pycom07g01830

Protein SET DOMAIN GROUP

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
1445583 .. 1446223
641 bp
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UTR
Exon/CDS
Intron
pycom07g01830.2

Sequence Viewer

Length: 309 bp
ATGTATGAGGGAGGAACGGATGCCAAGTTCAAATGCATTTTCACCGGAGATGCTATTTCCTCCTGTAAGAGAAAGACTAAAGTGGGGATATGTTTTCACCAGGGGAGCTGCAACATCCTAGCAACATTTCGTGAATTTGAGAAGCAGCTGTGCAAGTTCAGTTGCGTGGATGATGCGATCTGGGCTGCTGAAAATGCCACATTGAAAGCTGAGATGAGTGGAAAGAAGCTAATGCACTCATGGAACAACTTAAGCTCAACCCTCAGCTTCAGACGTTTCAAGCGTGGCTTTGGGATTCTGCAACTGTGA

Protein Analysis

103

Amino Acids

11.5

Weight (kDa)

9.3

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009980)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 253
AflII CTTAAG 1 cut(s) 250
AgsI TTSAA 3 cut(s) 31, 205, 280
AjnI CCWGG 1 cut(s) 99
AloI GAACNNNNNNTCC 2 cut(s) 11, 43
AluBI AGCT 6 cut(s) 108, 148, 209, 229, 255, 267
AluI AGCT 6 cut(s) 108, 148, 209, 229, 255, 267
ApeKI GCWGC 3 cut(s) 108, 145, 185
ApoI RAATTY 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 34, 89
BbvCI CCTCAGC 1 cut(s) 263
BbvI GCAGC 3 cut(s) 95, 157, 172
BciT130I CCWGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 119
BfrI CTTAAG 1 cut(s) 250
BisI GCNGC 3 cut(s) 109, 146, 186
BlsI GCNGC 3 cut(s) 110, 147, 187
Bme1390I CCNGG 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 3 cut(s) 10, 40, 163
Bpu10I CCTNAGC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 44
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 3 cut(s) 25, 114, 175
BseMII CTCAG 2 cut(s) 201, 277
BseXI GCAGC 3 cut(s) 95, 157, 172
BsiSI CCGG 1 cut(s) 45
Bsp143I GATC 1 cut(s) 177
BspCNI CTCAG 2 cut(s) 202, 276
BspTI CTTAAG 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 306
BstAFI CTTAAG 1 cut(s) 250
BstDEI CTNAG 2 cut(s) 210, 263
BstF5I GGATG 3 cut(s) 25, 114, 175
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 2 cut(s) 182, 194
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 95, 157, 172
BtsCI GGATG 3 cut(s) 25, 114, 175
CviAII CATG 1 cut(s) 240
CviJI RGCY 8 cut(s) 108, 148, 185, 209, 229, 255, 267, 288
CviKI_1 RGCY 8 cut(s) 108, 148, 185, 209, 229, 255, 267, 288
DdeI CTNAG 2 cut(s) 210, 263
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 99
EcoT22I ATGCAT 1 cut(s) 38
FaeI CATG 1 cut(s) 243
FaiI YATR 3 cut(s) 6, 91, 241
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 1 cut(s) 239
Fnu4HI GCNGC 3 cut(s) 109, 146, 186
FokI GGATG 3 cut(s) 32, 101, 182
Fsp4HI GCNGC 3 cut(s) 109, 146, 186
FspBI CTAG 1 cut(s) 119
GluI GCNGC 3 cut(s) 109, 146, 186
HapII CCGG 1 cut(s) 45
Hin1II CATG 1 cut(s) 243
HinfI GANTC 1 cut(s) 295
HpaII CCGG 1 cut(s) 45
HphI GGTGA 2 cut(s) 34, 89
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 5 cut(s) 36, 111, 153, 235, 301
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 194
HpyF3I CTNAG 2 cut(s) 210, 263
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 1 cut(s) 243
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 5 cut(s) 58, 76, 86, 113, 166
Lsp1109I GCAGC 3 cut(s) 95, 157, 172
LweI GCATC 3 cut(s) 10, 40, 163
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 274
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MluCI AATT 1 cut(s) 134
MnlI CCTC 3 cut(s) 5, 70, 272
Mph1103I ATGCAT 1 cut(s) 38
MseI TTAA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 148
MspCI CTTAAG 1 cut(s) 250
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 182, 194
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 243
NsiI ATGCAT 1 cut(s) 38
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 3 cut(s) 110, 147, 187
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 148
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 3 cut(s) 109, 146, 186
Sau3AI GATC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 101
SetI ASST 7 cut(s) 110, 150, 211, 231, 257, 269, 277
SfaNI GCATC 3 cut(s) 10, 40, 163
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 1 cut(s) 134
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 306
TaiI ACGT 1 cut(s) 277
TasI AATT 1 cut(s) 134
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TseI GCWGC 3 cut(s) 108, 145, 185
TspGWI ACGGA 1 cut(s) 32
Vha464I CTTAAG 1 cut(s) 250
XapI RAATTY 1 cut(s) 134
XspI CTAG 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.