Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003237

Physical Location & Seq

Genomic Coordinates Reverse (-)

22250382 .. 22252558

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0238800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGCTTGCTCTCAGCTTAGGCGATGCTCCAAAGCAGTTTCTCTTCCTTGACAAAACCCCAAGCATGGGTAGCAACAAGGATCTAGGGTTTTGCATGGCCCTAGGAAGCAGGGAAAGCCGTGAAGGTTATGATCAAGAAGATGAGAGTAGTCGAAGAAGAAGAAGGGTTTCATCAGATCCACCTATTCAGCTCAATCTCTTGCCTTCTGCCCCGGTTATGAAGACTTCTTCTCAGCTTCGCTTCCCCTGGCTCACTGATAACTTGGCAGTGTCCGAACCGGCCGGTCTAGATGAACCAGGAAAGGGGCTGGATGTAAATCGGTTCCCCTTGGTGGCGGGTACGGCCGATGAGGCAGAAGACGCGGCGGCGCAGCTCTCTTCTCCGAACAGCACCGTGTCGTCGTTCCAGATGGATTTCGGTGTTAGGAGAAGCAAGAGAGACTTGGATTTGGAGGTGCTCGAGACGGAGAGAGCGAGTTCAAGAGCGAGTGACGACGACGAGAACGGGTCGACTCGGAAGAAACTCAGGCTCTCCAAGGACCAATCGGCTTTTCTTGAAGAGAGCTTCAAAGAACACAGCACCTTAAATCCCAAGCAAAAAATAGCTCTGGCAAAACAGTTAAATCTTCGTCCCCGCCAAGTGGAAGTGTGGTTTCAGAATCGAAGAGCAAGGACCAAGCTGAAGCAAACAGAAGTAGATTGTGAGTACTTAAAGAGGTGCTGCGAAACACTGACAGAAGAGAACAGAAGGTTACAAAAGGAACTGCAAGAATTAAGAGCCTTGAAAACCTCTCAACCTTTCTACATGCAGCTTCCTGCCACCACTCTCACAATGTGTCCCTCCTGTGAGCGCGTCGTCACTACCGCCTCCCCCAACACTACTACCACCAACCCAACCACCAACACCACCATCAAGTCTTCTTCTCCTTCTTCTGGTCTAACCAATAACCATTCAAGGTTACACAGTCACGTTCCCTTTGCTCAAGCCCAGGCTCACATGCAGCCTCAGGTCCAAGCTAACAAAGGTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00906 ko01062 ko01100 ko01110 map00906 map01062 map01100 map01110

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

345

Amino Acids

38.49

Weight (kDa)

8.47

Isoelectric Point (pI)

65.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD-ZIP_N	PF04618	27 - 147	1.1e-07	HD-ZIP protein N terminus
Homeodomain	PF00046	173 - 227	1.8e-15	Homeodomain
HALZ	PF02183	229 - 263	8.9e-11	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17230 AT5G17230 AT5G17230 AT5G17230
fragaria_vesca	FvH4_1g27480 FvH4_6g38780
malus_domestica	MD09G1146800.v1.1 MD09G1281300.v1.1 MD17G1133400.v1.1
prunus_persica	Prupe.3G013200_v2.0.a1 Prupe.3G013200_v2.0.a1 Prupe.3G178500_v2.0.a1
pyrus_communis	pycom09g06720 pycom09g18890 pycom17g12790
rosa_chinensis	RchiOBHm_Chr2g0152351 RchiOBHm_Chr3g0488531
rosa_laevigata	RLG00000020629 RLG00000022946
rosa_multiflora	Rmu_sc0005885.1_g000002 Rmu_sc0019526.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095770 Rroxscaffold_6G00394200
rosa_rugosa	Rorug02G0432500 Rorug03G0238700 Rorug03G0238800 Rorug03G0238900 Rorug03G0239000
rosa_samantha	Rh2AG494000 Rh2BG506300 Rh2CG480300 Rh2DG517400 Rh3AG287700 Rh3CG321800 Rh3DG320600
rosa_wichuraiana	Rw2G040650 Rw3G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	512
AccII	CGCG	2 cut(s)	365, 855
AciI	CCGC	5 cut(s)	338, 365, 368, 637, 867
AclWI	GGATC	2 cut(s)	90, 173
AcoI	YGGCCR	2 cut(s)	282, 345
AcuI	CTGAAG	1 cut(s)	704
AdeI	CACNNNGTG	1 cut(s)	837
AfaI	GTAC	2 cut(s)	343, 710
AfiI	CCNNNNNNNGG	6 cut(s)	67, 68, 305, 334, 643, 935
AgsI	TTSAA	5 cut(s)	483, 560, 571, 787, 957
AjnI	CCWGG	3 cut(s)	248, 298, 990
AjuI	GAANNNNNNNTTGG	2 cut(s)	537, 569
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	2 cut(s)	435, 458
AlwI	GGATC	2 cut(s)	90, 173
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	3 cut(s)	99, 282, 345
ApeKI	GCWGC	5 cut(s)	373, 723, 811, 1003, 1031
Asp700I	GAANNNNTTC	1 cut(s)	169
AspA2I	CCTAGG	1 cut(s)	103
AspLEI	GCGC	2 cut(s)	373, 855
AspS9I	GGNCC	4 cut(s)	100, 541, 675, 1012
AsuC2I	CCSGG	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	3 cut(s)	541, 675, 1012
AvrII	CCTAGG	1 cut(s)	103
AxyI	CCTNAGG	1 cut(s)	1008
BbsI	GAAGAC	3 cut(s)	230, 366, 912
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	5 cut(s)	385, 710, 823, 1015, 1018
BccI	CCATC	2 cut(s)	406, 920
BceAI	ACGGC	2 cut(s)	105, 360
BciT130I	CCWGG	3 cut(s)	250, 300, 992
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	435, 458
BfaI	CTAG	3 cut(s)	86, 104, 290
BglI	GCCNNNNNGGC	1 cut(s)	353
BisI	GCNGC	7 cut(s)	366, 369, 374, 724, 812, 1004, 1032
BlnI	CCTAGG	1 cut(s)	103
BlsI	GCNGC	7 cut(s)	367, 370, 375, 725, 813, 1005, 1033
BmcAI	AGTACT	1 cut(s)	710
Bme1390I	CCNGG	4 cut(s)	215, 250, 300, 992
Bme18I	GGWCC	3 cut(s)	541, 675, 1012
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	4 cut(s)	100, 541, 675, 1012
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	4 cut(s)	215, 250, 300, 992
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	3 cut(s)	230, 366, 912
Bpu10I	CCTNAGC	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	969
BpuMI	CCSGG	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	318
BsaJI	CCNNGG	6 cut(s)	103, 213, 248, 330, 537, 990
Bsc4I	CCNNNNNNNGG	6 cut(s)	67, 68, 305, 334, 643, 935
Bse118I	RCCGGY	2 cut(s)	280, 284
Bse21I	CCTNAGG	1 cut(s)	1008
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	3 cut(s)	250, 300, 992
BseDI	CCNNGG	6 cut(s)	103, 213, 248, 330, 537, 990
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	6 cut(s)	67, 68, 305, 334, 643, 935
BseMII	CTCAG	4 cut(s)	28, 248, 541, 1022
BseX3I	CGGCCG	2 cut(s)	282, 345
BseXI	GCAGC	5 cut(s)	385, 710, 823, 1015, 1018
Bsh1236I	CGCG	2 cut(s)	365, 855
Bsh1285I	CGRYCG	2 cut(s)	285, 348
BshFI	GGCC	3 cut(s)	101, 284, 347
BsiEI	CGRYCG	2 cut(s)	285, 348
BsiHKAI	GWGCWC	1 cut(s)	462
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	3 cut(s)	215, 281, 285
BslFI	GGGAC	2 cut(s)	618, 825
BslI	CCNNNNNNNGG	6 cut(s)	67, 68, 305, 334, 643, 935
BsmAI	GTCTC	2 cut(s)	435, 458
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	2 cut(s)	618, 825
BsnI	GGCC	3 cut(s)	101, 284, 347
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	3 cut(s)	82, 133, 178
BspACI	CCGC	5 cut(s)	338, 365, 368, 637, 867
BspANI	GGCC	3 cut(s)	101, 284, 347
BspCNI	CTCAG	4 cut(s)	27, 247, 540, 1021
BspFNI	CGCG	2 cut(s)	365, 855
BspLI	GGNNCC	1 cut(s)	326
BspPI	GGATC	2 cut(s)	90, 173
BspQI	GCTCTTC	1 cut(s)	661
BsrFI	RCCGGY	2 cut(s)	280, 284
BssAI	RCCGGY	2 cut(s)	280, 284
BssECI	CCNNGG	6 cut(s)	103, 213, 248, 330, 537, 990
BssMI	GATC	3 cut(s)	82, 133, 178
BssT1I	CCWWGG	3 cut(s)	103, 330, 537
Bst2UI	CCWGG	3 cut(s)	250, 300, 992
Bst4CI	ACNGT	3 cut(s)	397, 621, 968
Bst6I	CTCTTC	5 cut(s)	50, 385, 555, 661, 735
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	5 cut(s)	14, 19, 234, 527, 1008
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	2 cut(s)	365, 855
BstHHI	GCGC	2 cut(s)	373, 855
BstKTI	GATC	3 cut(s)	85, 136, 181
BstMAI	GTCTC	2 cut(s)	435, 458
BstMBI	GATC	3 cut(s)	82, 133, 178
BstMCI	CGRYCG	2 cut(s)	285, 348
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 117, 344, 353, 362
BstNI	CCWGG	3 cut(s)	250, 300, 992
BstNSI	RCATGY	2 cut(s)	811, 1003
BstSCI	CCNGG	4 cut(s)	213, 248, 298, 990
BstUI	CGCG	2 cut(s)	365, 855
BstV1I	GCAGC	5 cut(s)	385, 710, 823, 1015, 1018
BstV2I	GAAGAC	3 cut(s)	230, 366, 912
BstX2I	RGATCY	2 cut(s)	82, 178
BstYI	RGATCY	2 cut(s)	82, 178
BstZI	CGGCCG	2 cut(s)	282, 345
Bsu36I	CCTNAGG	1 cut(s)	1008
BsuRI	GGCC	3 cut(s)	101, 284, 347
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	255, 276, 731
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	2 cut(s)	373, 855
Cfr10I	RCCGGY	2 cut(s)	280, 284
Cfr13I	GGNCC	4 cut(s)	100, 541, 675, 1012
CseI	GACGC	2 cut(s)	371, 844
Csp6I	GTAC	2 cut(s)	342, 709
CviAII	CATG	5 cut(s)	67, 97, 808, 1000, 1035
CviQI	GTAC	2 cut(s)	342, 709
DdeI	CTNAG	5 cut(s)	14, 19, 234, 527, 1008
DpnI	GATC	3 cut(s)	84, 135, 180
DpnII	GATC	3 cut(s)	82, 133, 178
DraIII	CACNNNGTG	1 cut(s)	837
EaeI	YGGCCR	2 cut(s)	282, 345
EagI	CGGCCG	2 cut(s)	282, 345
Eam1104I	CTCTTC	5 cut(s)	50, 385, 555, 661, 735
EarI	CTCTTC	5 cut(s)	50, 385, 555, 661, 735
EclXI	CGGCCG	2 cut(s)	282, 345
Eco130I	CCWWGG	3 cut(s)	103, 330, 537
Eco47I	GGWCC	3 cut(s)	541, 675, 1012
Eco52I	CGGCCG	2 cut(s)	282, 345
Eco57I	CTGAAG	1 cut(s)	704
Eco81I	CCTNAGG	1 cut(s)	1008
Eco88I	CYCGRG	1 cut(s)	461
EcoRII	CCWGG	3 cut(s)	248, 298, 990
EcoT14I	CCWWGG	3 cut(s)	103, 330, 537
ErhI	CCWWGG	3 cut(s)	103, 330, 537
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	5 cut(s)	70, 100, 811, 1003, 1038
FaiI	YATR	7 cut(s)	68, 98, 132, 221, 809, 1001, 1036
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	2 cut(s)	618, 825
FatI	CATG	5 cut(s)	66, 96, 807, 999, 1034
FauI	CCCGC	2 cut(s)	331, 644
FbaI	TGATCA	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	512
Fnu4HI	GCNGC	7 cut(s)	366, 369, 374, 724, 812, 1004, 1032
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	7 cut(s)	366, 369, 374, 724, 812, 1004, 1032
FspBI	CTAG	3 cut(s)	86, 104, 290
GlaI	GCGC	2 cut(s)	372, 854
GluI	GCNGC	7 cut(s)	366, 369, 374, 724, 812, 1004, 1032
HaeIII	GGCC	3 cut(s)	101, 284, 347
HapII	CCGG	3 cut(s)	215, 281, 285
HgaI	GACGC	2 cut(s)	371, 844
HhaI	GCGC	2 cut(s)	373, 855
Hin1II	CATG	5 cut(s)	70, 100, 811, 1003, 1038
Hin6I	GCGC	2 cut(s)	371, 853
HinP1I	GCGC	2 cut(s)	371, 853
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	2 cut(s)	514, 661
HpaII	CCGG	3 cut(s)	215, 281, 285
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	5 cut(s)	178, 277, 387, 519, 660
Hpy188III	TCNNGA	6 cut(s)	137, 290, 409, 463, 483, 557
Hpy8I	GTNNAC	1 cut(s)	513
Hpy99I	CGWCG	4 cut(s)	406, 500, 503, 860
HpyAV	CCTTC	5 cut(s)	119, 159, 216, 744, 939
HpyCH4III	ACNGT	3 cut(s)	397, 621, 968
HpyCH4IV	ACGT	1 cut(s)	972
HpyCH4V	TGCA	5 cut(s)	96, 769, 811, 1003, 1034
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 117, 344, 353, 362
HpyF3I	CTNAG	5 cut(s)	14, 19, 234, 527, 1008
HpySE526I	ACGT	1 cut(s)	972
Hsp92II	CATG	5 cut(s)	70, 100, 811, 1003, 1038
HspAI	GCGC	2 cut(s)	371, 853
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	82, 133, 178
LguI	GCTCTTC	1 cut(s)	661
LmnI	GCTCC	2 cut(s)	4, 34
Lsp1109I	GCAGC	5 cut(s)	385, 710, 823, 1015, 1018
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	3 cut(s)	86, 104, 290
MaeII	ACGT	1 cut(s)	972
MaeIII	GTNAC	5 cut(s)	491, 753, 859, 960, 968
MalI	GATC	3 cut(s)	84, 135, 180
MboI	GATC	3 cut(s)	82, 133, 178
MflI	RGATCY	2 cut(s)	82, 178
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	1 cut(s)	773
MlyI	GAGTC	1 cut(s)	508
MnlI	CCTC	7 cut(s)	346, 448, 711, 802, 853, 880, 1017
MroXI	GAANNNNTTC	1 cut(s)	169
MseI	TTAA	4 cut(s)	587, 623, 713, 776
MspI	CCGG	3 cut(s)	215, 281, 285
MspR9I	CCNGG	4 cut(s)	215, 250, 300, 992
MvaI	CCWGG	3 cut(s)	250, 300, 992
MvnI	CGCG	2 cut(s)	365, 855
MwoI	GCNNNNNNNGC	5 cut(s)	72, 117, 344, 353, 362
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	3 cut(s)	82, 133, 178
NlaIII	CATG	5 cut(s)	70, 100, 811, 1003, 1038
NlaIV	GGNNCC	1 cut(s)	326
NmuCI	GTSAC	3 cut(s)	491, 859, 968
NspI	RCATGY	2 cut(s)	811, 1003
PaeR7I	CTCGAG	1 cut(s)	461
PciSI	GCTCTTC	1 cut(s)	661
PcsI	WCGNNNNNNNCGW	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	661
PkrI	GCNGC	7 cut(s)	367, 370, 375, 725, 813, 1005, 1033
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
Psp6I	CCWGG	3 cut(s)	248, 298, 990
PspGI	CCWGG	3 cut(s)	248, 298, 990
PspN4I	GGNNCC	1 cut(s)	326
PspPI	GGNCC	4 cut(s)	100, 541, 675, 1012
PsuI	RGATCY	2 cut(s)	82, 178
RsaI	GTAC	2 cut(s)	343, 710
RsaNI	GTAC	2 cut(s)	342, 709
SalI	GTCGAC	1 cut(s)	511
SapI	GCTCTTC	1 cut(s)	661
SaqAI	TTAA	4 cut(s)	587, 623, 713, 776
SatI	GCNGC	7 cut(s)	366, 369, 374, 724, 812, 1004, 1032
Sau3AI	GATC	3 cut(s)	82, 133, 178
Sau96I	GGNCC	4 cut(s)	100, 541, 675, 1012
ScaI	AGTACT	1 cut(s)	710
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	4 cut(s)	215, 250, 300, 992
SduI	GDGCHC	1 cut(s)	462
SfaNI	GCATC	1 cut(s)	16
Sfr274I	CTCGAG	1 cut(s)	461
SinI	GGWCC	3 cut(s)	541, 675, 1012
SlaI	CTCGAG	1 cut(s)	461
SmlI	CTYRAG	2 cut(s)	461, 984
SmoI	CTYRAG	2 cut(s)	461, 984
Sse9I	AATT	1 cut(s)	773
SsiI	CCGC	5 cut(s)	338, 365, 368, 637, 867
SspMI	CTAG	3 cut(s)	86, 104, 290
StyD4I	CCNGG	4 cut(s)	213, 248, 298, 990
StyI	CCWWGG	3 cut(s)	103, 330, 537
TaaI	ACNGT	3 cut(s)	397, 621, 968
TaiI	ACGT	1 cut(s)	975
TaqI	TCGA	4 cut(s)	154, 462, 512, 664
TasI	AATT	1 cut(s)	773
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	2 cut(s)	368, 371
TfiI	GAWTC	1 cut(s)	661
Tru1I	TTAA	4 cut(s)	587, 623, 713, 776
Tru9I	TTAA	4 cut(s)	587, 623, 713, 776
TscAI	CASTG	3 cut(s)	262, 276, 738
TseFI	GTSAC	3 cut(s)	491, 859, 968
TseI	GCWGC	5 cut(s)	373, 723, 811, 1003, 1031
Tsp45I	GTSAC	3 cut(s)	491, 859, 968
TspDTI	ATGAA	3 cut(s)	162, 236, 309
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	3 cut(s)	262, 276, 738
VpaK11BI	GGWCC	3 cut(s)	541, 675, 1012
XbaI	TCTAGA	1 cut(s)	289
XceI	RCATGY	2 cut(s)	811, 1003
XhoI	CTCGAG	1 cut(s)	461
XmaJI	CCTAGG	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	169
XspI	CTAG	3 cut(s)	86, 104, 290
ZrmI	AGTACT	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.