Prupe.3G014000_v2.0.a1

Protein SET DOMAIN GROUP

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
1003953 .. 1010019
6067 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G014000.1

Sequence Viewer

Length: 1452 bp
ATGGAGCAAGGACAAGGATACCTCGAAAGGCTTTTGAAATGGGCAGCAGAGATTGGAATATCAGACTCAACTTGTTGCGGGGATTCGTGTTTGGGTCACTCTCTCGACGTCTCCTACTTTCCTAGCGCTGGCGGGAGAGGTTTGGGGGCTGCCCGTGATCTTAGAGAAGGAGAGTTACTTCTCAAAGTTCCAAAATCAGTTTTGATGACAAAGGAAAGTCTGTTATTGAAAGATGAAAAACTCTCCCTTTCTGTCAATGATTATGCCCATCACTCTCTGTCCCCTACCCAGATATTGGCTGTTTGTTTACTCTATGAAATGGGTAAAGGGAAGATTTCATGGTGGCACCCTTACCTTATGAATTTACCGCGCAGTTATGACATTTTAGCAACTTTTGGTGAATTTGAGAAGCAAGCTCTGCAAGTGGATGATGCTATCTGGGCTGCTGAGAAGGCCACATTGAAGGCTGAATATGAGTGGAAAGAAGCTAATGCGCTCATGAAACAACTTAAGCTCAAGCCTCAACTTCTGACCTTTAAAGCATGGCTTTGGGCTTCTGCAACTATATCCTCAAGGACATTGCATATACCATGGGATGCAGCTGGGTGCTTATGTCCTGTGGGAGACTTATTTAATTATTCTGCACCTGGAGAAGAGCCATCTCGTTGTGAAAGTATGGAGCATACAATGCATGACTTAGTGAATGAGGATACTTCGGGTATGGCAGATGTGGAGCAGCTTGTTTCTGATTCACGAAGATTAACTGATGGAGGGTTTGAGAAGGATGTTGATGCATATTGCTTCTATGCTAAGAAAAGTTACAAAAAAGGAGAGCAGGTCCTTTTAAGCTATGGAACGTATACAAATCTGGAGCTTCTTGAGCACTATGGCTTTCTCTTAAATGAAAATCCAAATGACAAAGTTTATATTCCCTTGGAACCTGAAATATATTCGTCCTGTTCGTGGCCAAAGGAGTCATTATTCATCCATCAGAATGGGAAGCCATCTTTTGCGCTACTGTCTACTTTGCGATTATGGGCAACCCCACAGAACCAGCGGAGGTCTGTTGGACACCTTGTTTATTCAGGACTCCATCTCTCAATTCAAAATGAGATGTTTATCTTGAGATGGATTTCAAAGAAGTGCACTACCATTTTGAAGAATCTGTCAACATCTTTTGAAGATGATAGTTTGTTATTAAGTGCCATTGACAAAATCCAAAATCTTGATGCCCCTTTGGAGCTCAACAATGTGTCATCCACTTGTAGAGATGAGATTTGTGCCTTTAAAGCTAATGTTCTGCAGAAGGGAGAAAGAAGTAGTATGGAGTCAAAGGAGAGGTGGAGATTAGCTGTGGAGTGGAGGCTTAGTTATAAGAAAATCCTGGTCGATTGCATTTCTTATTGTGATGAAATAGTAAGTTCTTTATTTCATCAAAATAACTCATCCTAG

Protein Analysis

484

Amino Acids

54.65

Weight (kDa)

5.57

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009980)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1374
AatII GACGTC 1 cut(s) 111
Acc36I ACCTGC 1 cut(s) 826
AccB1I GGYRCC 1 cut(s) 345
AccB7I CCANNNNNTGG 1 cut(s) 295
AccI GTMKAC 2 cut(s) 860, 1022
AccII CGCG 1 cut(s) 370
AciI CCGC 4 cut(s) 78, 132, 368, 1057
AcoI YGGCCR 1 cut(s) 965
AcsI RAATTY 2 cut(s) 361, 401
AcyI GRCGYC 1 cut(s) 108
AfeI AGCGCT 1 cut(s) 127
AfiI CCNNNNNNNGG 3 cut(s) 128, 295, 963
AflII CTTAAG 1 cut(s) 509
AgsI TTSAA 7 cut(s) 37, 229, 463, 1106, 1137, 1159, 1181
AjnI CCWGG 2 cut(s) 646, 1383
Alw21I GWGCWC 3 cut(s) 885, 1148, 1245
Alw26I GTCTC 2 cut(s) 115, 618
Alw44I GTGCAC 1 cut(s) 1144
Aor51HI AGCGCT 1 cut(s) 127
AoxI GGCC 2 cut(s) 453, 965
ApaLI GTGCAC 1 cut(s) 1144
ApeKI GCWGC 5 cut(s) 44, 149, 443, 599, 736
ApoI RAATTY 2 cut(s) 361, 401
AspLEI GCGC 4 cut(s) 128, 372, 496, 1015
AspS9I GGNCC 1 cut(s) 838
AsuHPI GGTGA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 838
BaeGI GKGCMC 1 cut(s) 1148
BalI TGGCCA 1 cut(s) 967
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 1245
BarI GAAGNNNNNNTAC 2 cut(s) 159, 191
Bbv12I GWGCWC 3 cut(s) 885, 1148, 1245
BbvI GCAGC 5 cut(s) 56, 136, 430, 611, 748
BccI CCATC 7 cut(s) 276, 667, 761, 996, 1012, 1101, 1122
BciT130I CCWGG 2 cut(s) 648, 1385
BciVI GTATCC 2 cut(s) 11, 703
BcoDI GTCTC 2 cut(s) 115, 618
BfaI CTAG 2 cut(s) 123, 1450
BfmI CTRYAG 1 cut(s) 1301
BfoI RGCGCY 1 cut(s) 129
BfrI CTTAAG 1 cut(s) 509
BfuAI ACCTGC 1 cut(s) 826
BfuI GTATCC 2 cut(s) 11, 703
BisI GCNGC 5 cut(s) 45, 150, 444, 600, 737
BlsI GCNGC 5 cut(s) 46, 151, 445, 601, 738
Bme1390I CCNGG 2 cut(s) 648, 1385
Bme18I GGWCC 1 cut(s) 838
BmgT120I GGNCC 1 cut(s) 838
BmiI GGNNCC 2 cut(s) 347, 939
BmrFI CCNGG 2 cut(s) 648, 1385
BmsI GCATC 4 cut(s) 421, 586, 781, 1219
BpmI CTGGAG 2 cut(s) 669, 890
BpuEI CTTGAG 4 cut(s) 500, 556, 899, 1144
BsaBI GATNNNNATC 1 cut(s) 1118
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 590, 933
BsaXI ACNNNNNCTCC 4 cut(s) 822, 852, 1354, 1384
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 295, 963
Bse3DI GCAATG 1 cut(s) 578
Bse8I GATNNNNATC 1 cut(s) 1118
BseBI CCWGG 2 cut(s) 648, 1385
BseDI CCNNGG 2 cut(s) 590, 933
BseGI GGATG 6 cut(s) 433, 601, 790, 984, 1256, 1445
BseJI GATNNNNATC 1 cut(s) 1118
BseLI CCNNNNNNNGG 3 cut(s) 128, 295, 963
BseMI GCAATG 1 cut(s) 578
BseMII CTCAG 1 cut(s) 438
BseSI GKGCMC 1 cut(s) 1148
BseXI GCAGC 5 cut(s) 56, 136, 430, 611, 748
BseYI CCCAGC 1 cut(s) 602
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 2 cut(s) 455, 967
BshNI GGYRCC 1 cut(s) 345
BsiHKAI GWGCWC 3 cut(s) 885, 1148, 1245
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 3 cut(s) 128, 295, 963
BsmAI GTCTC 2 cut(s) 115, 618
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 2 cut(s) 455, 967
Bsp1286I GDGCHC 3 cut(s) 885, 1148, 1245
Bsp143I GATC 1 cut(s) 157
Bsp19I CCATGG 1 cut(s) 590
BspACI CCGC 4 cut(s) 78, 132, 368, 1057
BspANI GGCC 2 cut(s) 455, 967
BspCNI CTCAG 1 cut(s) 439
BspFNI CGCG 1 cut(s) 370
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 2 cut(s) 347, 939
BspMAI CTGCAG 1 cut(s) 1305
BspMI ACCTGC 1 cut(s) 826
BspQI GCTCTTC 1 cut(s) 648
BspT107I GGYRCC 1 cut(s) 345
BspTI CTTAAG 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 578
BssECI CCNNGG 2 cut(s) 590, 933
BssMI GATC 1 cut(s) 157
BssNAI GTATAC 1 cut(s) 861
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 590, 933
Bst1107I GTATAC 1 cut(s) 861
Bst2UI CCWGG 2 cut(s) 648, 1385
Bst4CI ACNGT 1 cut(s) 1020
Bst6I CTCTTC 1 cut(s) 648
BstACI GRCGYC 1 cut(s) 108
BstAFI CTTAAG 1 cut(s) 509
BstAPI GCANNNNNTGC 2 cut(s) 418, 688
BstC8I GCNNGC 2 cut(s) 130, 414
BstDEI CTNAG 5 cut(s) 161, 447, 697, 810, 1367
BstDSI CCRYGG 1 cut(s) 590
BstF5I GGATG 6 cut(s) 433, 601, 790, 984, 1256, 1445
BstFNI CGCG 1 cut(s) 370
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 4 cut(s) 128, 372, 496, 1015
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 115, 618
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 6 cut(s) 418, 440, 452, 688, 880, 1289
BstNI CCWGG 2 cut(s) 648, 1385
BstSCI CCNGG 2 cut(s) 646, 1383
BstSFI CTRYAG 1 cut(s) 1301
BstSLI GKGCMC 1 cut(s) 1148
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 5 cut(s) 56, 136, 430, 611, 748
BstXI CCANNNNNNTGG 1 cut(s) 995
BstZ17I GTATAC 1 cut(s) 861
BsuI GTATCC 2 cut(s) 11, 703
BsuRI GGCC 2 cut(s) 455, 967
BtgI CCRYGG 1 cut(s) 590
BtsCI GGATG 6 cut(s) 433, 601, 790, 984, 1256, 1445
BveI ACCTGC 1 cut(s) 826
Cac8I GCNNGC 2 cut(s) 130, 414
CciI TCATGA 1 cut(s) 498
CfoI GCGC 4 cut(s) 128, 372, 496, 1015
Cfr13I GGNCC 1 cut(s) 838
CviAII CATG 5 cut(s) 339, 499, 543, 591, 692
DdeI CTNAG 5 cut(s) 161, 447, 697, 810, 1367
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DraI TTTAAA 2 cut(s) 538, 1288
EaeI YGGCCR 1 cut(s) 965
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Ecl136II GAGCTC 1 cut(s) 1243
Eco130I CCWWGG 2 cut(s) 590, 933
Eco24I GRGCYC 1 cut(s) 1245
Eco47I GGWCC 1 cut(s) 838
Eco47III AGCGCT 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 1243
EcoICRI GAGCTC 1 cut(s) 1243
EcoO109I RGGNCCY 1 cut(s) 838
EcoRII CCWGG 2 cut(s) 646, 1383
EcoT14I CCWWGG 2 cut(s) 590, 933
EcoT22I ATGCAT 2 cut(s) 693, 796
EcoT38I GRGCYC 1 cut(s) 1245
ErhI CCWWGG 2 cut(s) 590, 933
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 5 cut(s) 342, 502, 546, 594, 695
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FaqI GGGAC 1 cut(s) 265
FatI CATG 5 cut(s) 338, 498, 542, 590, 691
FauI CCCGC 2 cut(s) 71, 125
FblI GTMKAC 2 cut(s) 860, 1022
Fnu4HI GCNGC 5 cut(s) 45, 150, 444, 600, 737
FokI GGATG 6 cut(s) 440, 608, 797, 971, 1243, 1432
FriOI GRGCYC 1 cut(s) 1245
Fsp4HI GCNGC 5 cut(s) 45, 150, 444, 600, 737
FspBI CTAG 2 cut(s) 123, 1450
GlaI GCGC 4 cut(s) 127, 371, 495, 1014
GluI GCNGC 5 cut(s) 45, 150, 444, 600, 737
GsaI CCCAGC 1 cut(s) 606
GsuI CTGGAG 2 cut(s) 669, 890
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 455, 967
HhaI GCGC 4 cut(s) 128, 372, 496, 1015
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 5 cut(s) 342, 502, 546, 594, 695
Hin6I GCGC 4 cut(s) 126, 370, 494, 1013
HinP1I GCGC 4 cut(s) 126, 370, 494, 1013
HincII GTYRAC 1 cut(s) 1170
HindII GTYRAC 1 cut(s) 1170
HinfI GANTC 7 cut(s) 65, 83, 749, 974, 1089, 1162, 1328
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 5 cut(s) 308, 861, 1023, 1146, 1170
Hpy188I TCNGA 4 cut(s) 64, 531, 748, 993
Hpy188III TCNNGA 8 cut(s) 104, 499, 753, 869, 878, 1086, 1123, 1226
Hpy8I GTNNAC 5 cut(s) 308, 861, 1023, 1146, 1170
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 5 cut(s) 161, 445, 457, 775, 1300
HpyCH4III ACNGT 1 cut(s) 1020
HpyCH4IV ACGT 2 cut(s) 108, 857
HpyF10VI GCNNNNNNNGC 6 cut(s) 418, 440, 452, 688, 880, 1289
HpyF3I CTNAG 5 cut(s) 161, 447, 697, 810, 1367
HpySE526I ACGT 2 cut(s) 108, 857
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 5 cut(s) 342, 502, 546, 594, 695
HspAI GCGC 4 cut(s) 126, 370, 494, 1013
Kzo9I GATC 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 5 cut(s) 4, 679, 733, 871, 1240
Lsp1109I GCAGC 5 cut(s) 56, 136, 430, 611, 748
LweI GCATC 4 cut(s) 421, 586, 781, 1219
MaeI CTAG 2 cut(s) 123, 1450
MaeII ACGT 2 cut(s) 108, 857
MaeIII GTNAC 3 cut(s) 95, 174, 818
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 5 cut(s) 343, 665, 768, 1171, 1193
MhlI GDGCHC 3 cut(s) 885, 1148, 1245
MlsI TGGCCA 1 cut(s) 967
MluCI AATT 4 cut(s) 361, 401, 634, 1101
MluNI TGGCCA 1 cut(s) 967
MlyI GAGTC 4 cut(s) 59, 983, 1083, 1337
MmeI TCCRAC 1 cut(s) 1048
MnlI CCTC 9 cut(s) 32, 131, 531, 580, 700, 764, 1053, 1332, 1356
Mox20I TGGCCA 1 cut(s) 967
Mph1103I ATGCAT 2 cut(s) 693, 796
MscI TGGCCA 1 cut(s) 967
MseI TTAA 8 cut(s) 510, 537, 633, 761, 845, 899, 1199, 1287
MslI CAYNNNNRTG 1 cut(s) 993
Msp20I TGGCCA 1 cut(s) 967
MspA1I CMGCKG 2 cut(s) 602, 1057
MspCI CTTAAG 1 cut(s) 509
MspR9I CCNGG 2 cut(s) 648, 1385
MvaI CCWGG 2 cut(s) 648, 1385
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 6 cut(s) 418, 440, 452, 688, 880, 1289
NcoI CCATGG 1 cut(s) 590
NdeII GATC 1 cut(s) 157
NlaIII CATG 5 cut(s) 342, 502, 546, 594, 695
NlaIV GGNNCC 2 cut(s) 347, 939
NmuCI GTSAC 1 cut(s) 95
NsiI ATGCAT 2 cut(s) 693, 796
PagI TCATGA 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 959
PfeI GAWTC 3 cut(s) 83, 749, 1162
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 5 cut(s) 46, 151, 445, 601, 738
PleI GAGTC 4 cut(s) 59, 982, 1083, 1336
PpsI GAGTC 4 cut(s) 59, 982, 1083, 1336
PpuMI RGGWCCY 1 cut(s) 838
PsiI TTATAA 1 cut(s) 1374
Psp124BI GAGCTC 1 cut(s) 1245
Psp5II RGGWCCY 1 cut(s) 838
Psp6I CCWGG 2 cut(s) 646, 1383
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 2 cut(s) 646, 1383
PspN4I GGNNCC 2 cut(s) 347, 939
PspPI GGNCC 1 cut(s) 838
PspPPI RGGWCCY 1 cut(s) 838
PstI CTGCAG 1 cut(s) 1305
PvuII CAGCTG 1 cut(s) 602
RseI CAYNNNNRTG 1 cut(s) 993
SacI GAGCTC 1 cut(s) 1245
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 8 cut(s) 510, 537, 633, 761, 845, 899, 1199, 1287
SatI GCNGC 5 cut(s) 45, 150, 444, 600, 737
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 838
SchI GAGTC 4 cut(s) 59, 983, 1083, 1337
ScrFI CCNGG 2 cut(s) 648, 1385
SduI GDGCHC 3 cut(s) 885, 1148, 1245
SfaNI GCATC 4 cut(s) 421, 586, 781, 1219
SfcI CTRYAG 1 cut(s) 1301
SinI GGWCC 1 cut(s) 838
SmiMI CAYNNNNRTG 1 cut(s) 993
SmlI CTYRAG 5 cut(s) 509, 515, 571, 878, 1123
SmoI CTYRAG 5 cut(s) 509, 515, 571, 878, 1123
Sse9I AATT 4 cut(s) 361, 401, 634, 1101
SsiI CCGC 4 cut(s) 78, 132, 368, 1057
SspMI CTAG 2 cut(s) 123, 1450
SstI GAGCTC 1 cut(s) 1245
StyD4I CCNGG 2 cut(s) 646, 1383
StyI CCWWGG 2 cut(s) 590, 933
TaaI ACNGT 1 cut(s) 1020
TaiI ACGT 2 cut(s) 111, 860
TaqI TCGA 3 cut(s) 24, 105, 1389
TasI AATT 4 cut(s) 361, 401, 634, 1101
TfiI GAWTC 3 cut(s) 83, 749, 1162
Tru1I TTAA 8 cut(s) 510, 537, 633, 761, 845, 899, 1199, 1287
Tru9I TTAA 8 cut(s) 510, 537, 633, 761, 845, 899, 1199, 1287
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 5 cut(s) 44, 149, 443, 599, 736
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 9 cut(s) 249, 327, 330, 374, 515, 918, 973, 1421, 1425
Van91I CCANNNNNTGG 1 cut(s) 295
Vha464I CTTAAG 1 cut(s) 509
VneI GTGCAC 1 cut(s) 1144
VpaK11BI GGWCC 1 cut(s) 838
XapI RAATTY 2 cut(s) 361, 401
XmiI GTMKAC 2 cut(s) 860, 1022
XspI CTAG 2 cut(s) 123, 1450
ZraI GACGTC 1 cut(s) 109
Zsp2I ATGCAT 2 cut(s) 693, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.