Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003237

Physical Location & Seq

Genomic Coordinates Forward (+)

19498687 .. 19501428

Gene Structure 2742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G178500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTCAGGTGTTCTTCTTTGGGTGGTTAGTCCCAAAGAGAATGCCAACTCTCTGCTGAGTCTCATGCCCAGAATTGGTAGCCCAAGGAGGTCAAAACTGTGCTCTAGGCTGACTTTTTCAACTGGGGTTTTAGCTTACTCAGGTGCAGTTGCGCACCCAATAAGATCATCAGAAGAAATGGTCTATGAAGTGGTGCTCAAGCAGGCTGCTTTGGTTAGAGAACAGAGCAGGGTCAAGGAGAGAGCTTTGGACTTGGATGAACGGATTGAAACTGATGGTCTGAGCAATTGGGATTTGTTGAATCAGGCTTATGATCGATGTGGTGAGGTCTGTGCTGAATATGCCAAGACGTTTTACTTGGGCACATTACTCATGACACCAGAGCGGCGACGAGCTGTTTGGGCAATTTATGTGTGGTGCAGAAGGACAGATGAGCTAGTGGATGGACCAAATGCTTCATACATCACACCCAAAGCTCTTGACAGATGGGAGAAAAGATTAACGGATCTTTTCGAAGGTCGTCCGTATGATATGTATGATGCTGCTCTATCTGATACAGTCTCCAAATACCCTGTTGATATACAGCCCTTCAAAGACATGGTAGAAGGAATGAGATTAGACTTAATAAAATCAAGATACCAGAACTTTGATGAACTTTACCTCTACTGCTACTATGTTGCTGGGACTGTAGGCCTAATGAGTGTTCCGGTAATGGGGATAAGCCCAGAATCAAAGGCTTCAACAGAGACTGTTTACAATGCTGCATTGGCCCTTGGAATAGCTAATCAGCTCACTAATATACTCAGAGATGTTGGAGAAGATGCCAGGAGAGGAAGAGTGTATCTCCCACAAGATGAGCTTGCCCAAGCCGGCCTATCAGACGATGACATCTTTCAAGGAAAGGTGACTGACAAGTGGAAAATGTTCATGAAGGGCCAAATAAAGAGAGCTAGGATGTTTTTTGATGAGGCTGAGAAAGGTGTTTCAGAACTCAACTCAGCTAGTAGATGGCCAGTGTGGGCATCTTTGCTGCTGTACAGGCAGATTCTGGATGCTATTGAAGCAAATGGTTATGACAATTTCACAAAAAGGGCTTATGTTGGGAAAGCAAAGAAGTTAGTATCATTGCCTGTGGCATATGGCAGAGCGGTTATAGGACCCTCTAAATTAACTAAGCAGTTGGTGTCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00906 ko01062 ko01100 ko01110 map00906 map01062 map01100 map01110

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

398

Amino Acids

44.92

Weight (kDa)

8.59

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17230 AT5G17230 AT5G17230 AT5G17230
fragaria_vesca	FvH4_1g27480 FvH4_6g38780
malus_domestica	MD09G1146800.v1.1 MD09G1281300.v1.1 MD17G1133400.v1.1
prunus_persica	Prupe.3G013200_v2.0.a1 Prupe.3G013200_v2.0.a1 Prupe.3G178500_v2.0.a1
pyrus_communis	pycom09g06720 pycom09g18890 pycom17g12790
rosa_chinensis	RchiOBHm_Chr2g0152351 RchiOBHm_Chr3g0488531
rosa_laevigata	RLG00000020629 RLG00000022946
rosa_multiflora	Rmu_sc0005885.1_g000002 Rmu_sc0019526.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095770 Rroxscaffold_6G00394200
rosa_rugosa	Rorug02G0432500 Rorug03G0238700 Rorug03G0238800 Rorug03G0238900 Rorug03G0239000
rosa_samantha	Rh2AG494000 Rh2BG506300 Rh2CG480300 Rh2DG517400 Rh3AG287700 Rh3CG321800 Rh3DG320600
rosa_wichuraiana	Rw2G040650 Rw3G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	153
AccBSI	CCGCTC	2 cut(s)	385, 1148
AciI	CCGC	2 cut(s)	385, 1148
AclWI	GGATC	1 cut(s)	513
AcoI	YGGCCR	1 cut(s)	1010
AfaI	GTAC	1 cut(s)	1037
AfiI	CCNNNNNNNGG	2 cut(s)	74, 713
AgsI	TTSAA	7 cut(s)	120, 269, 301, 592, 741, 896, 1061
AjnI	CCWGG	1 cut(s)	824
Alw21I	GWGCWC	2 cut(s)	104, 198
Alw26I	GTCTC	3 cut(s)	65, 565, 740
AlwI	GGATC	1 cut(s)	513
AlwNI	CAGNNNCTG	2 cut(s)	749, 1048
AoxI	GGCC	5 cut(s)	691, 768, 871, 934, 1010
ApeKI	GCWGC	4 cut(s)	206, 542, 761, 1030
ArsI	GACNNNNNNTTYG	2 cut(s)	381, 413
Asp700I	GAANNNNTTC	1 cut(s)	923
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	4 cut(s)	446, 769, 934, 1157
AsuHPI	GGTGA	2 cut(s)	335, 916
AsuII	TTCGAA	1 cut(s)	513
AvaII	GGWCC	2 cut(s)	446, 1157
BaeGI	GKGCMC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	1012
Bbv12I	GWGCWC	2 cut(s)	104, 198
BbvI	GCAGC	4 cut(s)	193, 529, 748, 1017
BccI	CCATC	4 cut(s)	269, 437, 480, 1002
BciT130I	CCWGG	1 cut(s)	826
BcoDI	GTCTC	3 cut(s)	65, 565, 740
BfaI	CTAG	4 cut(s)	105, 437, 951, 1002
BfmI	CTRYAG	1 cut(s)	687
BisI	GCNGC	5 cut(s)	207, 386, 543, 762, 1031
BlsI	GCNGC	5 cut(s)	208, 387, 544, 763, 1032
Bme1390I	CCNGG	1 cut(s)	826
Bme18I	GGWCC	2 cut(s)	446, 1157
BmgT120I	GGNCC	4 cut(s)	446, 769, 934, 1157
BmiI	GGNNCC	1 cut(s)	1159
BmrFI	CCNGG	1 cut(s)	826
BmrI	ACTGGG	1 cut(s)	132
BmsI	GCATC	4 cut(s)	529, 811, 1031, 1042
BmuI	ACTGGG	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	828, 860
Bpu14I	TTCGAA	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	83, 772
BsaWI	WCCGGW	1 cut(s)	706
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 713
Bse118I	RCCGGY	1 cut(s)	869
Bse1I	ACTGG	2 cut(s)	127, 1013
Bse3DI	GCAATG	1 cut(s)	1124
BseBI	CCWGG	1 cut(s)	826
BseCI	ATCGAT	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	83, 772
BseGI	GGATG	4 cut(s)	262, 448, 960, 1057
BseLI	CCNNNNNNNGG	2 cut(s)	74, 713
BseMI	GCAATG	1 cut(s)	1124
BseMII	CTCAG	6 cut(s)	47, 153, 272, 817, 963, 1011
BseNI	ACTGG	2 cut(s)	127, 1013
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	4 cut(s)	193, 529, 748, 1017
BseYI	CCCAGC	1 cut(s)	680
BsgI	GTGCAG	2 cut(s)	165, 439
BshFI	GGCC	5 cut(s)	693, 770, 873, 936, 1012
BshVI	ATCGAT	1 cut(s)	316
BsiHKAI	GWGCWC	2 cut(s)	104, 198
BsiSI	CCGG	2 cut(s)	707, 870
BslFI	GGGAC	2 cut(s)	15, 697
BslI	CCNNNNNNNGG	2 cut(s)	74, 713
BsmAI	GTCTC	3 cut(s)	65, 565, 740
BsmFI	GGGAC	2 cut(s)	15, 697
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	5 cut(s)	693, 770, 873, 936, 1012
Bsp119I	TTCGAA	1 cut(s)	513
Bsp1286I	GDGCHC	3 cut(s)	104, 198, 365
Bsp1407I	TGTACA	1 cut(s)	1035
Bsp143I	GATC	3 cut(s)	164, 313, 505
BspACI	CCGC	2 cut(s)	385, 1148
BspANI	GGCC	5 cut(s)	693, 770, 873, 936, 1012
BspCNI	CTCAG	6 cut(s)	48, 152, 273, 816, 964, 1010
BspDI	ATCGAT	1 cut(s)	316
BspHI	TCATGA	2 cut(s)	372, 927
BspLI	GGNNCC	1 cut(s)	1159
BspPI	GGATC	1 cut(s)	513
BspT104I	TTCGAA	1 cut(s)	513
BsrBI	CCGCTC	2 cut(s)	385, 1148
BsrDI	GCAATG	1 cut(s)	1124
BsrFI	RCCGGY	1 cut(s)	869
BsrGI	TGTACA	1 cut(s)	1035
BsrI	ACTGG	2 cut(s)	127, 1013
BssAI	RCCGGY	1 cut(s)	869
BssECI	CCNNGG	2 cut(s)	83, 772
BssMI	GATC	3 cut(s)	164, 313, 505
BssT1I	CCWWGG	2 cut(s)	83, 772
Bst2UI	CCWGG	1 cut(s)	826
Bst4CI	ACNGT	4 cut(s)	99, 559, 688, 751
Bst6I	CTCTTC	1 cut(s)	829
BstAUI	TGTACA	1 cut(s)	1035
BstBI	TTCGAA	1 cut(s)	513
BstC8I	GCNNGC	3 cut(s)	204, 861, 871
BstDEI	CTNAG	7 cut(s)	56, 139, 281, 803, 972, 997, 1173
BstF5I	GGATG	4 cut(s)	262, 448, 960, 1057
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	3 cut(s)	167, 316, 508
BstMAI	GTCTC	3 cut(s)	65, 565, 740
BstMBI	GATC	3 cut(s)	164, 313, 505
BstMWI	GCNNNNNNNGC	5 cut(s)	341, 401, 767, 1039, 1061
BstNI	CCWGG	1 cut(s)	826
BstSCI	CCNGG	1 cut(s)	824
BstSFI	CTRYAG	1 cut(s)	687
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	4 cut(s)	193, 529, 748, 1017
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
Bsu15I	ATCGAT	1 cut(s)	316
BsuRI	GGCC	5 cut(s)	693, 770, 873, 936, 1012
BsuTUI	ATCGAT	1 cut(s)	316
BtsCI	GGATG	4 cut(s)	262, 448, 960, 1057
BtsIMutI	CAGTG	1 cut(s)	1020
Cac8I	GCNNGC	3 cut(s)	204, 861, 871
CaiI	CAGNNNCTG	2 cut(s)	749, 1048
CciI	TCATGA	2 cut(s)	372, 927
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	869
Cfr13I	GGNCC	4 cut(s)	446, 769, 934, 1157
ClaI	ATCGAT	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	1036
CviAII	CATG	4 cut(s)	64, 373, 598, 928
CviQI	GTAC	1 cut(s)	1036
DdeI	CTNAG	7 cut(s)	56, 139, 281, 803, 972, 997, 1173
DpnI	GATC	3 cut(s)	166, 315, 507
DpnII	GATC	3 cut(s)	164, 313, 505
EaeI	YGGCCR	1 cut(s)	1010
Eam1104I	CTCTTC	1 cut(s)	829
EarI	CTCTTC	1 cut(s)	829
Eco130I	CCWWGG	2 cut(s)	83, 772
Eco147I	AGGCCT	1 cut(s)	693
Eco47I	GGWCC	2 cut(s)	446, 1157
EcoO109I	RGGNCCY	1 cut(s)	1157
EcoRII	CCWGG	1 cut(s)	824
EcoT14I	CCWWGG	2 cut(s)	83, 772
ErhI	CCWWGG	2 cut(s)	83, 772
FaeI	CATG	4 cut(s)	67, 376, 601, 931
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FaqI	GGGAC	2 cut(s)	15, 697
FatI	CATG	4 cut(s)	63, 372, 597, 927
FauNDI	CATATG	1 cut(s)	1138
Fnu4HI	GCNGC	5 cut(s)	207, 386, 543, 762, 1031
FokI	GGATG	4 cut(s)	269, 455, 967, 1064
Fsp4HI	GCNGC	5 cut(s)	207, 386, 543, 762, 1031
FspBI	CTAG	4 cut(s)	105, 437, 951, 1002
FspI	TGCGCA	1 cut(s)	153
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	5 cut(s)	207, 386, 543, 762, 1031
GsaI	CCCAGC	1 cut(s)	684
HaeIII	GGCC	5 cut(s)	693, 770, 873, 936, 1012
HapII	CCGG	2 cut(s)	707, 870
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	4 cut(s)	67, 376, 601, 931
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	4 cut(s)	58, 301, 728, 1045
HpaII	CCGG	2 cut(s)	707, 870
HphI	GGTGA	2 cut(s)	335, 916
Hpy166II	GTNNAC	1 cut(s)	754
Hpy188I	TCNGA	6 cut(s)	172, 282, 553, 806, 880, 988
Hpy188III	TCNNGA	6 cut(s)	373, 479, 633, 928, 1049, 1188
Hpy8I	GTNNAC	1 cut(s)	754
Hpy99I	CGWCG	1 cut(s)	393
HpyAV	CCTTC	5 cut(s)	417, 509, 598, 599, 925
HpyCH4III	ACNGT	4 cut(s)	99, 559, 688, 751
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	3 cut(s)	146, 420, 764
HpyF10VI	GCNNNNNNNGC	5 cut(s)	341, 401, 767, 1039, 1061
HpyF3I	CTNAG	7 cut(s)	56, 139, 281, 803, 972, 997, 1173
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	4 cut(s)	67, 376, 601, 931
HspAI	GCGC	1 cut(s)	152
KroI	GCCGGC	1 cut(s)	869
KroNI	GCCGGC	1 cut(s)	871
Kzo9I	GATC	3 cut(s)	164, 313, 505
Lsp1109I	GCAGC	4 cut(s)	193, 529, 748, 1017
LweI	GCATC	4 cut(s)	529, 811, 1031, 1042
MaeI	CTAG	4 cut(s)	105, 437, 951, 1002
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	904
MalI	GATC	3 cut(s)	166, 315, 507
MbiI	CCGCTC	2 cut(s)	385, 1148
MboI	GATC	3 cut(s)	164, 313, 505
MboII	GAAGA	4 cut(s)	5, 185, 830, 846
MfeI	CAATTG	1 cut(s)	286
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	3 cut(s)	104, 198, 365
MlsI	TGGCCA	1 cut(s)	1012
MluCI	AATT	5 cut(s)	72, 286, 405, 1078, 1166
MluNI	TGGCCA	1 cut(s)	1012
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	793
MnlI	CCTC	6 cut(s)	81, 319, 671, 824, 961, 1171
Mox20I	TGGCCA	1 cut(s)	1012
MroNI	GCCGGC	1 cut(s)	869
MroXI	GAANNNNTTC	1 cut(s)	923
MscI	TGGCCA	1 cut(s)	1012
MseI	TTAA	3 cut(s)	500, 623, 1169
Msp20I	TGGCCA	1 cut(s)	1012
MspI	CCGG	2 cut(s)	707, 870
MspR9I	CCNGG	1 cut(s)	826
MunI	CAATTG	1 cut(s)	286
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	826
MwoI	GCNNNNNNNGC	5 cut(s)	341, 401, 767, 1039, 1061
NaeI	GCCGGC	1 cut(s)	871
NdeI	CATATG	1 cut(s)	1138
NdeII	GATC	3 cut(s)	164, 313, 505
NgoMIV	GCCGGC	1 cut(s)	869
NlaIII	CATG	4 cut(s)	67, 376, 601, 931
NlaIV	GGNNCC	1 cut(s)	1159
NmuCI	GTSAC	1 cut(s)	904
NsbI	TGCGCA	1 cut(s)	153
NspV	TTCGAA	1 cut(s)	513
PagI	TCATGA	2 cut(s)	372, 927
PceI	AGGCCT	1 cut(s)	693
PctI	GAATGC	1 cut(s)	46
PdiI	GCCGGC	1 cut(s)	871
PdmI	GAANNNNTTC	1 cut(s)	923
PfeI	GAWTC	3 cut(s)	301, 728, 1045
PkrI	GCNGC	5 cut(s)	208, 387, 544, 763, 1032
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PpuMI	RGGWCCY	1 cut(s)	1157
Psp5II	RGGWCCY	1 cut(s)	1157
Psp6I	CCWGG	1 cut(s)	824
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	824
PspN4I	GGNNCC	1 cut(s)	1159
PspPI	GGNCC	4 cut(s)	446, 769, 934, 1157
PspPPI	RGGWCCY	1 cut(s)	1157
PstNI	CAGNNNCTG	2 cut(s)	749, 1048
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	1 cut(s)	1037
RsaNI	GTAC	1 cut(s)	1036
SaqAI	TTAA	3 cut(s)	500, 623, 1169
SatI	GCNGC	5 cut(s)	207, 386, 543, 762, 1031
Sau3AI	GATC	3 cut(s)	164, 313, 505
Sau96I	GGNCC	4 cut(s)	446, 769, 934, 1157
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	826
SduI	GDGCHC	3 cut(s)	104, 198, 365
SfaNI	GCATC	4 cut(s)	529, 811, 1031, 1042
SfcI	CTRYAG	1 cut(s)	687
SfuI	TTCGAA	1 cut(s)	513
SinI	GGWCC	2 cut(s)	446, 1157
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	5 cut(s)	72, 286, 405, 1078, 1166
SseBI	AGGCCT	1 cut(s)	693
SsiI	CCGC	2 cut(s)	385, 1148
SspMI	CTAG	4 cut(s)	105, 437, 951, 1002
StuI	AGGCCT	1 cut(s)	693
StyD4I	CCNGG	1 cut(s)	824
StyI	CCWWGG	2 cut(s)	83, 772
TaaI	ACNGT	4 cut(s)	99, 559, 688, 751
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	3 cut(s)	316, 513, 1187
TasI	AATT	5 cut(s)	72, 286, 405, 1078, 1166
TatI	WGTACW	1 cut(s)	1035
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	3 cut(s)	301, 728, 1045
Tru1I	TTAA	3 cut(s)	500, 623, 1169
Tru9I	TTAA	3 cut(s)	500, 623, 1169
TscAI	CASTG	1 cut(s)	1020
TseFI	GTSAC	1 cut(s)	904
TseI	GCWGC	4 cut(s)	206, 542, 761, 1030
Tsp45I	GTSAC	1 cut(s)	904
TspDTI	ATGAA	6 cut(s)	201, 273, 447, 666, 916, 944
TspGWI	ACGGA	3 cut(s)	277, 513, 518
TspRI	CASTG	1 cut(s)	1020
VpaK11BI	GGWCC	2 cut(s)	446, 1157
XmnI	GAANNNNTTC	1 cut(s)	923
XspI	CTAG	4 cut(s)	105, 437, 951, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.