Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009980

Physical Location & Seq

Genomic Coordinates Reverse (-)

34813171 .. 34819174

Gene Structure 6004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG322900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGGAGCAAGAAGAAGGCAACCTCGAAAGGCTTCTGAAATGGGCGGCGGAGTGTGGGATATCAGACTCAAAATGTCGCGGGCTTTCGTGTTTGGGCCACTCTGTCGTCGTCTCCTACTTCCATGGCGCAGGCGGGAGAGGTTTGGGCGCTGCTCGTGATCTTGAAAAAGGAGAGTTAGTTCTCAAAGTTCCAAAATGGGCTCTGATTACAAGGGAAAGTCTGTTGTTGAAAGATGATCAACTCTCTGTTGCTGTCAATGCCCATAGCTCTCTCTCCCCTACCCAGACATTGACGGTTTGCTTACTGTATGAAATGGGTAAAGGGAAGACTTCATGGTGGCACCCTTACCTGATCAATTTGCCGCGCAGTTATGACATTATAGCAACATTTGGTGAATTTGAGAAGCAAGCTTTGCAGGTGGACGATGCTATCTGGGCTGCTGATAGGGCCATTTCCAAGGCTCAGTTTGAGTGGAAAGAGACCAATGCGCTCATGGAACAACTTAAGCTCAAGCCGCAACTTCGAACATTTAAGGCATGGCTTTGGGCTTCTGCAACTGTATCCTCACGGACGATGCATATACCATGGGATGGAGCTGGGTGTTTATGTCCTGTGGGAGACTTATTTAATTATTTTGCACCTGTAGAAGAATCTGATTTTGAAAATATGGAGCATAGAACACATGACTTGGCCTTACAGGATATCTCTACAGTGAACGAGGAAACTTCGTGTATTCTAGATATGGAGCAGCTTGATTCTGATTCGGGAAGATTAACTGATGGCAGGTTTGAGAACGATGTTGGGGCATATTGCTTCTATGCGAAGAAAAGTTATAGAAAAGGAGAGCAGGTGCTTTTGAGCTATGGAACATACACAAATTTGGAGCTTCTTGAGCACTATGGCTTTCTCTTAAATGAAAATCCAAATGACAAAGTTTTTGTTCCCTTAGAACCAGAAATATATTCCTCTTGTTCATGGCCTAAGGAGTCCCTATATATCCATCAAAGTGGAAAGCCGTCTTTTGCTCTACTTTCGGCTCTGCGATTATGGGCAACCCCAGCAAACCGGCGAAGATCTGTTGGACACCTTGCTTATTCAGGGCTTCAACTCTCAGTTGAAAATGAGGTATTTGTTATGAGATGGATTTCAAACAAGTGTAACAGTACTATGAAGAATATGCCAACAACTTTTGAAGAAGATAGTCTTCTATTAAGTGTCATTGACAAAATCCAAAATGTTAATGCCCCTTTGGAGTTTGCAAATGTTTCATCTGTATCAACAGATGAGATTTGTACTTTTAGGGCTAATGTTTTGAAGAAGGGAGAAACAGATTCCAAAACACTTGTGTCAGGGAAAATGCAGCGGTCAAGGGAGAGGTGGAAATTAGCTGTTGAGTGGAGGCTTGGTTATAAGAAAATTCTAGTTGATTGTATTTCTTTCTGTGATGAAATGATACGTGTTCTTTGTTCTCAAATATCTCATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

495

Amino Acids

56.0

Weight (kDa)

5.68

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rubis-subs-bind	PF09273	336 - 474	1e-05	Rubisco LSMT substrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17240 AT5G17240
fragaria_vesca	FvH4_1g27420
malus_domestica	MD07G1015500.v1.1 MD17G1287300.v1.1
prunus_persica	Prupe.3G014000_v2.0.a1
pyrus_communis	pycom07g01180 pycom07g01780 pycom07g01830 pycom07g01860
rosa_chinensis	RchiOBHm_Chr3g0488621
rosa_laevigata	RLG00000022939
rosa_multiflora	Rmu_sc0005363.1_g000050
rosa_roxburghii	Rroxscaffold_6G00394090
rosa_rugosa	Rorug03G0239700 Rorug03G0239800
rosa_samantha	Rh3AG288600 Rh3BG325300 Rh3CG322900 Rh3DG321600
rosa_wichuraiana	Rw3G025540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1410
AarI	CACCTGC	2 cut(s)	406, 838
Acc36I	ACCTGC	3 cut(s)	406, 774, 838
AccB1I	GGYRCC	1 cut(s)	339
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccII	CGCG	2 cut(s)	78, 364
AciI	CCGC	7 cut(s)	44, 47, 78, 132, 362, 515, 1363
AcsI	RAATTY	3 cut(s)	395, 877, 1416
AfaI	GTAC	2 cut(s)	1165, 1294
AfiI	CCNNNNNNNGG	1 cut(s)	590
AflII	CTTAAG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	1456
AgsI	TTSAA	8 cut(s)	164, 229, 662, 1106, 1118, 1149, 1193, 1315
AloI	GAACNNNNNNTCC	2 cut(s)	162, 194
AluBI	AGCT	8 cut(s)	267, 410, 508, 596, 751, 861, 886, 1388
AluI	AGCT	8 cut(s)	267, 410, 508, 596, 751, 861, 886, 1388
Alw21I	GWGCWC	1 cut(s)	897
Alw26I	GTCTC	3 cut(s)	115, 473, 612
AoxI	GGCC	4 cut(s)	94, 447, 690, 977
ApeKI	GCWGC	4 cut(s)	149, 437, 748, 1360
ApoI	RAATTY	3 cut(s)	395, 877, 1416
ArsI	GACNNNNNNTTYG	2 cut(s)	920, 952
Asp700I	GAANNNNTTC	1 cut(s)	30
AspLEI	GCGC	4 cut(s)	128, 149, 366, 490
AspS9I	GGNCC	2 cut(s)	94, 447
AsuHPI	GGTGA	1 cut(s)	404
AsuII	TTCGAA	1 cut(s)	523
AxyI	CCTNAGG	1 cut(s)	981
BanI	GGYRCC	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	202
BauI	CACGAG	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	332, 1196
Bbv12I	GWGCWC	1 cut(s)	897
BbvI	GCAGC	4 cut(s)	136, 424, 760, 1372
BccI	CCATC	4 cut(s)	584, 773, 1008, 1134
BceAI	ACGGC	1 cut(s)	1000
BciVI	GTATCC	1 cut(s)	571
BclI	TGATCA	2 cut(s)	235, 351
BcoDI	GTCTC	3 cut(s)	115, 473, 612
BfaI	CTAG	2 cut(s)	737, 1421
BfmI	CTRYAG	2 cut(s)	642, 708
BfoI	RGCGCY	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	503
BfuAI	ACCTGC	3 cut(s)	406, 774, 838
BfuI	GTATCC	1 cut(s)	571
BglII	AGATCT	1 cut(s)	1073
BisI	GCNGC	7 cut(s)	45, 150, 362, 438, 515, 749, 1361
BlsI	GCNGC	7 cut(s)	46, 151, 363, 439, 516, 750, 1362
BmcAI	AGTACT	1 cut(s)	1165
BmgT120I	GGNCC	2 cut(s)	94, 447
BmiI	GGNNCC	1 cut(s)	341
BmsI	GCATC	2 cut(s)	415, 564
BpiI	GAAGAC	2 cut(s)	332, 1196
Bpu14I	TTCGAA	1 cut(s)	523
BpuEI	CTTGAG	2 cut(s)	494, 911
BsaAI	YACGTR	1 cut(s)	1457
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	121, 456, 584
BsaXI	ACNNNNNCTCC	6 cut(s)	162, 192, 834, 864, 1390, 1420
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse118I	RCCGGY	1 cut(s)	1065
Bse21I	CCTNAGG	1 cut(s)	981
BseDI	CCNNGG	3 cut(s)	121, 456, 584
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	2 cut(s)	476, 1125
BseXI	GCAGC	4 cut(s)	136, 424, 760, 1372
BseYI	CCCAGC	2 cut(s)	596, 1057
Bsh1236I	CGCG	2 cut(s)	78, 364
BshFI	GGCC	4 cut(s)	96, 449, 692, 979
BshNI	GGYRCC	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	897
BsiSI	CCGG	1 cut(s)	1066
BslFI	GGGAC	1 cut(s)	973
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	3 cut(s)	115, 473, 612
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	973
BsnI	GGCC	4 cut(s)	96, 449, 692, 979
Bso31I	GGTCTC	1 cut(s)	473
Bsp119I	TTCGAA	1 cut(s)	523
Bsp1286I	GDGCHC	2 cut(s)	202, 897
Bsp143I	GATC	4 cut(s)	157, 235, 351, 1073
Bsp19I	CCATGG	2 cut(s)	121, 584
BspACI	CCGC	7 cut(s)	44, 47, 78, 132, 362, 515, 1363
BspANI	GGCC	4 cut(s)	96, 449, 692, 979
BspCNI	CTCAG	2 cut(s)	475, 1124
BspFNI	CGCG	2 cut(s)	78, 364
BspLI	GGNNCC	1 cut(s)	341
BspMI	ACCTGC	3 cut(s)	406, 774, 838
BspT104I	TTCGAA	1 cut(s)	523
BspT107I	GGYRCC	1 cut(s)	339
BspTI	CTTAAG	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	473
BsrFI	RCCGGY	1 cut(s)	1065
BssAI	RCCGGY	1 cut(s)	1065
BssECI	CCNNGG	3 cut(s)	121, 456, 584
BssMI	GATC	4 cut(s)	157, 235, 351, 1073
BssSI	CACGAG	1 cut(s)	153
BssT1I	CCWWGG	3 cut(s)	121, 456, 584
Bst2BI	CACGAG	1 cut(s)	153
Bst4CI	ACNGT	5 cut(s)	295, 306, 559, 712, 1163
BstAFI	CTTAAG	1 cut(s)	503
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	1457
BstBI	TTCGAA	1 cut(s)	523
BstC8I	GCNNGC	3 cut(s)	80, 130, 408
BstDEI	CTNAG	4 cut(s)	462, 946, 981, 1111
BstDSI	CCRYGG	2 cut(s)	121, 584
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	2 cut(s)	78, 364
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	4 cut(s)	128, 149, 366, 490
BstKTI	GATC	4 cut(s)	160, 238, 354, 1076
BstMAI	GTCTC	3 cut(s)	115, 473, 612
BstMBI	GATC	4 cut(s)	157, 235, 351, 1073
BstMWI	GCNNNNNNNGC	7 cut(s)	257, 412, 434, 446, 514, 892, 1058
BstSFI	CTRYAG	2 cut(s)	642, 708
BstUI	CGCG	2 cut(s)	78, 364
BstV1I	GCAGC	4 cut(s)	136, 424, 760, 1372
BstV2I	GAAGAC	2 cut(s)	332, 1196
BstX2I	RGATCY	1 cut(s)	1073
BstXI	CCANNNNNNTGG	1 cut(s)	1007
BstYI	RGATCY	1 cut(s)	1073
Bsu36I	CCTNAGG	1 cut(s)	981
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	4 cut(s)	96, 449, 692, 979
BtgI	CCRYGG	2 cut(s)	121, 584
BtsCI	GGATG	1 cut(s)	595
BtsIMutI	CAGTG	1 cut(s)	717
BveI	ACCTGC	3 cut(s)	406, 774, 838
Cac8I	GCNNGC	3 cut(s)	80, 130, 408
CfoI	GCGC	4 cut(s)	128, 149, 366, 490
Cfr10I	RCCGGY	1 cut(s)	1065
Cfr13I	GGNCC	2 cut(s)	94, 447
Csp6I	GTAC	2 cut(s)	1164, 1293
CviAII	CATG	7 cut(s)	122, 333, 493, 537, 585, 683, 975
CviQI	GTAC	2 cut(s)	1164, 1293
DdeI	CTNAG	4 cut(s)	462, 946, 981, 1111
DpnI	GATC	4 cut(s)	159, 237, 353, 1075
DpnII	GATC	4 cut(s)	157, 235, 351, 1073
EciI	GGCGGA	1 cut(s)	62
Eco130I	CCWWGG	3 cut(s)	121, 456, 584
Eco24I	GRGCYC	1 cut(s)	202
Eco31I	GGTCTC	1 cut(s)	473
Eco32I	GATATC	2 cut(s)	60, 703
Eco81I	CCTNAGG	1 cut(s)	981
EcoRV	GATATC	2 cut(s)	60, 703
EcoT14I	CCWWGG	3 cut(s)	121, 456, 584
EcoT22I	ATGCAT	1 cut(s)	579
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	3 cut(s)	121, 456, 584
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	7 cut(s)	125, 336, 496, 540, 588, 686, 978
FalI	AAGNNNNNCTT	2 cut(s)	1188, 1220
FaqI	GGGAC	1 cut(s)	973
FatI	CATG	7 cut(s)	121, 332, 492, 536, 584, 682, 974
FauI	CCCGC	2 cut(s)	71, 125
FbaI	TGATCA	2 cut(s)	235, 351
Fnu4HI	GCNGC	7 cut(s)	45, 150, 362, 438, 515, 749, 1361
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	7 cut(s)	45, 150, 362, 438, 515, 749, 1361
FspBI	CTAG	2 cut(s)	737, 1421
GlaI	GCGC	4 cut(s)	127, 148, 365, 489
GluI	GCNGC	7 cut(s)	45, 150, 362, 438, 515, 749, 1361
GsaI	CCCAGC	2 cut(s)	600, 1061
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	4 cut(s)	96, 449, 692, 979
HapII	CCGG	1 cut(s)	1066
HhaI	GCGC	4 cut(s)	128, 149, 366, 490
Hin1II	CATG	7 cut(s)	125, 336, 496, 540, 588, 686, 978
Hin6I	GCGC	4 cut(s)	126, 147, 364, 488
HinP1I	GCGC	4 cut(s)	126, 147, 364, 488
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	6 cut(s)	65, 650, 755, 761, 986, 1331
HpaII	CCGG	1 cut(s)	1066
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	2 cut(s)	421, 715
Hpy188I	TCNGA	5 cut(s)	36, 64, 204, 655, 760
Hpy188III	TCNNGA	5 cut(s)	155, 161, 737, 765, 890
Hpy8I	GTNNAC	2 cut(s)	421, 715
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	8, 1312
HpyCH4III	ACNGT	5 cut(s)	295, 306, 559, 712, 1163
HpyCH4IV	ACGT	1 cut(s)	1456
HpyCH4V	TGCA	6 cut(s)	415, 554, 577, 638, 1259, 1360
HpyF10VI	GCNNNNNNNGC	7 cut(s)	257, 412, 434, 446, 514, 892, 1058
HpyF3I	CTNAG	4 cut(s)	462, 946, 981, 1111
HpySE526I	ACGT	1 cut(s)	1456
Hsp92II	CATG	7 cut(s)	125, 336, 496, 540, 588, 686, 978
HspAI	GCGC	4 cut(s)	126, 147, 364, 488
Ksp22I	TGATCA	2 cut(s)	235, 351
Kzo9I	GATC	4 cut(s)	157, 235, 351, 1073
LmnI	GCTCC	5 cut(s)	4, 593, 670, 745, 883
Lsp1109I	GCAGC	4 cut(s)	136, 424, 760, 1372
LweI	GCATC	2 cut(s)	415, 564
MaeI	CTAG	2 cut(s)	737, 1421
MaeII	ACGT	1 cut(s)	1456
MaeIII	GTNAC	1 cut(s)	1157
MalI	GATC	4 cut(s)	159, 237, 353, 1075
MboI	GATC	4 cut(s)	157, 235, 351, 1073
MflI	RGATCY	1 cut(s)	1073
MhlI	GDGCHC	2 cut(s)	202, 897
MluCI	AATT	6 cut(s)	355, 395, 628, 877, 1382, 1416
MlyI	GAGTC	2 cut(s)	59, 995
MmeI	TCCRAC	1 cut(s)	1060
MnlI	CCTC	8 cut(s)	32, 131, 574, 712, 976, 1117, 1368, 1392
Mph1103I	ATGCAT	1 cut(s)	579
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	7 cut(s)	504, 531, 627, 773, 911, 1211, 1239
MslI	CAYNNNNRTG	1 cut(s)	1005
MspA1I	CMGCKG	1 cut(s)	1363
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	1 cut(s)	1066
MvnI	CGCG	2 cut(s)	78, 364
MwoI	GCNNNNNNNGC	7 cut(s)	257, 412, 434, 446, 514, 892, 1058
NcoI	CCATGG	2 cut(s)	121, 584
NdeII	GATC	4 cut(s)	157, 235, 351, 1073
NlaIII	CATG	7 cut(s)	125, 336, 496, 540, 588, 686, 978
NlaIV	GGNNCC	1 cut(s)	341
NsiI	ATGCAT	1 cut(s)	579
NspV	TTCGAA	1 cut(s)	523
PaqCI	CACCTGC	2 cut(s)	406, 838
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	4 cut(s)	650, 755, 761, 1331
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	7 cut(s)	46, 151, 363, 439, 516, 750, 1362
PleI	GAGTC	2 cut(s)	59, 994
PpsI	GAGTC	2 cut(s)	59, 994
Ppu21I	YACGTR	1 cut(s)	1457
PsiI	TTATAA	1 cut(s)	1410
PspFI	CCCAGC	2 cut(s)	596, 1057
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	2 cut(s)	94, 447
PsuI	RGATCY	1 cut(s)	1073
RsaI	GTAC	2 cut(s)	1165, 1294
RsaNI	GTAC	2 cut(s)	1164, 1293
RseI	CAYNNNNRTG	1 cut(s)	1005
SaqAI	TTAA	7 cut(s)	504, 531, 627, 773, 911, 1211, 1239
SatI	GCNGC	7 cut(s)	45, 150, 362, 438, 515, 749, 1361
Sau3AI	GATC	4 cut(s)	157, 235, 351, 1073
Sau96I	GGNCC	2 cut(s)	94, 447
ScaI	AGTACT	1 cut(s)	1165
SchI	GAGTC	2 cut(s)	59, 995
SduI	GDGCHC	2 cut(s)	202, 897
SfaNI	GCATC	2 cut(s)	415, 564
SfcI	CTRYAG	2 cut(s)	642, 708
SfuI	TTCGAA	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	1005
SmlI	CTYRAG	3 cut(s)	503, 509, 890
SmoI	CTYRAG	3 cut(s)	503, 509, 890
Sse9I	AATT	6 cut(s)	355, 395, 628, 877, 1382, 1416
SsiI	CCGC	7 cut(s)	44, 47, 78, 132, 362, 515, 1363
SspMI	CTAG	2 cut(s)	737, 1421
StyI	CCWWGG	3 cut(s)	121, 456, 584
TaaI	ACNGT	5 cut(s)	295, 306, 559, 712, 1163
TaiI	ACGT	1 cut(s)	1459
TaqI	TCGA	2 cut(s)	24, 523
TasI	AATT	6 cut(s)	355, 395, 628, 877, 1382, 1416
TatI	WGTACW	2 cut(s)	1163, 1292
TauI	GCSGC	3 cut(s)	47, 364, 517
TfiI	GAWTC	4 cut(s)	650, 755, 761, 1331
Tru1I	TTAA	7 cut(s)	504, 531, 627, 773, 911, 1211, 1239
Tru9I	TTAA	7 cut(s)	504, 531, 627, 773, 911, 1211, 1239
TscAI	CASTG	1 cut(s)	717
TseI	GCWGC	4 cut(s)	149, 437, 748, 1360
TspDTI	ATGAA	7 cut(s)	321, 324, 930, 963, 1184, 1257, 1461
TspGWI	ACGGA	1 cut(s)	583
TspRI	CASTG	1 cut(s)	717
Van91I	CCANNNNNTGG	1 cut(s)	590
Vha464I	CTTAAG	1 cut(s)	503
XapI	RAATTY	3 cut(s)	395, 877, 1416
XbaI	TCTAGA	1 cut(s)	736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	2 cut(s)	737, 1421
ZrmI	AGTACT	1 cut(s)	1165
Zsp2I	ATGCAT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.