FvH4_1g27420

Protein SET DOMAIN GROUP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009980
Physical Location & Seq
Forward (+)
19109142 .. 19114936
5795 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27420.t1

Sequence Viewer

Length: 1536 bp
ATGAGTTTTGTGAGCTTCAACGACATGAAGTATAACCATGGTGGCATGACTGGCATCAGACTAGACATGGAGGAAGAAGAAGGCAACCTCGAAAGTCTTCTTAAATGGGCAGCGGTGTTCGGGATATCAGACTCGAAATCTCTCGTCGTCTCCTACTTCCATGGCGCAGGCGGGAGAGGTTTGGGGGCTGCTCGTGATCTTGAAAAAGGAGAGTTGGTTCTCAAAGTTCCGAAGTCGGCTCTGATCACAAGGGAAACTCTGTTACTGAAAGATGATCATCTCTCTCTTGCTGTCAATGCCCATACTTCTCTCTCCCCTATCCAGACATTGTGTGTTTGTTTACTCTATGAAATGGGTAAAGGGAAGACTTCATGGTGGTACCCTTACCTCATCAATTTACCTCGAAGTTACGACATTATAGCAACATTTGGTGAATTTGAGAAGCAAGCTCTGCAGGTGGAGGATGCTATCTGGGCTGCTGATAAGGCCATTTCCAAGGCTGAGTTTGAGTGGAAAGAAACCAATACCCTCATGGAACAACTTAAGCTCAAGCCGCAACTTCGAACATTCAGGGCATGGCTTTGGGCTTCTGCGACTGTATCCTCACGGACGTTGCATATACCATGGGATGGAGCTGGGTGTTTATGTCCTGTGGGAGACTTGTTCAATTATTCTGCACCTGTAGAAGATTCTGATTCTGACAATGTGGAGCTTAGAACACATGAATTGGCCTTACAGGATATGACTACAGTGAAGGAGGAAACTTCTTGTATACTAGATAATGAGCAGCTTGATTCTGATTCGGGAAGATTAACTGATGGTAGGTTTGAGAATAATGTTGGTGCATATTGCTTCTATGCGAAGAAAAGTTACAGAAAAGGAGAGCAGGTCCTGCTGAGCTATGGAACGTACACAAATTTGGAGCTTCTTGAGCACTATGGCTTTCTCTTAAATGAAAATCCAAATGACAAAGCTTATGTTCCCTTAGAACCAGAAATTTACTCATCTTGTTCATGGCCTAAGGAGTTCCTGTATATCCATCAAAGTGGAAAGCCGTCTTTTGCTCTACTTTCGGCTCTGCGATTATGGGCAACCCCAGCAAACCGGCGAAGATCTGTTGGACACCTTGCTTATTCAGGGCTCCAACTTTCTATTGAAAATGAGATATTTGTTATGAGATGGATTTCAAACAAGTGTAACAGTATTGTGAAGAATCTGCCAACAACGTTTGAAGAAGATAGTCTTCTATTAAGTGTCATTGACAAAATCCAAAATGTTAACGCCCCTTTGGAGTTTGCCAATATTTCATCTGTATCAACAGATGAGATTTGTACTTATAGGGCTGAAGTTTTGAAGAAGGGAGCAACAGATTCTGAAACAGTTGTTTCAAGGAAAACTATGCAGCGGTCAAGGGAGAGGTGGAGATTAGCTGTTCAGTGGAGGCTTAGTTATAAGAAAATTCTGGTTGATTGTATTTCTTTTTGTGATGAAATGATAGATGTACTACGTTCTCAACCATCTCATACCCAGAGCTGA

Protein Analysis

512

Amino Acids

57.89

Weight (kDa)

5.48

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rubis-subs-bind PF09273 349 - 488 7.6e-06 Rubisco LSMT substrate-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17240 AT5G17240
fragaria_vesca FvH4_1g27420
malus_domestica MD07G1015500.v1.1 MD17G1287300.v1.1
prunus_persica Prupe.3G014000_v2.0.a1
pyrus_communis pycom07g01180 pycom07g01780 pycom07g01830 pycom07g01860
rosa_chinensis RchiOBHm_Chr3g0488621
rosa_laevigata RLG00000022939
rosa_multiflora Rmu_sc0005363.1_g000050
rosa_roxburghii Rroxscaffold_6G00394090
rosa_rugosa Rorug03G0239700 Rorug03G0239800
rosa_samantha Rh3AG288600 Rh3BG325300 Rh3CG322900 Rh3DG321600
rosa_wichuraiana Rw3G025540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1452
AarI CACCTGC 1 cut(s) 445
Acc36I ACCTGC 2 cut(s) 445, 877
Acc65I GGTACC 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 378
AccB7I CCANNNNNTGG 1 cut(s) 629
AccI GTMKAC 1 cut(s) 772
AciI CCGC 4 cut(s) 113, 171, 554, 1405
AclI AACGTT 1 cut(s) 1226
AcsI RAATTY 4 cut(s) 434, 916, 996, 1458
AcuI CTGAAG 1 cut(s) 1365
AfaI GTAC 4 cut(s) 380, 911, 1333, 1503
AfiI CCNNNNNNNGG 1 cut(s) 629
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 8 cut(s) 19, 203, 667, 1157, 1188, 1232, 1354, 1389
AloI GAACNNNNNNTCC 2 cut(s) 201, 233
Alw21I GWGCWC 1 cut(s) 936
Alw26I GTCTC 2 cut(s) 154, 651
AlwNI CAGNNNCTG 2 cut(s) 892, 1373
AoxI GGCC 3 cut(s) 486, 729, 1016
ApeKI GCWGC 5 cut(s) 110, 188, 476, 787, 1402
ApoI RAATTY 4 cut(s) 434, 916, 996, 1458
Asp700I GAANNNNTTC 1 cut(s) 96
Asp718I GGTACC 1 cut(s) 378
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 889
AsuHPI GGTGA 1 cut(s) 443
AsuII TTCGAA 1 cut(s) 562
AvaII GGWCC 1 cut(s) 889
AxyI CCTNAGG 1 cut(s) 1020
BanI GGYRCC 1 cut(s) 378
BanII GRGCYC 1 cut(s) 1143
BarI GAAGNNNNNNTAC 2 cut(s) 854, 886
BauI CACGAG 1 cut(s) 192
BbsI GAAGAC 3 cut(s) 89, 371, 1235
Bbv12I GWGCWC 1 cut(s) 936
BbvI GCAGC 5 cut(s) 122, 175, 463, 799, 1414
BccI CCATC 5 cut(s) 623, 812, 1047, 1173, 1525
BceAI ACGGC 1 cut(s) 1039
BciVI GTATCC 1 cut(s) 610
BclI TGATCA 2 cut(s) 243, 274
BcoDI GTCTC 2 cut(s) 154, 651
BfaI CTAG 2 cut(s) 62, 776
BfmI CTRYAG 3 cut(s) 452, 681, 747
BfrI CTTAAG 1 cut(s) 542
BfuAI ACCTGC 2 cut(s) 445, 877
BfuI GTATCC 1 cut(s) 610
BglII AGATCT 1 cut(s) 1112
BisI GCNGC 6 cut(s) 111, 189, 477, 554, 788, 1403
BlpI GCTNAGC 1 cut(s) 896
BlsI GCNGC 6 cut(s) 112, 190, 478, 555, 789, 1404
Bme18I GGWCC 1 cut(s) 889
BmgT120I GGNCC 1 cut(s) 889
BmiI GGNNCC 2 cut(s) 380, 1142
BmsI GCATC 2 cut(s) 63, 454
BpiI GAAGAC 3 cut(s) 89, 371, 1235
Bpu1102I GCTNAGC 1 cut(s) 896
Bpu14I TTCGAA 1 cut(s) 562
BpuEI CTTGAG 2 cut(s) 533, 950
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 4 cut(s) 37, 160, 495, 623
BsaXI ACNNNNNCTCC 8 cut(s) 201, 231, 873, 903, 1016, 1046, 1432, 1462
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse118I RCCGGY 1 cut(s) 1104
Bse1I ACTGG 1 cut(s) 55
Bse21I CCTNAGG 1 cut(s) 1020
Bse8I GATNNNNATC 1 cut(s) 276
BseDI CCNNGG 4 cut(s) 37, 160, 495, 623
BseGI GGATG 2 cut(s) 469, 634
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 492, 887
BseNI ACTGG 1 cut(s) 55
BseXI GCAGC 5 cut(s) 122, 175, 463, 799, 1414
BseYI CCCAGC 2 cut(s) 635, 1096
BsgI GTGCAG 1 cut(s) 660
BshFI GGCC 3 cut(s) 488, 731, 1018
BshNI GGYRCC 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 936
BsiSI CCGG 1 cut(s) 1105
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 2 cut(s) 154, 651
BsmBI CGTCTC 1 cut(s) 154
BsnI GGCC 3 cut(s) 488, 731, 1018
Bsp119I TTCGAA 1 cut(s) 562
Bsp1286I GDGCHC 2 cut(s) 936, 1143
Bsp143I GATC 4 cut(s) 196, 243, 274, 1112
Bsp1720I GCTNAGC 1 cut(s) 896
Bsp19I CCATGG 3 cut(s) 37, 160, 623
BspACI CCGC 4 cut(s) 113, 171, 554, 1405
BspANI GGCC 3 cut(s) 488, 731, 1018
BspCNI CTCAG 2 cut(s) 493, 888
BspLI GGNNCC 2 cut(s) 380, 1142
BspMAI CTGCAG 1 cut(s) 456
BspMI ACCTGC 2 cut(s) 445, 877
BspT104I TTCGAA 1 cut(s) 562
BspT107I GGYRCC 1 cut(s) 378
BspTI CTTAAG 1 cut(s) 542
BsrFI RCCGGY 1 cut(s) 1104
BsrI ACTGG 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 1104
BssECI CCNNGG 4 cut(s) 37, 160, 495, 623
BssMI GATC 4 cut(s) 196, 243, 274, 1112
BssNAI GTATAC 1 cut(s) 773
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 4 cut(s) 37, 160, 495, 623
Bst1107I GTATAC 1 cut(s) 773
Bst2BI CACGAG 1 cut(s) 192
Bst4CI ACNGT 4 cut(s) 598, 751, 1202, 1381
BstAFI CTTAAG 1 cut(s) 542
BstAPI GCANNNNNTGC 2 cut(s) 451, 892
BstBI TTCGAA 1 cut(s) 562
BstC8I GCNNGC 2 cut(s) 169, 447
BstDEI CTNAG 6 cut(s) 501, 713, 896, 985, 1020, 1445
BstDSI CCRYGG 3 cut(s) 37, 160, 623
BstF5I GGATG 2 cut(s) 469, 634
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 4 cut(s) 199, 246, 277, 1115
BstMAI GTCTC 2 cut(s) 154, 651
BstMBI GATC 4 cut(s) 196, 243, 274, 1112
BstMWI GCNNNNNNNGC 9 cut(s) 51, 296, 451, 473, 485, 553, 892, 931, 1097
BstSFI CTRYAG 3 cut(s) 452, 681, 747
BstV1I GCAGC 5 cut(s) 122, 175, 463, 799, 1414
BstV2I GAAGAC 3 cut(s) 89, 371, 1235
BstX2I RGATCY 1 cut(s) 1112
BstXI CCANNNNNNTGG 1 cut(s) 1046
BstYI RGATCY 1 cut(s) 1112
BstZ17I GTATAC 1 cut(s) 773
Bsu36I CCTNAGG 1 cut(s) 1020
BsuI GTATCC 1 cut(s) 610
BsuRI GGCC 3 cut(s) 488, 731, 1018
BtgI CCRYGG 3 cut(s) 37, 160, 623
BtsCI GGATG 2 cut(s) 469, 634
BtsIMutI CAGTG 2 cut(s) 756, 1442
BveI ACCTGC 2 cut(s) 445, 877
Cac8I GCNNGC 2 cut(s) 169, 447
CaiI CAGNNNCTG 2 cut(s) 892, 1373
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 1104
Cfr13I GGNCC 1 cut(s) 889
Csp6I GTAC 4 cut(s) 379, 910, 1332, 1502
CviQI GTAC 4 cut(s) 379, 910, 1332, 1502
DdeI CTNAG 6 cut(s) 501, 713, 896, 985, 1020, 1445
DpnI GATC 4 cut(s) 198, 245, 276, 1114
DpnII GATC 4 cut(s) 196, 243, 274, 1112
Eco130I CCWWGG 4 cut(s) 37, 160, 495, 623
Eco24I GRGCYC 1 cut(s) 1143
Eco32I GATATC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 889
Eco57I CTGAAG 1 cut(s) 1365
Eco81I CCTNAGG 1 cut(s) 1020
EcoO109I RGGNCCY 1 cut(s) 889
EcoRV GATATC 1 cut(s) 126
EcoT14I CCWWGG 4 cut(s) 37, 160, 495, 623
EcoT38I GRGCYC 1 cut(s) 1143
ErhI CCWWGG 4 cut(s) 37, 160, 495, 623
Esp3I CGTCTC 1 cut(s) 154
FalI AAGNNNNNCTT 2 cut(s) 1227, 1259
FauI CCCGC 1 cut(s) 164
FbaI TGATCA 2 cut(s) 243, 274
FblI GTMKAC 1 cut(s) 772
Fnu4HI GCNGC 6 cut(s) 111, 189, 477, 554, 788, 1403
FokI GGATG 2 cut(s) 476, 641
FriOI GRGCYC 1 cut(s) 1143
Fsp4HI GCNGC 6 cut(s) 111, 189, 477, 554, 788, 1403
FspBI CTAG 2 cut(s) 62, 776
GlaI GCGC 1 cut(s) 166
GluI GCNGC 6 cut(s) 111, 189, 477, 554, 788, 1403
GsaI CCCAGC 2 cut(s) 639, 1100
HaeIII GGCC 3 cut(s) 488, 731, 1018
HapII CCGG 1 cut(s) 1105
HhaI GCGC 1 cut(s) 167
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 1279
HindII GTYRAC 1 cut(s) 1279
HindIII AAGCTT 1 cut(s) 972
HinfI GANTC 7 cut(s) 131, 689, 695, 794, 800, 1213, 1370
HpaI GTTAAC 1 cut(s) 1279
HpaII CCGG 1 cut(s) 1105
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 4 cut(s) 341, 773, 912, 1279
Hpy188I TCNGA 8 cut(s) 59, 130, 231, 243, 694, 700, 799, 1375
Hpy188III TCNNGA 6 cut(s) 121, 194, 200, 322, 804, 929
Hpy8I GTNNAC 4 cut(s) 341, 773, 912, 1279
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 3 cut(s) 74, 748, 1351
HpyCH4III ACNGT 4 cut(s) 598, 751, 1202, 1381
HpyCH4IV ACGT 4 cut(s) 611, 908, 1226, 1507
HpyCH4V TGCA 5 cut(s) 454, 616, 677, 845, 1402
HpyF10VI GCNNNNNNNGC 9 cut(s) 51, 296, 451, 473, 485, 553, 892, 931, 1097
HpyF3I CTNAG 6 cut(s) 501, 713, 896, 985, 1020, 1445
HpySE526I ACGT 4 cut(s) 611, 908, 1226, 1507
HspAI GCGC 1 cut(s) 165
KpnI GGTACC 1 cut(s) 382
Ksp22I TGATCA 2 cut(s) 243, 274
KspAI GTTAAC 1 cut(s) 1279
Kzo9I GATC 4 cut(s) 196, 243, 274, 1112
LmnI GCTCC 5 cut(s) 632, 709, 922, 1146, 1361
Lsp1109I GCAGC 5 cut(s) 122, 175, 463, 799, 1414
LweI GCATC 2 cut(s) 63, 454
MaeI CTAG 2 cut(s) 62, 776
MaeII ACGT 4 cut(s) 611, 908, 1226, 1507
MaeIII GTNAC 4 cut(s) 261, 407, 869, 1196
MalI GATC 4 cut(s) 198, 245, 276, 1114
MboI GATC 4 cut(s) 196, 243, 274, 1112
MflI RGATCY 1 cut(s) 1112
MhlI GDGCHC 2 cut(s) 936, 1143
MluCI AATT 7 cut(s) 394, 434, 667, 725, 916, 996, 1458
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 2 cut(s) 1099, 1168
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 6 cut(s) 102, 543, 812, 950, 1250, 1278
MslI CAYNNNNRTG 1 cut(s) 1044
MspA1I CMGCKG 2 cut(s) 113, 1405
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 1 cut(s) 1105
MwoI GCNNNNNNNGC 9 cut(s) 51, 296, 451, 473, 485, 553, 892, 931, 1097
NcoI CCATGG 3 cut(s) 37, 160, 623
NdeII GATC 4 cut(s) 196, 243, 274, 1112
NlaIV GGNNCC 2 cut(s) 380, 1142
NspV TTCGAA 1 cut(s) 562
PaqCI CACCTGC 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 6 cut(s) 689, 695, 794, 800, 1213, 1370
PflMI CCANNNNNTGG 1 cut(s) 629
PkrI GCNGC 6 cut(s) 112, 190, 478, 555, 789, 1404
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PpuMI RGGWCCY 1 cut(s) 889
PsiI TTATAA 1 cut(s) 1452
Psp1406I AACGTT 1 cut(s) 1226
Psp5II RGGWCCY 1 cut(s) 889
PspFI CCCAGC 2 cut(s) 635, 1096
PspN4I GGNNCC 2 cut(s) 380, 1142
PspPI GGNCC 1 cut(s) 889
PspPPI RGGWCCY 1 cut(s) 889
PstI CTGCAG 1 cut(s) 456
PstNI CAGNNNCTG 2 cut(s) 892, 1373
PsuI RGATCY 1 cut(s) 1112
RsaI GTAC 4 cut(s) 380, 911, 1333, 1503
RsaNI GTAC 4 cut(s) 379, 910, 1332, 1502
RseI CAYNNNNRTG 1 cut(s) 1044
SaqAI TTAA 6 cut(s) 102, 543, 812, 950, 1250, 1278
SatI GCNGC 6 cut(s) 111, 189, 477, 554, 788, 1403
Sau3AI GATC 4 cut(s) 196, 243, 274, 1112
Sau96I GGNCC 1 cut(s) 889
SchI GAGTC 1 cut(s) 125
SduI GDGCHC 2 cut(s) 936, 1143
SfaNI GCATC 2 cut(s) 63, 454
SfcI CTRYAG 3 cut(s) 452, 681, 747
SfuI TTCGAA 1 cut(s) 562
SinI GGWCC 1 cut(s) 889
SmiMI CAYNNNNRTG 1 cut(s) 1044
SmlI CTYRAG 3 cut(s) 542, 548, 929
SmoI CTYRAG 3 cut(s) 542, 548, 929
Sse9I AATT 7 cut(s) 394, 434, 667, 725, 916, 996, 1458
SsiI CCGC 4 cut(s) 113, 171, 554, 1405
SspI AATATT 1 cut(s) 1303
SspMI CTAG 2 cut(s) 62, 776
StyI CCWWGG 4 cut(s) 37, 160, 495, 623
TaaI ACNGT 4 cut(s) 598, 751, 1202, 1381
TaiI ACGT 4 cut(s) 614, 911, 1229, 1510
TaqI TCGA 4 cut(s) 90, 134, 403, 562
TasI AATT 7 cut(s) 394, 434, 667, 725, 916, 996, 1458
TatI WGTACW 2 cut(s) 1331, 1501
TauI GCSGC 1 cut(s) 556
TfiI GAWTC 6 cut(s) 689, 695, 794, 800, 1213, 1370
Tru1I TTAA 6 cut(s) 102, 543, 812, 950, 1250, 1278
Tru9I TTAA 6 cut(s) 102, 543, 812, 950, 1250, 1278
TscAI CASTG 2 cut(s) 756, 1442
TseI GCWGC 5 cut(s) 110, 188, 476, 787, 1402
TspDTI ATGAA 8 cut(s) 41, 360, 363, 738, 969, 1002, 1296, 1503
TspGWI ACGGA 1 cut(s) 622
TspRI CASTG 2 cut(s) 756, 1442
Van91I CCANNNNNTGG 1 cut(s) 629
Vha464I CTTAAG 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 889
XapI RAATTY 4 cut(s) 434, 916, 996, 1458
XcmI CCANNNNNNNNNTGG 1 cut(s) 529
XmiI GTMKAC 1 cut(s) 772
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 2 cut(s) 62, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.