RLG00000022939

Protein SET DOMAIN GROUP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009980
Physical Location & Seq
Forward (+)
15460159 .. 15464971
4813 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022939

Sequence Viewer

Length: 1488 bp
ATGGAGCAAGAAGAAGGCGACCTCGAAAGGCTTCTGAAATGGGCGGCGGAGTTTGGGATATCAGACTCAAAATGTGGCGGGCTTTCGTGTTTGGGTCACTCTCTCGTCGTCTCCTACTTCCATGGCGCAGGCGGGAGAGGTTTGGGCGCTGCTCGTGATCTTGAAAAAGGAGAGTTAGTTCTCAAAGTTCCAAAATCGGCTCTGTTTACAAGGGAAAGTCTGTTGTTGAAAGATGATCAACTCTCTGTTGCTGTCAATGCCCATAGCTCTCTCTCCCCTACCCAGACATTGACGGTTTGTTTACTGTATGAAATGGGTAAAGGGAAGACTTCATGGTGGCACCCTTACCTGATCAATTTGCCGCGCAGTTATGACATTATAGCAACGTTTGGTGAATTTGAGAAGCAAGCTCTGCAGGTGGACGATGCTATCTGGGCTGCTGATAAGGCCATTTCCAAGGCTCAGTTTGAGTGGAAAGAGACCAATGCACTCATGGAACAACTTAAGCTCAAGCCGCAACTTCGAACATTTAGGGCATGGCTTTGGGCTTCTGCAACTGTATCCTCACGGACGATGCATATACCATGGGATGGAGCTGGGTGTTTATGTCCTGTGGGAGACTTGTTTAATTATTCTGCACCTGTAGAAGAATCTGATTTTGAAAATATGGAGCATAGAACACATGACTTGGCCTTACAGGATATCTCTACAGTGAACGAGGAAACTTCATGTATTCTAGATATGGAGCAGCTTGATTCTGATTCGGGAAGATTAACTGATGGCAGGTTTGAGAACGATGGCGGGGCATATTGCTTCTATGCGAAGAAAAGTTATAGAAAAGGAGAGCAGGTACTTTTGAGCTATGGAACATACACAAATTTGGAGCTTCTTGAGCACTATGGCTTTCTCTTAAATGAAAATCCAAACGACAAAGTTTTTATTCCCTTAGAACCAGAAATATATTCCTCTTGTTCATGGCCTAAGGAGTCCTTATATATCCATCAAAGTGGAAAGCCGTCTTTTGCTCTACTTTCGGCTCTGCGATTATGGGCAACCCCAGCAAACCGGCGAAGATCTGTTGGACACCTTGCTTATTCAGGGCTTCAACTCTCAGTTGAAAATGAGGTATTTGTTATGAGATGGATTTCAAACAAGTGTAACAGTACTATGAAGAATCTGCCAACAACTTTTGAAGAAGATAGTCTTCTATTAAGTGTCATTGACAAAATCCAAAATGTTAATGGCCCTTTGGAGTTTGCAAATGATTCATCTGTATCAACAGATGAGATTTGTACTTTTAGGGCTAATGCTTTGAAGAAGGGAGAAACAGATTCCAAAGCACTTGTGTCAGGGAAAATGCAGCGGTCAAGGGAGAGGTGGAAATTAGCTGTTGAGTGGAGGCTTGGTTATAAGAAAATTCTAGTTGATTGTATTTCTTTCTGTGATGAAATGATACGTGTTCTATGTTCTCAAATATCTCATTCCTAA

Protein Analysis

496

Amino Acids

55.73

Weight (kDa)

5.45

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rubis-subs-bind PF09273 337 - 474 1e-05 Rubisco LSMT substrate-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17240 AT5G17240
fragaria_vesca FvH4_1g27420
malus_domestica MD07G1015500.v1.1 MD17G1287300.v1.1
prunus_persica Prupe.3G014000_v2.0.a1
pyrus_communis pycom07g01180 pycom07g01780 pycom07g01830 pycom07g01860
rosa_chinensis RchiOBHm_Chr3g0488621
rosa_laevigata RLG00000022939
rosa_multiflora Rmu_sc0005363.1_g000050
rosa_roxburghii Rroxscaffold_6G00394090
rosa_rugosa Rorug03G0239700 Rorug03G0239800
rosa_samantha Rh3AG288600 Rh3BG325300 Rh3CG322900 Rh3DG321600
rosa_wichuraiana Rw3G025540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1410
AarI CACCTGC 1 cut(s) 406
Acc36I ACCTGC 3 cut(s) 406, 774, 838
AccB1I GGYRCC 1 cut(s) 339
AccB7I CCANNNNNTGG 1 cut(s) 590
AccII CGCG 1 cut(s) 364
AciI CCGC 8 cut(s) 44, 47, 78, 132, 362, 515, 801, 1363
AclI AACGTT 1 cut(s) 386
AcsI RAATTY 3 cut(s) 395, 877, 1416
AfaI GTAC 3 cut(s) 852, 1165, 1294
AfiI CCNNNNNNNGG 1 cut(s) 590
AflII CTTAAG 1 cut(s) 503
AflIII ACRYGT 1 cut(s) 1456
AgsI TTSAA 8 cut(s) 164, 229, 662, 1106, 1118, 1149, 1193, 1315
AloI GAACNNNNNNTCC 2 cut(s) 162, 194
AluBI AGCT 8 cut(s) 267, 410, 508, 596, 751, 861, 886, 1388
AluI AGCT 8 cut(s) 267, 410, 508, 596, 751, 861, 886, 1388
Alw21I GWGCWC 1 cut(s) 897
Alw26I GTCTC 3 cut(s) 115, 473, 612
AoxI GGCC 4 cut(s) 447, 690, 977, 1243
ApeKI GCWGC 4 cut(s) 149, 437, 748, 1360
ApoI RAATTY 3 cut(s) 395, 877, 1416
Asp700I GAANNNNTTC 1 cut(s) 30
AspLEI GCGC 3 cut(s) 128, 149, 366
AspS9I GGNCC 1 cut(s) 1244
AsuHPI GGTGA 1 cut(s) 404
AsuII TTCGAA 1 cut(s) 523
AxyI CCTNAGG 1 cut(s) 981
BanI GGYRCC 1 cut(s) 339
BauI CACGAG 1 cut(s) 153
BbsI GAAGAC 2 cut(s) 332, 1196
Bbv12I GWGCWC 1 cut(s) 897
BbvI GCAGC 4 cut(s) 136, 424, 760, 1372
BccI CCATC 5 cut(s) 584, 773, 791, 1008, 1134
BceAI ACGGC 1 cut(s) 1000
BciVI GTATCC 1 cut(s) 571
BclI TGATCA 2 cut(s) 235, 351
BcoDI GTCTC 3 cut(s) 115, 473, 612
BfaI CTAG 2 cut(s) 737, 1421
BfmI CTRYAG 3 cut(s) 413, 642, 708
BfoI RGCGCY 1 cut(s) 150
BfrI CTTAAG 1 cut(s) 503
BfuAI ACCTGC 3 cut(s) 406, 774, 838
BfuI GTATCC 1 cut(s) 571
BglII AGATCT 1 cut(s) 1073
BisI GCNGC 7 cut(s) 45, 150, 362, 438, 515, 749, 1361
BlsI GCNGC 7 cut(s) 46, 151, 363, 439, 516, 750, 1362
BmcAI AGTACT 1 cut(s) 1165
BmgT120I GGNCC 1 cut(s) 1244
BmiI GGNNCC 1 cut(s) 341
BmsI GCATC 2 cut(s) 415, 564
BpiI GAAGAC 2 cut(s) 332, 1196
Bpu14I TTCGAA 1 cut(s) 523
BpuEI CTTGAG 2 cut(s) 494, 911
BsaAI YACGTR 1 cut(s) 1457
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 3 cut(s) 121, 456, 584
BsaXI ACNNNNNCTCC 6 cut(s) 162, 192, 834, 864, 1390, 1420
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse118I RCCGGY 1 cut(s) 1065
Bse21I CCTNAGG 1 cut(s) 981
BseDI CCNNGG 3 cut(s) 121, 456, 584
BseGI GGATG 1 cut(s) 595
BseLI CCNNNNNNNGG 1 cut(s) 590
BseMII CTCAG 2 cut(s) 476, 1125
BseXI GCAGC 4 cut(s) 136, 424, 760, 1372
BseYI CCCAGC 2 cut(s) 596, 1057
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 1 cut(s) 364
BshFI GGCC 4 cut(s) 449, 692, 979, 1245
BshNI GGYRCC 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 897
BsiSI CCGG 1 cut(s) 1066
BslI CCNNNNNNNGG 1 cut(s) 590
BsmAI GTCTC 3 cut(s) 115, 473, 612
BsmBI CGTCTC 1 cut(s) 115
BsnI GGCC 4 cut(s) 449, 692, 979, 1245
Bso31I GGTCTC 1 cut(s) 473
Bsp119I TTCGAA 1 cut(s) 523
Bsp1286I GDGCHC 1 cut(s) 897
Bsp143I GATC 4 cut(s) 157, 235, 351, 1073
Bsp19I CCATGG 2 cut(s) 121, 584
BspACI CCGC 8 cut(s) 44, 47, 78, 132, 362, 515, 801, 1363
BspANI GGCC 4 cut(s) 449, 692, 979, 1245
BspCNI CTCAG 2 cut(s) 475, 1124
BspFNI CGCG 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 341
BspMAI CTGCAG 1 cut(s) 417
BspMI ACCTGC 3 cut(s) 406, 774, 838
BspT104I TTCGAA 1 cut(s) 523
BspT107I GGYRCC 1 cut(s) 339
BspTI CTTAAG 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 473
BsrFI RCCGGY 1 cut(s) 1065
BssAI RCCGGY 1 cut(s) 1065
BssECI CCNNGG 3 cut(s) 121, 456, 584
BssMI GATC 4 cut(s) 157, 235, 351, 1073
BssSI CACGAG 1 cut(s) 153
BssT1I CCWWGG 3 cut(s) 121, 456, 584
Bst2BI CACGAG 1 cut(s) 153
Bst4CI ACNGT 5 cut(s) 295, 306, 559, 712, 1163
BstAFI CTTAAG 1 cut(s) 503
BstAPI GCANNNNNTGC 1 cut(s) 412
BstBAI YACGTR 1 cut(s) 1457
BstBI TTCGAA 1 cut(s) 523
BstC8I GCNNGC 3 cut(s) 80, 130, 408
BstDEI CTNAG 4 cut(s) 462, 946, 981, 1111
BstDSI CCRYGG 2 cut(s) 121, 584
BstF5I GGATG 1 cut(s) 595
BstFNI CGCG 1 cut(s) 364
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 3 cut(s) 128, 149, 366
BstKTI GATC 4 cut(s) 160, 238, 354, 1076
BstMAI GTCTC 3 cut(s) 115, 473, 612
BstMBI GATC 4 cut(s) 157, 235, 351, 1073
BstMWI GCNNNNNNNGC 7 cut(s) 257, 412, 434, 446, 514, 892, 1058
BstSFI CTRYAG 3 cut(s) 413, 642, 708
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 4 cut(s) 136, 424, 760, 1372
BstV2I GAAGAC 2 cut(s) 332, 1196
BstX2I RGATCY 1 cut(s) 1073
BstXI CCANNNNNNTGG 1 cut(s) 1007
BstYI RGATCY 1 cut(s) 1073
Bsu36I CCTNAGG 1 cut(s) 981
BsuI GTATCC 1 cut(s) 571
BsuRI GGCC 4 cut(s) 449, 692, 979, 1245
BtgI CCRYGG 2 cut(s) 121, 584
BtsCI GGATG 1 cut(s) 595
BtsIMutI CAGTG 1 cut(s) 717
BveI ACCTGC 3 cut(s) 406, 774, 838
Cac8I GCNNGC 3 cut(s) 80, 130, 408
CfoI GCGC 3 cut(s) 128, 149, 366
Cfr10I RCCGGY 1 cut(s) 1065
Cfr13I GGNCC 1 cut(s) 1244
Csp6I GTAC 3 cut(s) 851, 1164, 1293
CviAII CATG 8 cut(s) 122, 333, 493, 537, 585, 683, 729, 975
CviQI GTAC 3 cut(s) 851, 1164, 1293
DdeI CTNAG 4 cut(s) 462, 946, 981, 1111
DpnI GATC 4 cut(s) 159, 237, 353, 1075
DpnII GATC 4 cut(s) 157, 235, 351, 1073
EciI GGCGGA 1 cut(s) 62
Eco130I CCWWGG 3 cut(s) 121, 456, 584
Eco31I GGTCTC 1 cut(s) 473
Eco32I GATATC 2 cut(s) 60, 703
Eco81I CCTNAGG 1 cut(s) 981
EcoRV GATATC 2 cut(s) 60, 703
EcoT14I CCWWGG 3 cut(s) 121, 456, 584
EcoT22I ATGCAT 1 cut(s) 579
ErhI CCWWGG 3 cut(s) 121, 456, 584
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 8 cut(s) 125, 336, 496, 540, 588, 686, 732, 978
FalI AAGNNNNNCTT 4 cut(s) 974, 1006, 1188, 1220
FatI CATG 8 cut(s) 121, 332, 492, 536, 584, 682, 728, 974
FauI CCCGC 3 cut(s) 71, 125, 794
FbaI TGATCA 2 cut(s) 235, 351
Fnu4HI GCNGC 7 cut(s) 45, 150, 362, 438, 515, 749, 1361
FokI GGATG 1 cut(s) 602
Fsp4HI GCNGC 7 cut(s) 45, 150, 362, 438, 515, 749, 1361
FspBI CTAG 2 cut(s) 737, 1421
GlaI GCGC 3 cut(s) 127, 148, 365
GluI GCNGC 7 cut(s) 45, 150, 362, 438, 515, 749, 1361
GsaI CCCAGC 2 cut(s) 600, 1061
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 4 cut(s) 449, 692, 979, 1245
HapII CCGG 1 cut(s) 1066
HhaI GCGC 3 cut(s) 128, 149, 366
Hin1II CATG 8 cut(s) 125, 336, 496, 540, 588, 686, 732, 978
Hin6I GCGC 3 cut(s) 126, 147, 364
HinP1I GCGC 3 cut(s) 126, 147, 364
HinfI GANTC 8 cut(s) 65, 650, 755, 761, 986, 1174, 1265, 1331
HpaII CCGG 1 cut(s) 1066
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 4 cut(s) 207, 302, 421, 715
Hpy188I TCNGA 4 cut(s) 36, 64, 655, 760
Hpy188III TCNNGA 5 cut(s) 155, 161, 737, 765, 890
Hpy8I GTNNAC 4 cut(s) 207, 302, 421, 715
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 8, 1312
HpyCH4III ACNGT 5 cut(s) 295, 306, 559, 712, 1163
HpyCH4IV ACGT 2 cut(s) 386, 1456
HpyCH4V TGCA 7 cut(s) 415, 488, 554, 577, 638, 1259, 1360
HpyF10VI GCNNNNNNNGC 7 cut(s) 257, 412, 434, 446, 514, 892, 1058
HpyF3I CTNAG 4 cut(s) 462, 946, 981, 1111
HpySE526I ACGT 2 cut(s) 386, 1456
Hsp92II CATG 8 cut(s) 125, 336, 496, 540, 588, 686, 732, 978
HspAI GCGC 3 cut(s) 126, 147, 364
Ksp22I TGATCA 2 cut(s) 235, 351
Kzo9I GATC 4 cut(s) 157, 235, 351, 1073
LmnI GCTCC 5 cut(s) 4, 593, 670, 745, 883
Lsp1109I GCAGC 4 cut(s) 136, 424, 760, 1372
LweI GCATC 2 cut(s) 415, 564
MaeI CTAG 2 cut(s) 737, 1421
MaeII ACGT 2 cut(s) 386, 1456
MaeIII GTNAC 2 cut(s) 95, 1157
MalI GATC 4 cut(s) 159, 237, 353, 1075
MboI GATC 4 cut(s) 157, 235, 351, 1073
MflI RGATCY 1 cut(s) 1073
MhlI GDGCHC 1 cut(s) 897
MluCI AATT 6 cut(s) 355, 395, 628, 877, 1382, 1416
MlyI GAGTC 2 cut(s) 59, 995
MmeI TCCRAC 1 cut(s) 1060
MnlI CCTC 8 cut(s) 32, 131, 574, 712, 976, 1117, 1368, 1392
Mph1103I ATGCAT 1 cut(s) 579
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 6 cut(s) 504, 627, 773, 911, 1211, 1239
MslI CAYNNNNRTG 1 cut(s) 1005
MspA1I CMGCKG 1 cut(s) 1363
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 1 cut(s) 1066
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 7 cut(s) 257, 412, 434, 446, 514, 892, 1058
NcoI CCATGG 2 cut(s) 121, 584
NdeII GATC 4 cut(s) 157, 235, 351, 1073
NlaIII CATG 8 cut(s) 125, 336, 496, 540, 588, 686, 732, 978
NlaIV GGNNCC 1 cut(s) 341
NmuCI GTSAC 1 cut(s) 95
NsiI ATGCAT 1 cut(s) 579
NspV TTCGAA 1 cut(s) 523
PaqCI CACCTGC 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 6 cut(s) 650, 755, 761, 1174, 1265, 1331
PflMI CCANNNNNTGG 1 cut(s) 590
PkrI GCNGC 7 cut(s) 46, 151, 363, 439, 516, 750, 1362
PleI GAGTC 2 cut(s) 59, 994
PpsI GAGTC 2 cut(s) 59, 994
Ppu21I YACGTR 1 cut(s) 1457
PsiI TTATAA 1 cut(s) 1410
Psp1406I AACGTT 1 cut(s) 386
PspFI CCCAGC 2 cut(s) 596, 1057
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 1 cut(s) 1244
PstI CTGCAG 1 cut(s) 417
PsuI RGATCY 1 cut(s) 1073
RsaI GTAC 3 cut(s) 852, 1165, 1294
RsaNI GTAC 3 cut(s) 851, 1164, 1293
RseI CAYNNNNRTG 1 cut(s) 1005
SaqAI TTAA 6 cut(s) 504, 627, 773, 911, 1211, 1239
SatI GCNGC 7 cut(s) 45, 150, 362, 438, 515, 749, 1361
Sau3AI GATC 4 cut(s) 157, 235, 351, 1073
Sau96I GGNCC 1 cut(s) 1244
ScaI AGTACT 1 cut(s) 1165
SchI GAGTC 2 cut(s) 59, 995
SduI GDGCHC 1 cut(s) 897
SfaNI GCATC 2 cut(s) 415, 564
SfcI CTRYAG 3 cut(s) 413, 642, 708
SfuI TTCGAA 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 1005
SmlI CTYRAG 3 cut(s) 503, 509, 890
SmoI CTYRAG 3 cut(s) 503, 509, 890
Sse9I AATT 6 cut(s) 355, 395, 628, 877, 1382, 1416
SsiI CCGC 8 cut(s) 44, 47, 78, 132, 362, 515, 801, 1363
SspMI CTAG 2 cut(s) 737, 1421
StyI CCWWGG 3 cut(s) 121, 456, 584
TaaI ACNGT 5 cut(s) 295, 306, 559, 712, 1163
TaiI ACGT 2 cut(s) 389, 1459
TaqI TCGA 2 cut(s) 24, 523
TasI AATT 6 cut(s) 355, 395, 628, 877, 1382, 1416
TatI WGTACW 2 cut(s) 1163, 1292
TauI GCSGC 3 cut(s) 47, 364, 517
TfiI GAWTC 6 cut(s) 650, 755, 761, 1174, 1265, 1331
Tru1I TTAA 6 cut(s) 504, 627, 773, 911, 1211, 1239
Tru9I TTAA 6 cut(s) 504, 627, 773, 911, 1211, 1239
TscAI CASTG 1 cut(s) 717
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 4 cut(s) 149, 437, 748, 1360
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 8 cut(s) 321, 324, 717, 930, 963, 1184, 1257, 1461
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 1 cut(s) 717
Van91I CCANNNNNTGG 1 cut(s) 590
Vha464I CTTAAG 1 cut(s) 503
XapI RAATTY 3 cut(s) 395, 877, 1416
XbaI TCTAGA 1 cut(s) 736
XcmI CCANNNNNNNNNTGG 2 cut(s) 490, 1238
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 2 cut(s) 737, 1421
ZrmI AGTACT 1 cut(s) 1165
Zsp2I ATGCAT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.