Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009980

Physical Location & Seq

Genomic Coordinates Reverse (-)

1376617 .. 1377271

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1015500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAATTTGCCGTGCATCTACGACATTCTAGCAACATTTCATGAATTTGAGAAGCAAGCTGTGCAAGTGGATGATGCTATCTGGGCTGTTGAAAGTGCCACATTGACAGCTGAGATGGGTGGAAAGAAGCTAATGCACTCATGGAACAACTTAAGCTCAAGCCTCAACTTCAGACATTCAAGTGATTATCATGGCAGCAAGATCATGTCGCTTTTGGGAAGCTCTTTTGACGGCCGCCGTTGTTGGAGGTCAGTCTCTTCCTCTGCTTCCACTCGACTCCATTCATTTTATTTTTTATTTTTCATCATAAAAAATGAAAAATCGCTCGGGTTTTTTATTTTCCAATACTATTACGTATACTTTTTTACTTTTGGAAATGAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

129

Amino Acids

14.91

Weight (kDa)

6.96

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17240 AT5G17240
fragaria_vesca	FvH4_1g27420
malus_domestica	MD07G1015500.v1.1 MD17G1287300.v1.1
prunus_persica	Prupe.3G014000_v2.0.a1
pyrus_communis	pycom07g01180 pycom07g01780 pycom07g01830 pycom07g01860
rosa_chinensis	RchiOBHm_Chr3g0488621
rosa_laevigata	RLG00000022939
rosa_multiflora	Rmu_sc0005363.1_g000050
rosa_roxburghii	Rroxscaffold_6G00394090
rosa_rugosa	Rorug03G0239700 Rorug03G0239800
rosa_samantha	Rh3AG288600 Rh3BG325300 Rh3CG322900 Rh3DG321600
rosa_wichuraiana	Rw3G025540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	1 cut(s)	235
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	4, 44
AcuI	CTGAAG	1 cut(s)	154
AflII	CTTAAG	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	92, 180
AluBI	AGCT	5 cut(s)	59, 110, 130, 156, 222
AluI	AGCT	5 cut(s)	59, 110, 130, 156, 222
Alw26I	GTCTC	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	2 cut(s)	4, 44
AvaI	CYCGRG	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	109
BceAI	ACGGC	2 cut(s)	222, 247
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	29
BfrI	CTTAAG	1 cut(s)	151
BisI	GCNGC	2 cut(s)	196, 235
BlsI	GCNGC	2 cut(s)	197, 236
BmeT110I	CYCGRG	1 cut(s)	326
BmsI	GCATC	2 cut(s)	24, 64
BpuEI	CTTGAG	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	355
BseGI	GGATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	102
BseX3I	CGGCCG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	235
BsiHKCI	CYCGRG	1 cut(s)	326
BsmAI	GTCTC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	234
BsoBI	CYCGRG	1 cut(s)	326
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	40
BspTI	CTTAAG	1 cut(s)	151
BssMI	GATC	1 cut(s)	201
BssNAI	GTATAC	1 cut(s)	358
Bst1107I	GTATAC	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	262
BstAFI	CTTAAG	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	201
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 83
BstSNI	TACGTA	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	207
BstZ17I	GTATAC	1 cut(s)	358
BstZI	CGGCCG	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	57
CciI	TCATGA	1 cut(s)	40
CviAII	CATG	4 cut(s)	41, 141, 191, 205
CviJI	RGCY	8 cut(s)	59, 86, 110, 130, 156, 162, 222, 234
CviKI_1	RGCY	8 cut(s)	59, 86, 110, 130, 156, 162, 222, 234
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	232
EagI	CGGCCG	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
EclXI	CGGCCG	1 cut(s)	232
Eco105I	TACGTA	1 cut(s)	355
Eco52I	CGGCCG	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	154
Eco88I	CYCGRG	1 cut(s)	326
FaeI	CATG	4 cut(s)	44, 144, 194, 208
FaiI	YATR	6 cut(s)	42, 142, 192, 206, 308, 358
FatI	CATG	4 cut(s)	40, 140, 190, 204
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	2 cut(s)	196, 235
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	196, 235
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	2 cut(s)	196, 235
HaeIII	GGCC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	44, 144, 194, 208
HinfI	GANTC	1 cut(s)	276
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	2 cut(s)	173, 386
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	3 cut(s)	15, 64, 136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 83
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	4 cut(s)	44, 144, 194, 208
Kzo9I	GATC	1 cut(s)	201
LpnPI	CCDG	1 cut(s)	67
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	2 cut(s)	24, 64
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	354
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	1 cut(s)	249
MluCI	AATT	2 cut(s)	4, 44
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	3 cut(s)	173, 240, 271
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	110
MspCI	CTTAAG	1 cut(s)	151
MwoI	GCNNNNNNNGC	2 cut(s)	61, 83
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	4 cut(s)	44, 144, 194, 208
PagI	TCATGA	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	197, 236
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
Ppu21I	YACGTR	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	2 cut(s)	196, 235
Sau3AI	GATC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	270
SetI	ASST	7 cut(s)	61, 112, 132, 158, 224, 251, 357
SfaNI	GCATC	2 cut(s)	24, 64
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	151, 157
SmoI	CTYRAG	2 cut(s)	151, 157
SnaBI	TACGTA	1 cut(s)	355
Sse9I	AATT	2 cut(s)	4, 44
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	1 cut(s)	29
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	274
TasI	AATT	2 cut(s)	4, 44
TauI	GCSGC	1 cut(s)	237
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	6 cut(s)	17, 29, 57, 273, 292, 330
Vha464I	CTTAAG	1 cut(s)	151
XapI	RAATTY	2 cut(s)	4, 44
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.