AT5G17240

SET domain group 40

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
5666823 .. 5668907
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17240.1

Sequence Viewer

Length: 1476 bp
ATGGACTTAGAACACCAAACCATGGAGACGTTCCTGCGATGGGCAGCAGAGATTGGCATTTCAGATTCTATTGATTCTTCTCGATTTCGCGATTCGTGTCTTGGACATTCTCTTTCCGTCTCCGACTTCCCTGACGCCGGCGGGAGAGGTTTGGGAGCTGCTCGTGAGCTCAAGAAAGGAGAATTGGTTTTGAAAGTCCCCAGAAAAGCCTTGATGACTACAGAATCCATAATTGCTAAAGATCTAAAATTGAGCGATGCTGTTAATCTTCACAATTCACTTTCTTCGACTCAGATACTGAGTGTATGCTTATTGTATGAAATGAGCAAGGAGAAGAAGTCTTTTTGGTATCCATACTTGTTCCATATACCTCGTGACTATGATCTCTTGGCTACATTTGGGAATTTCGAGAAGCAAGCTTTACAAGTTGAAGATGCTGTTTGGGCTACAGAAAAAGCCACAGCCAAGTGTCAGTCTGAGTGGAAAGAAGCTGGTTCGTTAATGAAGGAGTTAGAGCTGAAGCCTAAGTTTCGGAGTTTCCAAGCATGGCTATGGGCTTCTGCAACGATATCTTCACGAACACTGCATGTACCATGGGATAGTGCTGGGTGTTTGTGTCCTGTAGGGGACTTGTTCAACTACGATGCTCCTGGAGATTATTCGAATACCCCACAAGGTCCTGAGAGTGCTAATAATGTAGAGGAAGCAGGACTTGTTGTTGAGACACACTCTGAAAGGCTCACAGATGGTGGATTCGAGGAAGATGTCAATGCTTACTGTCTTTATGCAAGAAGGAATTATCAGCTAGGAGAACAGGTTCTTCTATGTTATGGGACTTACACGAATCTAGAGCTTCTTGAGCACTATGGGTTTATGTTAGAAGAGAACTCAAATGACAAGGTCTTCATTCCTCTAGAAACCAGCCTATTTTCTCTAGCTTCTTCATGGCCTAAAGATTCTTTATACATTCATCAAGACGGTAAGCTGTCTTTTGCGCTGATATCCACGTTGAGACTGTGGCTGATCCCACAGAGCCAGCGTGACAAGTCAGTTATGCGCCTTGTTTACGCTGGATCTCAGATATCTGTGAAGAATGAGATTCTTGTCATGAAGTGGATGTCAGAGAAATGTGGAAGTGTTTTAAGGGATCTGCCAACTTCTGTCACAGAGGACACTGTGCTTCTTCATAACATTGACAAACTCCAAGATCCAGAATTGCGTTTGGAGCAGAAAGAAACAGAAGCTTTTGGCAGCGAAGTACGTGCTTTTCTTGATGCAAATTGTTTGTGGGATGTCACTGTATTATCTGGGAAACCTATAGAATTTTCCAGGAAAACTAGCAGGATGCTGAGCAAATGGAGATGGTCTGTGCAGTGGAGGCTAAGCTACAAGAGAACTCTAGCAGATTGCATCTCTTATTGTAATGAGAAAATGAATAATCTCTTAGGTACCCAAGATAGGCTTAGAGATTTGTAA

Protein Analysis

491

Amino Acids

55.87

Weight (kDa)

5.35

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009980)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1448
AccB1I GGYRCC 1 cut(s) 1448
AccB7I CCANNNNNTGG 1 cut(s) 22
AccII CGCG 1 cut(s) 90
AciI CCGC 1 cut(s) 141
AclWI GGATC 4 cut(s) 1018, 1081, 1155, 1202
AcsI RAATTY 2 cut(s) 403, 1322
AcuI CTGAAG 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 3 cut(s) 591, 1260, 1450
AfiI CCNNNNNNNGG 4 cut(s) 22, 40, 137, 1458
AgsI TTSAA 3 cut(s) 193, 431, 637
AjnI CCWGG 2 cut(s) 649, 1328
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AloI GAACNNNNNNTCC 2 cut(s) 801, 833
Alw21I GWGCWC 2 cut(s) 171, 864
Alw26I GTCTC 4 cut(s) 20, 124, 716, 1006
AlwI GGATC 4 cut(s) 1018, 1081, 1155, 1202
AlwNI CAGNNNCTG 1 cut(s) 298
AoxI GGCC 1 cut(s) 947
ApeKI GCWGC 3 cut(s) 44, 158, 1251
ApoI RAATTY 2 cut(s) 403, 1322
Asp700I GAANNNNTTC 1 cut(s) 816
Asp718I GGTACC 1 cut(s) 1448
AspLEI GCGC 2 cut(s) 997, 1059
AspS9I GGNCC 1 cut(s) 677
AsuII TTCGAA 1 cut(s) 662
AvaII GGWCC 1 cut(s) 677
BanI GGYRCC 1 cut(s) 1448
BanII GRGCYC 1 cut(s) 171
BauI CACGAG 2 cut(s) 162, 372
BbsI GAAGAC 1 cut(s) 895
Bbv12I GWGCWC 2 cut(s) 171, 864
BbvI GCAGC 3 cut(s) 56, 145, 1263
BccI CCATC 3 cut(s) 33, 740, 1356
BcgI CGANNNNNNTGC 2 cut(s) 1244, 1278
BciT130I CCWGG 2 cut(s) 651, 1330
BciVI GTATCC 1 cut(s) 360
BcoDI GTCTC 4 cut(s) 20, 124, 716, 1006
BfaI CTAG 6 cut(s) 806, 848, 914, 935, 1338, 1400
BfmI CTRYAG 4 cut(s) 219, 447, 621, 1317
BfuI GTATCC 1 cut(s) 360
BglII AGATCT 1 cut(s) 241
BisI GCNGC 3 cut(s) 45, 159, 1252
BlpI GCTNAGC 2 cut(s) 1349, 1382
BlsI GCNGC 3 cut(s) 46, 160, 1253
Bme1390I CCNGG 2 cut(s) 651, 1330
Bme18I GGWCC 1 cut(s) 677
BmgT120I GGNCC 1 cut(s) 677
BmiI GGNNCC 1 cut(s) 1450
BmrFI CCNGG 2 cut(s) 651, 1330
BmsI GCATC 6 cut(s) 247, 424, 634, 1264, 1335, 1419
BpiI GAAGAC 1 cut(s) 895
BplI GAGNNNNNCTC 2 cut(s) 713, 745
BpmI CTGGAG 1 cut(s) 672
Bpu1102I GCTNAGC 2 cut(s) 1349, 1382
Bpu14I TTCGAA 1 cut(s) 662
BpuEI CTTGAG 2 cut(s) 155, 878
BsaAI YACGTR 1 cut(s) 1262
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 21, 593
BsaXI ACNNNNNCTCC 6 cut(s) 171, 201, 323, 353, 801, 831
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 40, 137, 1458
Bse118I RCCGGY 1 cut(s) 137
BseBI CCWGG 2 cut(s) 651, 1330
BseDI CCNNGG 2 cut(s) 21, 593
BseGI GGATG 3 cut(s) 1122, 1297, 1350
BseLI CCNNNNNNNGG 4 cut(s) 22, 40, 137, 1458
BseMII CTCAG 6 cut(s) 290, 305, 468, 672, 1091, 1340
BseXI GCAGC 3 cut(s) 56, 145, 1263
BseYI CCCAGC 1 cut(s) 605
BsgI GTGCAG 1 cut(s) 1391
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 949
BshNI GGYRCC 1 cut(s) 1448
BsiHKAI GWGCWC 2 cut(s) 171, 864
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 3 cut(s) 182, 641, 847
BslI CCNNNNNNNGG 4 cut(s) 22, 40, 137, 1458
BsmAI GTCTC 4 cut(s) 20, 124, 716, 1006
BsmBI CGTCTC 2 cut(s) 20, 124
BsmFI GGGAC 3 cut(s) 182, 641, 847
BsnI GGCC 1 cut(s) 949
Bsp119I TTCGAA 1 cut(s) 662
Bsp1286I GDGCHC 2 cut(s) 171, 864
Bsp143I GATC 6 cut(s) 241, 382, 1023, 1073, 1147, 1207
Bsp1720I GCTNAGC 2 cut(s) 1349, 1382
Bsp19I CCATGG 2 cut(s) 21, 593
Bsp68I TCGCGA 1 cut(s) 90
BspACI CCGC 1 cut(s) 141
BspANI GGCC 1 cut(s) 949
BspCNI CTCAG 6 cut(s) 291, 304, 469, 673, 1090, 1341
BspFNI CGCG 1 cut(s) 90
BspHI TCATGA 1 cut(s) 1107
BspLI GGNNCC 1 cut(s) 1450
BspPI GGATC 4 cut(s) 1018, 1081, 1155, 1202
BspT104I TTCGAA 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 1448
BsrFI RCCGGY 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 21, 593
BssMI GATC 6 cut(s) 241, 382, 1023, 1073, 1147, 1207
BssNI GRCGYC 1 cut(s) 135
BssSI CACGAG 2 cut(s) 162, 372
BssT1I CCWWGG 2 cut(s) 21, 593
Bst2BI CACGAG 2 cut(s) 162, 372
Bst2UI CCWGG 2 cut(s) 651, 1330
Bst4CI ACNGT 5 cut(s) 779, 980, 1017, 1177, 1300
Bst6I CTCTTC 1 cut(s) 876
BstACI GRCGYC 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 1262
BstBI TTCGAA 1 cut(s) 662
BstC8I GCNNGC 3 cut(s) 139, 417, 1037
BstDSI CCRYGG 2 cut(s) 21, 593
BstF5I GGATG 3 cut(s) 1122, 1297, 1350
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 2 cut(s) 997, 1059
BstKTI GATC 6 cut(s) 244, 385, 1026, 1076, 1150, 1210
BstMAI GTCTC 4 cut(s) 20, 124, 716, 1006
BstMBI GATC 6 cut(s) 241, 382, 1023, 1073, 1147, 1207
BstMWI GCNNNNNNNGC 4 cut(s) 443, 859, 1225, 1378
BstNI CCWGG 2 cut(s) 651, 1330
BstNSI RCATGY 1 cut(s) 590
BstSCI CCNGG 2 cut(s) 649, 1328
BstSFI CTRYAG 4 cut(s) 219, 447, 621, 1317
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 3 cut(s) 56, 145, 1263
BstV2I GAAGAC 1 cut(s) 895
BstX2I RGATCY 4 cut(s) 241, 1073, 1147, 1207
BstYI RGATCY 4 cut(s) 241, 1073, 1147, 1207
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 1 cut(s) 949
BtgI CCRYGG 2 cut(s) 21, 593
BtgZI GCGATG 2 cut(s) 52, 270
BtsCI GGATG 3 cut(s) 1122, 1297, 1350
BtsI GCAGTG 2 cut(s) 581, 1379
BtsIMutI CAGTG 4 cut(s) 581, 1173, 1296, 1379
BtuMI TCGCGA 1 cut(s) 90
Cac8I GCNNGC 3 cut(s) 139, 417, 1037
CaiI CAGNNNCTG 1 cut(s) 298
CciI TCATGA 1 cut(s) 1107
CfoI GCGC 2 cut(s) 997, 1059
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 677
CseI GACGC 1 cut(s) 143
Csp6I GTAC 3 cut(s) 590, 1259, 1449
CviAII CATG 6 cut(s) 22, 546, 587, 594, 945, 1108
CviQI GTAC 3 cut(s) 590, 1259, 1449
DpnI GATC 6 cut(s) 243, 384, 1025, 1075, 1149, 1209
DpnII GATC 6 cut(s) 241, 382, 1023, 1073, 1147, 1207
Eam1104I CTCTTC 1 cut(s) 876
EarI CTCTTC 1 cut(s) 876
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 2 cut(s) 21, 593
Eco24I GRGCYC 1 cut(s) 171
Eco32I GATATC 3 cut(s) 570, 1002, 1083
Eco47I GGWCC 1 cut(s) 677
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 539
EcoICRI GAGCTC 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 677
EcoRII CCWGG 2 cut(s) 649, 1328
EcoRV GATATC 3 cut(s) 570, 1002, 1083
EcoT14I CCWWGG 2 cut(s) 21, 593
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 2 cut(s) 21, 593
Esp3I CGTCTC 2 cut(s) 20, 124
FaeI CATG 6 cut(s) 25, 549, 590, 597, 948, 1111
FalI AAGNNNNNCTT 3 cut(s) 696, 728, 1446
FaqI GGGAC 3 cut(s) 182, 641, 847
FatI CATG 6 cut(s) 21, 545, 586, 593, 944, 1107
FauI CCCGC 1 cut(s) 134
Fnu4HI GCNGC 3 cut(s) 45, 159, 1252
FokI GGATG 3 cut(s) 1129, 1304, 1357
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 3 cut(s) 45, 159, 1252
FspBI CTAG 6 cut(s) 806, 848, 914, 935, 1338, 1400
GlaI GCGC 2 cut(s) 996, 1058
GluI GCNGC 3 cut(s) 45, 159, 1252
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 1 cut(s) 949
HapII CCGG 1 cut(s) 138
HgaI GACGC 1 cut(s) 143
HhaI GCGC 2 cut(s) 997, 1059
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 6 cut(s) 25, 549, 590, 597, 948, 1111
Hin6I GCGC 2 cut(s) 995, 1057
HinP1I GCGC 2 cut(s) 995, 1057
HindIII AAGCTT 2 cut(s) 417, 1242
HinfI GANTC 9 cut(s) 65, 74, 92, 224, 289, 753, 844, 956, 1099
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 1 cut(s) 1066
Hpy188I TCNGA 8 cut(s) 64, 124, 294, 478, 534, 733, 1080, 1123
Hpy8I GTNNAC 1 cut(s) 1066
HpyAV CCTTC 2 cut(s) 499, 786
HpyCH4III ACNGT 5 cut(s) 779, 980, 1017, 1177, 1300
HpyCH4IV ACGT 3 cut(s) 29, 1007, 1261
HpyCH4V TGCA 6 cut(s) 563, 586, 788, 1277, 1372, 1410
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 859, 1225, 1378
HpySE526I ACGT 3 cut(s) 29, 1007, 1261
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 6 cut(s) 25, 549, 590, 597, 948, 1111
HspAI GCGC 2 cut(s) 995, 1057
KpnI GGTACC 1 cut(s) 1452
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Kzo9I GATC 6 cut(s) 241, 382, 1023, 1073, 1147, 1207
LmnI GCTCC 3 cut(s) 155, 652, 1225
Lsp1109I GCAGC 3 cut(s) 56, 145, 1263
LweI GCATC 6 cut(s) 247, 424, 634, 1264, 1335, 1419
MaeI CTAG 6 cut(s) 806, 848, 914, 935, 1338, 1400
MaeII ACGT 3 cut(s) 29, 1007, 1261
MaeIII GTNAC 4 cut(s) 374, 1040, 1162, 1294
MalI GATC 6 cut(s) 243, 384, 1025, 1075, 1149, 1209
MboI GATC 6 cut(s) 241, 382, 1023, 1073, 1147, 1207
MflI RGATCY 4 cut(s) 241, 1073, 1147, 1207
MhlI GDGCHC 2 cut(s) 171, 864
MluCI AATT 9 cut(s) 182, 231, 248, 274, 403, 796, 1214, 1279, 1322
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 7 cut(s) 140, 381, 694, 751, 921, 1162, 1371
MreI CGCCGGCG 1 cut(s) 137
MroNI GCCGGC 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 816
MseI TTAA 3 cut(s) 264, 500, 1142
MslI CAYNNNNRTG 1 cut(s) 550
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 2 cut(s) 651, 1330
MvaI CCWGG 2 cut(s) 651, 1330
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 4 cut(s) 443, 859, 1225, 1378
NaeI GCCGGC 1 cut(s) 139
NcoI CCATGG 2 cut(s) 21, 593
NdeII GATC 6 cut(s) 241, 382, 1023, 1073, 1147, 1207
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 6 cut(s) 25, 549, 590, 597, 948, 1111
NlaIV GGNNCC 1 cut(s) 1450
NmuCI GTSAC 4 cut(s) 374, 1040, 1162, 1294
NruI TCGCGA 1 cut(s) 90
NspI RCATGY 1 cut(s) 590
NspV TTCGAA 1 cut(s) 662
PagI TCATGA 1 cut(s) 1107
PdiI GCCGGC 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 816
PfeI GAWTC 8 cut(s) 65, 74, 92, 224, 753, 844, 956, 1099
PflFI GACNNNGTC 1 cut(s) 899
PflMI CCANNNNNTGG 1 cut(s) 22
PfoI TCCNGGA 2 cut(s) 649, 1328
PkrI GCNGC 3 cut(s) 46, 160, 1253
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Ppu21I YACGTR 1 cut(s) 1262
PpuMI RGGWCCY 1 cut(s) 677
Psp124BI GAGCTC 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 677
Psp6I CCWGG 2 cut(s) 649, 1328
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 2 cut(s) 649, 1328
PspN4I GGNNCC 1 cut(s) 1450
PspPI GGNCC 1 cut(s) 677
PspPPI RGGWCCY 1 cut(s) 677
PstNI CAGNNNCTG 1 cut(s) 298
PsuI RGATCY 4 cut(s) 241, 1073, 1147, 1207
PsyI GACNNNGTC 1 cut(s) 899
RruI TCGCGA 1 cut(s) 90
RsaI GTAC 3 cut(s) 591, 1260, 1450
RsaNI GTAC 3 cut(s) 590, 1259, 1449
RseI CAYNNNNRTG 1 cut(s) 550
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 3 cut(s) 264, 500, 1142
SatI GCNGC 3 cut(s) 45, 159, 1252
Sau3AI GATC 6 cut(s) 241, 382, 1023, 1073, 1147, 1207
Sau96I GGNCC 1 cut(s) 677
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 2 cut(s) 651, 1330
SduI GDGCHC 2 cut(s) 171, 864
SfaNI GCATC 6 cut(s) 247, 424, 634, 1264, 1335, 1419
SfcI CTRYAG 4 cut(s) 219, 447, 621, 1317
SfuI TTCGAA 1 cut(s) 662
SgrAI CRCCGGYG 1 cut(s) 137
SinI GGWCC 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 550
SmlI CTYRAG 2 cut(s) 170, 857
SmoI CTYRAG 2 cut(s) 170, 857
Sse9I AATT 9 cut(s) 182, 231, 248, 274, 403, 796, 1214, 1279, 1322
SsiI CCGC 1 cut(s) 141
SspMI CTAG 6 cut(s) 806, 848, 914, 935, 1338, 1400
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 649, 1328
StyI CCWWGG 2 cut(s) 21, 593
TaaI ACNGT 5 cut(s) 779, 980, 1017, 1177, 1300
TaiI ACGT 3 cut(s) 32, 1010, 1264
TaqI TCGA 5 cut(s) 82, 287, 408, 662, 756
TasI AATT 9 cut(s) 182, 231, 248, 274, 403, 796, 1214, 1279, 1322
TfiI GAWTC 8 cut(s) 65, 74, 92, 224, 753, 844, 956, 1099
Tru1I TTAA 3 cut(s) 264, 500, 1142
Tru9I TTAA 3 cut(s) 264, 500, 1142
TscAI CASTG 4 cut(s) 588, 1180, 1303, 1379
TseFI GTSAC 4 cut(s) 374, 1040, 1162, 1294
TseI GCWGC 3 cut(s) 44, 158, 1251
Tsp45I GTSAC 4 cut(s) 374, 1040, 1162, 1294
TspDTI ATGAA 8 cut(s) 333, 518, 895, 933, 959, 1124, 1175, 1448
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 4 cut(s) 588, 1180, 1303, 1379
Tth111I GACNNNGTC 1 cut(s) 899
Van91I CCANNNNNTGG 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 677
XapI RAATTY 2 cut(s) 403, 1322
XbaI TCTAGA 2 cut(s) 847, 913
XceI RCATGY 1 cut(s) 590
XmnI GAANNNNTTC 1 cut(s) 816
XspI CTAG 6 cut(s) 806, 848, 914, 935, 1338, 1400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.