut(s)	720
StyI	CCWWGG	3 cut(s)	83, 355, 769
TaaI	ACNGT	3 cut(s)	232, 556, 685
TaqI	TCGA	1 cut(s)	505
TaqII	GACCGA	1 cut(s)	495
TasI	AATT	6 cut(s)	72, 95, 774, 1053, 1075, 1163
TatI	WGTACW	1 cut(s)	1032
TauI	GCSGC	1 cut(s)	385
TfiI	GAWTC	2 cut(s)	725, 1042
Tru1I	TTAA	1 cut(s)	1166
Tru9I	TTAA	1 cut(s)	1166
TseFI	GTSAC	1 cut(s)	901
TseI	GCWGC	3 cut(s)	206, 539, 758
Tsp45I	GTSAC	1 cut(s)	901
TspDTI	ATGAA	6 cut(s)	201, 273, 444, 663, 913, 941
TspGWI	ACGGA	1 cut(s)	277
VpaK11BI	GGWCC	2 cut(s)	443, 1154
XagI	CCTNNNNNAGG	1 cut(s)	1138
XapI	RAATTY	1 cut(s)	72
XbaI	TCTAGA	1 cut(s)	1045
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmaJI	CCTAGG	1 cut(s)	355
XspI	CTAG	7 cut(s)	356, 434, 822, 948, 999, 1046, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.