MD17G1287300.v1.1

Protein SET DOMAIN GROUP

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
34663025 .. 34667892
4868 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1287300.v1.1.491

Sequence Viewer

Length: 1446 bp
ATGGAGCAAGGAGAAGGAAATCTCCAACGGCTTTTGAAATGGGCATCAGAAATTGGAATATCAGAGTCAACCAGTTGCCAAGCTTCGTGTTTGGGCCACTCTCTCGCCGTCTCCTTCTTTCCTGATTCCGGCGGAAGAGGTCTGGGTGCTGCTCGTGATCTTACAGAAGGAGAGTTGATTCTCAAAGTTCCAAAGTCCGCTTTGATGACAAGCACAAGTCTTGCAATGAAGGATGACAAACTCTCTCGTGCTCTCAATGCTCATCACTCTCTCTCCCCTACCCAGATATTGGCTGTTTGTTTACTATATGAAATGGGGAAAGGGAAGAGTTCATGGTGGCACCCTTACCTGGTGAATTTGCCGCACAGCTACGACATTCTAGCAACTTTTGGTGAATTTGAGAAGCAAGCTCTGCAAGTGGATGATGCTATATGGGCTGCTGAAAAGGCCACATTGAAGGCTGAGGATGATTGGAAAGAAGCTAATGCGCTCATGGAACAACTTAAGCTCAAGCCTCAACTTCGGACATTTCAGGCATGGCTTTGGGCTTCCGCAACTATATCCTCAAGGACGTTGCATATACCATGGGATGCAGCTGGGTGCTTATGTCCTGTTGGAGACTTATTTAATTATTCTGCACCTGGAGAAGAGCCTTCGGCTTGTGAAAGTATGGAGCATGCAACGCTTGACTTGGTGAATGATGATAGTTCTGGTACACTGGACGTGGACGTTTCTGATTCACGAAGATTAACTGACGGAGGGTTTGAGAAGGATATTGACGCCTATTGCTTCTATGCTAAGAAAAGCTACAAAAAAGGGGAGCAGGCCCTTTTAAGCTACGGAACATACACGAATCTGGAGCTTCTTGAGCACTATGGCTTTCTCTTAAATGGAAACCCAAATGACAAAGTTTTTATTCCCTTGGAACCTGAAATATATTCGTCCTGTTCATGGCCTAAAGAGTCATTGTATATACATCAGAGCGGGAAACCATCTTTTGCTCTACTGTCTGCCTTGCGATTATGGGCGACCCCACAGAACCAGCGAAGGTCTGTTGGACACCTTGTTTATTCAGGACTCCAACTCTCAATTCAAAATGAGATGTATGTCATGACATGGACATCGAAGAAGTGCAACACTATTTTGAAGAGTCTGCCGACATCTTTTGAAGATGATCGTTTGTTATCAAGTGCCATTGACAAAATCCAAAATCTCGAGTCCCCTTTGGAGCTCAATCATTTGTCATCCACTTGTAGAGATGAGATTTGTGCCTTCAAATCTAATGTTGCGCAGAAGGGAGAAAGAAGCAGTATGCAGTCAAGGGAGAGGTGGAGATTAGCTGTGGAGTGGAGGTTCAGTTATAAGAAGATCCTGGTTGATTGCATTTCTTATTGTGATGAAACTGTAAGTTATCTATTTCATGAAAACAACTCGGTCCAAAAATGA

Protein Analysis

482

Amino Acids

53.94

Weight (kDa)

5.48

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0009980)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1362
Acc16I TGCGCA 1 cut(s) 1290
AccB1I GGYRCC 1 cut(s) 339
AccB7I CCANNNNNTGG 1 cut(s) 289
AccBSI CCGCTC 1 cut(s) 984
AciI CCGC 5 cut(s) 132, 198, 362, 552, 984
AclWI GGATC 1 cut(s) 1363
AcsI RAATTY 2 cut(s) 355, 395
AcyI GRCGYC 1 cut(s) 780
AfaI GTAC 1 cut(s) 715
AfiI CCNNNNNNNGG 4 cut(s) 128, 289, 349, 951
AflII CTTAAG 1 cut(s) 503
AgsI TTSAA 6 cut(s) 37, 457, 1094, 1147, 1169, 1276
AjiI CACGTC 1 cut(s) 724
AjnI CCWGG 3 cut(s) 348, 640, 1371
AjuI GAANNNNNNNTTGG 2 cut(s) 1074, 1106
AloI GAACNNNNNNTCC 2 cut(s) 1337, 1369
Alw21I GWGCWC 3 cut(s) 253, 873, 1233
Alw26I GTCTC 2 cut(s) 115, 612
AlwI GGATC 1 cut(s) 1363
Ama87I CYCGRG 1 cut(s) 1214
AoxI GGCC 4 cut(s) 94, 447, 825, 953
ApeKI GCWGC 3 cut(s) 149, 437, 593
ApoI RAATTY 2 cut(s) 355, 395
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
AspLEI GCGC 2 cut(s) 490, 1291
AspS9I GGNCC 3 cut(s) 94, 826, 1435
AsuHPI GGTGA 3 cut(s) 364, 404, 706
AvaI CYCGRG 1 cut(s) 1214
AvaII GGWCC 1 cut(s) 1435
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 1 cut(s) 1233
BauI CACGAG 2 cut(s) 153, 246
Bbv12I GWGCWC 3 cut(s) 253, 873, 1233
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 3 cut(s) 136, 424, 605
BccI CCATC 1 cut(s) 1000
BceAI ACGGC 2 cut(s) 44, 92
BciT130I CCWGG 3 cut(s) 350, 642, 1373
BcoDI GTCTC 2 cut(s) 115, 612
BfaI CTAG 1 cut(s) 380
BfrI CTTAAG 1 cut(s) 503
BisI GCNGC 4 cut(s) 150, 362, 438, 594
BlsI GCNGC 4 cut(s) 151, 363, 439, 595
Bme1390I CCNGG 3 cut(s) 350, 642, 1373
Bme18I GGWCC 1 cut(s) 1435
BmeT110I CYCGRG 1 cut(s) 1214
BmgBI CACGTC 1 cut(s) 724
BmgT120I GGNCC 3 cut(s) 94, 826, 1435
BmiI GGNNCC 2 cut(s) 341, 927
BmrFI CCNGG 3 cut(s) 350, 642, 1373
BmsI GCATC 3 cut(s) 53, 415, 580
BpmI CTGGAG 2 cut(s) 663, 878
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 3 cut(s) 494, 550, 887
BsaHI GRCGYC 1 cut(s) 780
BsaJI CCNNGG 2 cut(s) 584, 921
BsaXI ACNNNNNCTCC 6 cut(s) 257, 287, 1337, 1342, 1367, 1372
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 289, 349, 951
Bse1I ACTGG 2 cut(s) 72, 723
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 3 cut(s) 350, 642, 1373
BseDI CCNNGG 2 cut(s) 584, 921
BseGI GGATG 5 cut(s) 238, 427, 472, 595, 1244
BseLI CCNNNNNNNGG 4 cut(s) 128, 289, 349, 951
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 2 cut(s) 72, 723
BseXI GCAGC 3 cut(s) 136, 424, 605
BseYI CCCAGC 1 cut(s) 596
BsgI GTGCAG 1 cut(s) 621
BshFI GGCC 4 cut(s) 96, 449, 827, 955
BshNI GGYRCC 1 cut(s) 339
BsiHKAI GWGCWC 3 cut(s) 253, 873, 1233
BsiHKCI CYCGRG 1 cut(s) 1214
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 1204
BslI CCNNNNNNNGG 4 cut(s) 128, 289, 349, 951
BsmAI GTCTC 2 cut(s) 115, 612
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 1204
BsnI GGCC 4 cut(s) 96, 449, 827, 955
BsoBI CYCGRG 1 cut(s) 1214
Bsp1286I GDGCHC 3 cut(s) 253, 873, 1233
Bsp143I GATC 3 cut(s) 157, 1174, 1368
Bsp19I CCATGG 1 cut(s) 584
BspACI CCGC 5 cut(s) 132, 198, 362, 552, 984
BspANI GGCC 4 cut(s) 96, 449, 827, 955
BspCNI CTCAG 1 cut(s) 454
BspHI TCATGA 2 cut(s) 1110, 1420
BspLI GGNNCC 2 cut(s) 341, 927
BspPI GGATC 1 cut(s) 1363
BspQI GCTCTTC 1 cut(s) 642
BspT107I GGYRCC 1 cut(s) 339
BspTI CTTAAG 1 cut(s) 503
BsrBI CCGCTC 1 cut(s) 984
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 2 cut(s) 72, 723
BssECI CCNNGG 2 cut(s) 584, 921
BssMI GATC 3 cut(s) 157, 1174, 1368
BssNI GRCGYC 1 cut(s) 780
BssSI CACGAG 2 cut(s) 153, 246
BssT1I CCWWGG 2 cut(s) 584, 921
Bst2BI CACGAG 2 cut(s) 153, 246
Bst2UI CCWGG 3 cut(s) 350, 642, 1373
Bst4CI ACNGT 2 cut(s) 1008, 1405
Bst6I CTCTTC 4 cut(s) 130, 320, 642, 1142
BstACI GRCGYC 1 cut(s) 780
BstAFI CTTAAG 1 cut(s) 503
BstAPI GCANNNNNTGC 1 cut(s) 412
BstC8I GCNNGC 3 cut(s) 408, 678, 825
BstDEI CTNAG 2 cut(s) 462, 798
BstDSI CCRYGG 1 cut(s) 584
BstF5I GGATG 5 cut(s) 238, 427, 472, 595, 1244
BstHHI GCGC 2 cut(s) 490, 1291
BstKTI GATC 3 cut(s) 160, 1177, 1371
BstMAI GTCTC 2 cut(s) 115, 612
BstMBI GATC 3 cut(s) 157, 1174, 1368
BstMWI GCNNNNNNNGC 6 cut(s) 257, 412, 434, 446, 682, 868
BstNI CCWGG 3 cut(s) 350, 642, 1373
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 3 cut(s) 348, 640, 1371
BstV1I GCAGC 3 cut(s) 136, 424, 605
BstX2I RGATCY 1 cut(s) 1368
BstYI RGATCY 1 cut(s) 1368
BsuRI GGCC 4 cut(s) 96, 449, 827, 955
BtgI CCRYGG 1 cut(s) 584
BtrI CACGTC 1 cut(s) 724
BtsCI GGATG 5 cut(s) 238, 427, 472, 595, 1244
BtsIMutI CAGTG 1 cut(s) 716
Cac8I GCNNGC 3 cut(s) 408, 678, 825
CciI TCATGA 2 cut(s) 1110, 1420
CfoI GCGC 2 cut(s) 490, 1291
Cfr13I GGNCC 3 cut(s) 94, 826, 1435
CseI GACGC 1 cut(s) 788
CsiI ACCWGGT 1 cut(s) 348
Csp6I GTAC 1 cut(s) 714
CviAII CATG 9 cut(s) 333, 493, 537, 585, 677, 951, 1111, 1116, 1421
CviQI GTAC 1 cut(s) 714
DdeI CTNAG 2 cut(s) 462, 798
DpnI GATC 3 cut(s) 159, 1176, 1370
DpnII GATC 3 cut(s) 157, 1174, 1368
Eam1104I CTCTTC 4 cut(s) 130, 320, 642, 1142
EarI CTCTTC 4 cut(s) 130, 320, 642, 1142
EciI GGCGGA 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 1231
Eco130I CCWWGG 2 cut(s) 584, 921
Eco24I GRGCYC 1 cut(s) 1233
Eco47I GGWCC 1 cut(s) 1435
Eco53kI GAGCTC 1 cut(s) 1231
Eco88I CYCGRG 1 cut(s) 1214
EcoICRI GAGCTC 1 cut(s) 1231
EcoO109I RGGNCCY 1 cut(s) 826
EcoRII CCWGG 3 cut(s) 348, 640, 1371
EcoT14I CCWWGG 2 cut(s) 584, 921
EcoT38I GRGCYC 1 cut(s) 1233
ErhI CCWWGG 2 cut(s) 584, 921
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 9 cut(s) 336, 496, 540, 588, 680, 954, 1114, 1119, 1424
FaqI GGGAC 1 cut(s) 1204
FatI CATG 9 cut(s) 332, 492, 536, 584, 676, 950, 1110, 1115, 1420
FauI CCCGC 1 cut(s) 977
Fnu4HI GCNGC 4 cut(s) 150, 362, 438, 594
FokI GGATG 5 cut(s) 245, 434, 479, 602, 1231
FriOI GRGCYC 1 cut(s) 1233
Fsp4HI GCNGC 4 cut(s) 150, 362, 438, 594
FspBI CTAG 1 cut(s) 380
FspI TGCGCA 1 cut(s) 1290
GlaI GCGC 2 cut(s) 489, 1290
GluI GCNGC 4 cut(s) 150, 362, 438, 594
GsaI CCCAGC 1 cut(s) 600
GsuI CTGGAG 2 cut(s) 663, 878
HaeIII GGCC 4 cut(s) 96, 449, 827, 955
HapII CCGG 1 cut(s) 129
HgaI GACGC 1 cut(s) 788
HhaI GCGC 2 cut(s) 490, 1291
Hin1I GRCGYC 1 cut(s) 780
Hin1II CATG 9 cut(s) 336, 496, 540, 588, 680, 954, 1114, 1119, 1424
Hin6I GCGC 2 cut(s) 488, 1289
HinP1I GCGC 2 cut(s) 488, 1289
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 81
HinfI GANTC 9 cut(s) 65, 125, 178, 737, 853, 962, 1077, 1150, 1217
HpaII CCGG 1 cut(s) 129
HphI GGTGA 3 cut(s) 364, 404, 706
Hpy166II GTNNAC 4 cut(s) 69, 302, 716, 727
Hpy188I TCNGA 5 cut(s) 49, 64, 525, 736, 981
Hpy188III TCNNGA 9 cut(s) 122, 155, 741, 857, 866, 1074, 1111, 1214, 1421
Hpy8I GTNNAC 4 cut(s) 69, 302, 716, 727
HpyCH4III ACNGT 2 cut(s) 1008, 1405
HpyCH4IV ACGT 3 cut(s) 572, 723, 729
HpyCH4V TGCA 9 cut(s) 224, 415, 577, 593, 638, 680, 1134, 1315, 1383
HpyF10VI GCNNNNNNNGC 6 cut(s) 257, 412, 434, 446, 682, 868
HpyF3I CTNAG 2 cut(s) 462, 798
HpySE526I ACGT 3 cut(s) 572, 723, 729
Hsp92I GRCGYC 1 cut(s) 780
Hsp92II CATG 9 cut(s) 336, 496, 540, 588, 680, 954, 1114, 1119, 1424
HspAI GCGC 2 cut(s) 488, 1289
Kzo9I GATC 3 cut(s) 157, 1174, 1368
LguI GCTCTTC 1 cut(s) 642
LmnI GCTCC 5 cut(s) 4, 673, 820, 859, 1228
Lsp1109I GCAGC 3 cut(s) 136, 424, 605
LweI GCATC 3 cut(s) 53, 415, 580
MabI ACCWGGT 1 cut(s) 348
MaeI CTAG 1 cut(s) 380
MaeII ACGT 3 cut(s) 572, 723, 729
MalI GATC 3 cut(s) 159, 1176, 1370
MbiI CCGCTC 1 cut(s) 984
MboI GATC 3 cut(s) 157, 1174, 1368
MboII GAAGA 8 cut(s) 147, 337, 659, 756, 1138, 1159, 1181, 1378
MflI RGATCY 1 cut(s) 1368
MhlI GDGCHC 3 cut(s) 253, 873, 1233
MluCI AATT 5 cut(s) 51, 355, 395, 628, 1089
MlyI GAGTC 5 cut(s) 74, 971, 1071, 1159, 1226
MmeI TCCRAC 4 cut(s) 49, 595, 1036, 1105
MnlI CCTC 7 cut(s) 131, 457, 525, 574, 752, 1320, 1344
MseI TTAA 5 cut(s) 504, 627, 749, 833, 887
MspA1I CMGCKG 1 cut(s) 596
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 3 cut(s) 350, 642, 1373
MvaI CCWGG 3 cut(s) 350, 642, 1373
MwoI GCNNNNNNNGC 6 cut(s) 257, 412, 434, 446, 682, 868
NcoI CCATGG 1 cut(s) 584
NdeII GATC 3 cut(s) 157, 1174, 1368
NlaIII CATG 9 cut(s) 336, 496, 540, 588, 680, 954, 1114, 1119, 1424
NlaIV GGNNCC 2 cut(s) 341, 927
NsbI TGCGCA 1 cut(s) 1290
NspI RCATGY 1 cut(s) 680
PaeI GCATGC 1 cut(s) 680
PaeR7I CTCGAG 1 cut(s) 1214
PagI TCATGA 2 cut(s) 1110, 1420
PciSI GCTCTTC 1 cut(s) 642
PfeI GAWTC 4 cut(s) 125, 178, 737, 853
PflMI CCANNNNNTGG 1 cut(s) 289
PkrI GCNGC 4 cut(s) 151, 363, 439, 595
PleI GAGTC 5 cut(s) 73, 970, 1071, 1158, 1225
PpsI GAGTC 5 cut(s) 73, 970, 1071, 1158, 1225
PsiI TTATAA 1 cut(s) 1362
Psp124BI GAGCTC 1 cut(s) 1233
Psp6I CCWGG 3 cut(s) 348, 640, 1371
PspFI CCCAGC 1 cut(s) 596
PspGI CCWGG 3 cut(s) 348, 640, 1371
PspN4I GGNNCC 2 cut(s) 341, 927
PspPI GGNCC 3 cut(s) 94, 826, 1435
PsuI RGATCY 1 cut(s) 1368
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 1 cut(s) 715
RsaNI GTAC 1 cut(s) 714
SacI GAGCTC 1 cut(s) 1233
SapI GCTCTTC 1 cut(s) 642
SaqAI TTAA 5 cut(s) 504, 627, 749, 833, 887
SatI GCNGC 4 cut(s) 150, 362, 438, 594
Sau3AI GATC 3 cut(s) 157, 1174, 1368
Sau96I GGNCC 3 cut(s) 94, 826, 1435
SchI GAGTC 5 cut(s) 74, 971, 1071, 1159, 1226
ScrFI CCNGG 3 cut(s) 350, 642, 1373
SduI GDGCHC 3 cut(s) 253, 873, 1233
SexAI ACCWGGT 1 cut(s) 348
SfaNI GCATC 3 cut(s) 53, 415, 580
Sfr274I CTCGAG 1 cut(s) 1214
SinI GGWCC 1 cut(s) 1435
SlaI CTCGAG 1 cut(s) 1214
SmlI CTYRAG 5 cut(s) 503, 509, 565, 866, 1214
SmoI CTYRAG 5 cut(s) 503, 509, 565, 866, 1214
SphI GCATGC 1 cut(s) 680
Sse9I AATT 5 cut(s) 51, 355, 395, 628, 1089
SsiI CCGC 5 cut(s) 132, 198, 362, 552, 984
SspMI CTAG 1 cut(s) 380
SstI GAGCTC 1 cut(s) 1233
StyD4I CCNGG 3 cut(s) 348, 640, 1371
StyI CCWWGG 2 cut(s) 584, 921
TaaI ACNGT 2 cut(s) 1008, 1405
TaiI ACGT 3 cut(s) 575, 726, 732
TaqI TCGA 2 cut(s) 1124, 1215
TaqII GACCGA 1 cut(s) 1423
TasI AATT 5 cut(s) 51, 355, 395, 628, 1089
TauI GCSGC 1 cut(s) 364
TfiI GAWTC 4 cut(s) 125, 178, 737, 853
Tru1I TTAA 5 cut(s) 504, 627, 749, 833, 887
Tru9I TTAA 5 cut(s) 504, 627, 749, 833, 887
TscAI CASTG 1 cut(s) 723
TseI GCWGC 3 cut(s) 149, 437, 593
TspDTI ATGAA 7 cut(s) 242, 321, 324, 939, 1409, 1413, 1437
TspGWI ACGGA 2 cut(s) 771, 855
TspRI CASTG 1 cut(s) 723
Van91I CCANNNNNTGG 1 cut(s) 289
Vha464I CTTAAG 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 1435
XapI RAATTY 2 cut(s) 355, 395
XceI RCATGY 1 cut(s) 680
XhoI CTCGAG 1 cut(s) 1214
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.