Rh3BG325300

Protein SET DOMAIN GROUP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009980
Physical Location & Seq
Reverse (-)
33808885 .. 33813769
4885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG325300.1

Sequence Viewer

Length: 1551 bp
ATGTTTTCATTTTATTTAACAACATTGTATAACCAATCATGGCATCAGAGTAAACGACTTAACATGGAGCAAGAAGAAGGCAACCTCGAAAGGCTTCTGAAATGGGCGGCGGAGTTTGGTATATCAGACTCAAAATGTCGCGGCCTTTCGTGTTTGGGCCACTCTCTCATCGTCTCCTACTTCCATGGCGCAGGCGGGAGAGGTTTGGGCGCTGCTCGTGATATTGAAAAAGGAGAGTTAGTTCTCAAAGTTCCAAAATCGGCTCTGTTTACAAGGGAAAGTCTGTTGTTGAAAGATGATCAACTCTCTGTTGCTGTCAATGCCCATAGCTCTCTCTCCCCTACCCAGACATTGACGGTTTGTTTACTGTATGAAATGGGTAAAGGGAAGACTTCATGGTGGCACCCTTACCTGATCAATTTGCCGCGCAGTTATGACATTATAGCAACATTTGGTGAATTTGAGAAGCAAGCTCTGCAGGTGGACGATGCTATCTGGCCGGCTGATAAGGCCATTTCCAAGGCTGAGTTTGAGTGGAAAGAGACCAATGCACTCATGGAACAACTTAAGCTCAAGCCGCAACTTCGAACATTTAGGGCATGGCTTTGGGCTTCTGCAACTGTATCCTCACGGACGATGCATATACCATGGGATGGAGCTGGGTGTTTATGTCCTGTGGGAGACTTATTTAATTATTCTGCACCTGTAGAAGAATCTGATTTTGAAAATATGGAGCATAGAACACATGACTTGGCCTTACAGGATATCTCTACAGTGAACGAGGAAACTTCGTGTATTCTAGATATGGAGCAGCTTGATTCTGATTCGGGAAGATTAACTGATGGCAGGTTTGAGAACGATGTTGGGGCGTATTGCTTCTATGCGAAGAAAAGTTATAGAAAAGGAGAGCAGGTGCTTTTGAGCTATGGAACATACACAAATTTGGAGCTTCTTGAGCACTATGGCTTTCTCTTAAATGAAAATCCAAATGACAAAGTTTTTATTCCCTTAGAACCAGAAATATATTCCTCTTGTTCATGGCCTAAGGAGTCCCTATATATCCATCAAAGTGGAAAGCCGTCTTTTGCTCTACTTTCGGCTCTGCGATTATGGGCAACCCCAGCAAACCGGCGAAGATCTGTTGGACACCTTGCTTATTCAGGGCTTCAACTCTCAGTTGAAAATGAGGTATTTGTTATGAGATGGATTTCAAACAAGTGTAACAGTACTATGAAGAATCTGCCAACAACTTTTGAAGAAGATTGTCTTCTATTAAGTGTCATTGACAAAATCCAAAATGTTAATGCCCCTTTGGAGTTTGCAAATGTTTCATCTGTATCAACAGATGAGGTTTGCACTTTTAGGGCTAATGTTTTGAAGAAGGGAGAAACAGATTCCAAAACACTTGTGTCAGGGAAAATGCAGCGGTCAAGGGAGAGGTGGAAATTAGCTGTCGAGTGGAGGCTTGGTTATAAGAAAATTCTCGTTGATTGTATTTCTTTCTGTGATGAAATGATACGTGTTCTTTGTTCTCAAATAACTCATTCCTAA

Protein Analysis

516

Amino Acids

58.63

Weight (kDa)

5.83

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17240 AT5G17240
fragaria_vesca FvH4_1g27420
malus_domestica MD07G1015500.v1.1 MD17G1287300.v1.1
prunus_persica Prupe.3G014000_v2.0.a1
pyrus_communis pycom07g01180 pycom07g01780 pycom07g01830 pycom07g01860
rosa_chinensis RchiOBHm_Chr3g0488621
rosa_laevigata RLG00000022939
rosa_multiflora Rmu_sc0005363.1_g000050
rosa_roxburghii Rroxscaffold_6G00394090
rosa_rugosa Rorug03G0239700 Rorug03G0239800
rosa_samantha Rh3AG288600 Rh3BG325300 Rh3CG322900 Rh3DG321600
rosa_wichuraiana Rw3G025540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1473
AarI CACCTGC 2 cut(s) 469, 901
Acc36I ACCTGC 3 cut(s) 469, 837, 901
AccB1I GGYRCC 1 cut(s) 402
AccB7I CCANNNNNTGG 1 cut(s) 653
AccII CGCG 2 cut(s) 141, 427
AciI CCGC 7 cut(s) 107, 110, 141, 195, 425, 578, 1426
AcoI YGGCCR 1 cut(s) 497
AcsI RAATTY 3 cut(s) 458, 940, 1479
AfaI GTAC 1 cut(s) 1228
AfiI CCNNNNNNNGG 1 cut(s) 653
AflII CTTAAG 1 cut(s) 566
AflIII ACRYGT 1 cut(s) 1519
AgsI TTSAA 8 cut(s) 227, 292, 725, 1169, 1181, 1212, 1256, 1378
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
AluBI AGCT 8 cut(s) 330, 473, 571, 659, 814, 924, 949, 1451
AluI AGCT 8 cut(s) 330, 473, 571, 659, 814, 924, 949, 1451
Alw21I GWGCWC 1 cut(s) 960
Alw26I GTCTC 3 cut(s) 178, 536, 675
AoxI GGCC 6 cut(s) 142, 157, 497, 510, 753, 1040
ApeKI GCWGC 3 cut(s) 212, 811, 1423
ApoI RAATTY 3 cut(s) 458, 940, 1479
Asp700I GAANNNNTTC 1 cut(s) 93
AspLEI GCGC 3 cut(s) 191, 212, 429
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 467
AsuII TTCGAA 1 cut(s) 586
AxyI CCTNAGG 1 cut(s) 1044
BanI GGYRCC 1 cut(s) 402
BauI CACGAG 1 cut(s) 216
BbsI GAAGAC 2 cut(s) 395, 1259
Bbv12I GWGCWC 1 cut(s) 960
BbvI GCAGC 3 cut(s) 199, 823, 1435
BccI CCATC 4 cut(s) 647, 836, 1071, 1197
BceAI ACGGC 1 cut(s) 1063
BciVI GTATCC 1 cut(s) 634
BclI TGATCA 2 cut(s) 298, 414
BcoDI GTCTC 3 cut(s) 178, 536, 675
BfaI CTAG 1 cut(s) 800
BfmI CTRYAG 3 cut(s) 476, 705, 771
BfoI RGCGCY 1 cut(s) 213
BfrI CTTAAG 1 cut(s) 566
BfuAI ACCTGC 3 cut(s) 469, 837, 901
BfuI GTATCC 1 cut(s) 634
BglII AGATCT 1 cut(s) 1136
BisI GCNGC 7 cut(s) 108, 142, 213, 425, 578, 812, 1424
BlsI GCNGC 7 cut(s) 109, 143, 214, 426, 579, 813, 1425
BmcAI AGTACT 1 cut(s) 1228
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 404
BmsI GCATC 3 cut(s) 52, 478, 627
BpiI GAAGAC 2 cut(s) 395, 1259
Bpu14I TTCGAA 1 cut(s) 586
BpuEI CTTGAG 2 cut(s) 557, 974
BsaAI YACGTR 1 cut(s) 1520
BsaI GGTCTC 1 cut(s) 536
BsaJI CCNNGG 3 cut(s) 184, 519, 647
BsaXI ACNNNNNCTCC 6 cut(s) 225, 255, 897, 927, 1453, 1483
Bsc4I CCNNNNNNNGG 1 cut(s) 653
Bse118I RCCGGY 2 cut(s) 499, 1128
Bse21I CCTNAGG 1 cut(s) 1044
BseDI CCNNGG 3 cut(s) 184, 519, 647
BseGI GGATG 1 cut(s) 658
BseLI CCNNNNNNNGG 1 cut(s) 653
BseMII CTCAG 2 cut(s) 516, 1188
BseXI GCAGC 3 cut(s) 199, 823, 1435
BseYI CCCAGC 2 cut(s) 659, 1120
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 2 cut(s) 141, 427
BshFI GGCC 6 cut(s) 144, 159, 499, 512, 755, 1042
BshNI GGYRCC 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 960
BsiSI CCGG 2 cut(s) 500, 1129
BslFI GGGAC 1 cut(s) 1036
BslI CCNNNNNNNGG 1 cut(s) 653
BsmAI GTCTC 3 cut(s) 178, 536, 675
BsmBI CGTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 1036
BsnI GGCC 6 cut(s) 144, 159, 499, 512, 755, 1042
Bso31I GGTCTC 1 cut(s) 536
Bsp119I TTCGAA 1 cut(s) 586
Bsp1286I GDGCHC 1 cut(s) 960
Bsp143I GATC 3 cut(s) 298, 414, 1136
Bsp19I CCATGG 2 cut(s) 184, 647
BspACI CCGC 7 cut(s) 107, 110, 141, 195, 425, 578, 1426
BspANI GGCC 6 cut(s) 144, 159, 499, 512, 755, 1042
BspCNI CTCAG 2 cut(s) 517, 1187
BspFNI CGCG 2 cut(s) 141, 427
BspLI GGNNCC 1 cut(s) 404
BspMAI CTGCAG 1 cut(s) 480
BspMI ACCTGC 3 cut(s) 469, 837, 901
BspT104I TTCGAA 1 cut(s) 586
BspT107I GGYRCC 1 cut(s) 402
BspTI CTTAAG 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 536
BsrFI RCCGGY 2 cut(s) 499, 1128
BssAI RCCGGY 2 cut(s) 499, 1128
BssECI CCNNGG 3 cut(s) 184, 519, 647
BssMI GATC 3 cut(s) 298, 414, 1136
BssSI CACGAG 1 cut(s) 216
BssT1I CCWWGG 3 cut(s) 184, 519, 647
Bst2BI CACGAG 1 cut(s) 216
Bst4CI ACNGT 5 cut(s) 358, 369, 622, 775, 1226
BstAFI CTTAAG 1 cut(s) 566
BstAPI GCANNNNNTGC 1 cut(s) 475
BstBAI YACGTR 1 cut(s) 1520
BstBI TTCGAA 1 cut(s) 586
BstC8I GCNNGC 3 cut(s) 193, 471, 501
BstDEI CTNAG 4 cut(s) 525, 1009, 1044, 1174
BstDSI CCRYGG 2 cut(s) 184, 647
BstF5I GGATG 1 cut(s) 658
BstFNI CGCG 2 cut(s) 141, 427
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 3 cut(s) 191, 212, 429
BstKTI GATC 3 cut(s) 301, 417, 1139
BstMAI GTCTC 3 cut(s) 178, 536, 675
BstMBI GATC 3 cut(s) 298, 414, 1136
BstMWI GCNNNNNNNGC 6 cut(s) 320, 475, 509, 577, 955, 1121
BstSFI CTRYAG 3 cut(s) 476, 705, 771
BstUI CGCG 2 cut(s) 141, 427
BstV1I GCAGC 3 cut(s) 199, 823, 1435
BstV2I GAAGAC 2 cut(s) 395, 1259
BstX2I RGATCY 1 cut(s) 1136
BstXI CCANNNNNNTGG 1 cut(s) 1070
BstYI RGATCY 1 cut(s) 1136
Bsu36I CCTNAGG 1 cut(s) 1044
BsuI GTATCC 1 cut(s) 634
BsuRI GGCC 6 cut(s) 144, 159, 499, 512, 755, 1042
BtgI CCRYGG 2 cut(s) 184, 647
BtsCI GGATG 1 cut(s) 658
BtsIMutI CAGTG 1 cut(s) 780
BveI ACCTGC 3 cut(s) 469, 837, 901
Cac8I GCNNGC 3 cut(s) 193, 471, 501
CfoI GCGC 3 cut(s) 191, 212, 429
Cfr10I RCCGGY 2 cut(s) 499, 1128
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 1227
CviAII CATG 9 cut(s) 39, 64, 185, 396, 556, 600, 648, 746, 1038
CviQI GTAC 1 cut(s) 1227
DdeI CTNAG 4 cut(s) 525, 1009, 1044, 1174
DpnI GATC 3 cut(s) 300, 416, 1138
DpnII GATC 3 cut(s) 298, 414, 1136
EaeI YGGCCR 1 cut(s) 497
EciI GGCGGA 1 cut(s) 125
Eco130I CCWWGG 3 cut(s) 184, 519, 647
Eco31I GGTCTC 1 cut(s) 536
Eco32I GATATC 1 cut(s) 766
Eco81I CCTNAGG 1 cut(s) 1044
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 3 cut(s) 184, 519, 647
EcoT22I ATGCAT 1 cut(s) 642
ErhI CCWWGG 3 cut(s) 184, 519, 647
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 9 cut(s) 42, 67, 188, 399, 559, 603, 651, 749, 1041
FalI AAGNNNNNCTT 2 cut(s) 1251, 1283
FaqI GGGAC 1 cut(s) 1036
FatI CATG 9 cut(s) 38, 63, 184, 395, 555, 599, 647, 745, 1037
FauI CCCGC 1 cut(s) 188
FbaI TGATCA 2 cut(s) 298, 414
Fnu4HI GCNGC 7 cut(s) 108, 142, 213, 425, 578, 812, 1424
FokI GGATG 1 cut(s) 665
Fsp4HI GCNGC 7 cut(s) 108, 142, 213, 425, 578, 812, 1424
FspBI CTAG 1 cut(s) 800
GlaI GCGC 3 cut(s) 190, 211, 428
GluI GCNGC 7 cut(s) 108, 142, 213, 425, 578, 812, 1424
GsaI CCCAGC 2 cut(s) 663, 1124
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 6 cut(s) 144, 159, 499, 512, 755, 1042
HapII CCGG 2 cut(s) 500, 1129
HhaI GCGC 3 cut(s) 191, 212, 429
Hin1II CATG 9 cut(s) 42, 67, 188, 399, 559, 603, 651, 749, 1041
Hin6I GCGC 3 cut(s) 189, 210, 427
HinP1I GCGC 3 cut(s) 189, 210, 427
HinfI GANTC 7 cut(s) 128, 713, 818, 824, 1049, 1237, 1394
HpaII CCGG 2 cut(s) 500, 1129
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 5 cut(s) 53, 270, 365, 484, 778
Hpy188I TCNGA 5 cut(s) 48, 99, 127, 718, 823
Hpy188III TCNNGA 4 cut(s) 218, 800, 828, 953
Hpy8I GTNNAC 5 cut(s) 53, 270, 365, 484, 778
HpyAV CCTTC 2 cut(s) 71, 1375
HpyCH4III ACNGT 5 cut(s) 358, 369, 622, 775, 1226
HpyCH4IV ACGT 1 cut(s) 1519
HpyCH4V TGCA 8 cut(s) 478, 551, 617, 640, 701, 1322, 1356, 1423
HpyF10VI GCNNNNNNNGC 6 cut(s) 320, 475, 509, 577, 955, 1121
HpyF3I CTNAG 4 cut(s) 525, 1009, 1044, 1174
HpySE526I ACGT 1 cut(s) 1519
Hsp92II CATG 9 cut(s) 42, 67, 188, 399, 559, 603, 651, 749, 1041
HspAI GCGC 3 cut(s) 189, 210, 427
KroI GCCGGC 1 cut(s) 499
KroNI GCCGGC 1 cut(s) 501
Ksp22I TGATCA 2 cut(s) 298, 414
Kzo9I GATC 3 cut(s) 298, 414, 1136
LmnI GCTCC 5 cut(s) 67, 656, 733, 808, 946
Lsp1109I GCAGC 3 cut(s) 199, 823, 1435
LweI GCATC 3 cut(s) 52, 478, 627
MaeI CTAG 1 cut(s) 800
MaeII ACGT 1 cut(s) 1519
MaeIII GTNAC 1 cut(s) 1220
MalI GATC 3 cut(s) 300, 416, 1138
MboI GATC 3 cut(s) 298, 414, 1136
MflI RGATCY 1 cut(s) 1136
MhlI GDGCHC 1 cut(s) 960
MluCI AATT 6 cut(s) 418, 458, 691, 940, 1445, 1479
MlyI GAGTC 2 cut(s) 122, 1058
MmeI TCCRAC 1 cut(s) 1123
MnlI CCTC 9 cut(s) 95, 194, 637, 775, 1039, 1180, 1342, 1431, 1455
Mph1103I ATGCAT 1 cut(s) 642
MroNI GCCGGC 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 8 cut(s) 17, 60, 567, 690, 836, 974, 1274, 1302
MslI CAYNNNNRTG 1 cut(s) 1068
MspA1I CMGCKG 1 cut(s) 1426
MspCI CTTAAG 1 cut(s) 566
MspI CCGG 2 cut(s) 500, 1129
MvnI CGCG 2 cut(s) 141, 427
MwoI GCNNNNNNNGC 6 cut(s) 320, 475, 509, 577, 955, 1121
NaeI GCCGGC 1 cut(s) 501
NcoI CCATGG 2 cut(s) 184, 647
NdeII GATC 3 cut(s) 298, 414, 1136
NgoMIV GCCGGC 1 cut(s) 499
NlaIII CATG 9 cut(s) 42, 67, 188, 399, 559, 603, 651, 749, 1041
NlaIV GGNNCC 1 cut(s) 404
NsiI ATGCAT 1 cut(s) 642
NspV TTCGAA 1 cut(s) 586
PaqCI CACCTGC 2 cut(s) 469, 901
PdiI GCCGGC 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 5 cut(s) 713, 818, 824, 1237, 1394
PflMI CCANNNNNTGG 1 cut(s) 653
PkrI GCNGC 7 cut(s) 109, 143, 214, 426, 579, 813, 1425
PleI GAGTC 2 cut(s) 122, 1057
PpsI GAGTC 2 cut(s) 122, 1057
Ppu21I YACGTR 1 cut(s) 1520
PsiI TTATAA 1 cut(s) 1473
PspFI CCCAGC 2 cut(s) 659, 1120
PspN4I GGNNCC 1 cut(s) 404
PspPI GGNCC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 480
PsuI RGATCY 1 cut(s) 1136
RsaI GTAC 1 cut(s) 1228
RsaNI GTAC 1 cut(s) 1227
RseI CAYNNNNRTG 1 cut(s) 1068
SaqAI TTAA 8 cut(s) 17, 60, 567, 690, 836, 974, 1274, 1302
SatI GCNGC 7 cut(s) 108, 142, 213, 425, 578, 812, 1424
Sau3AI GATC 3 cut(s) 298, 414, 1136
Sau96I GGNCC 1 cut(s) 157
ScaI AGTACT 1 cut(s) 1228
SchI GAGTC 2 cut(s) 122, 1058
SduI GDGCHC 1 cut(s) 960
SfaNI GCATC 3 cut(s) 52, 478, 627
SfcI CTRYAG 3 cut(s) 476, 705, 771
SfuI TTCGAA 1 cut(s) 586
SmiMI CAYNNNNRTG 1 cut(s) 1068
SmlI CTYRAG 3 cut(s) 566, 572, 953
SmoI CTYRAG 3 cut(s) 566, 572, 953
Sse9I AATT 6 cut(s) 418, 458, 691, 940, 1445, 1479
SsiI CCGC 7 cut(s) 107, 110, 141, 195, 425, 578, 1426
SspMI CTAG 1 cut(s) 800
StyI CCWWGG 3 cut(s) 184, 519, 647
TaaI ACNGT 5 cut(s) 358, 369, 622, 775, 1226
TaiI ACGT 1 cut(s) 1522
TaqI TCGA 3 cut(s) 87, 586, 1455
TasI AATT 6 cut(s) 418, 458, 691, 940, 1445, 1479
TatI WGTACW 1 cut(s) 1226
TauI GCSGC 4 cut(s) 110, 144, 427, 580
TfiI GAWTC 5 cut(s) 713, 818, 824, 1237, 1394
Tru1I TTAA 8 cut(s) 17, 60, 567, 690, 836, 974, 1274, 1302
Tru9I TTAA 8 cut(s) 17, 60, 567, 690, 836, 974, 1274, 1302
TscAI CASTG 1 cut(s) 780
TseI GCWGC 3 cut(s) 212, 811, 1423
TspDTI ATGAA 7 cut(s) 384, 387, 993, 1026, 1247, 1320, 1524
TspGWI ACGGA 1 cut(s) 646
TspRI CASTG 1 cut(s) 780
Van91I CCANNNNNTGG 1 cut(s) 653
Vha464I CTTAAG 1 cut(s) 566
XapI RAATTY 3 cut(s) 458, 940, 1479
XbaI TCTAGA 1 cut(s) 799
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 1 cut(s) 800
ZrmI AGTACT 1 cut(s) 1228
Zsp2I ATGCAT 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.