Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005363.1

Orthogroup ID

OG0009980

Physical Location & Seq

Genomic Coordinates Reverse (-)

177164 .. 179221

Gene Structure 2058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005363.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atgattccatccaaagtccagatcagtggcttgagtttcaagaatattaggggctcatcttcatctccggttgatgtcaagctcgactgtagtcacagtgcactgtgccggaatgtggagctgtccgatattgatctcatgtacagtggagacaaaaaagacaaaattacatccgagtgtaataatgtcaagccgagaattactggcgtgactgaggcttttggttgtaccaatctaggtgacataccgccggtggtagacacacctcccctttcgccggtggtggacacacctcctcttcctcctccccctacgagtaaacgacttaacatggagcaagaagaaggcaacctcgaaaggcttctgaaatgggcggcggagtgtgggatatcagactcaaaatgtcgcgggctttcgtgtttgggccactctctcgtcgtctcctacttccatggcgcaggcgggagaggtttgggcgctgctcgtgatcttgaaaaaggagagttagttctcaaagttccaaaatgggctctgattacaagggaaagtctgttgttgaaagatgatcaactctctgttgctgtcaatgcccattgctctctctcccctacccagacattgacggtttgcttactgtatgaaatgggtaaagggaagacttcatggtggcacccttacctgatcaatttgccgcgcagttatgacattatagcaacatttggtgaatttgagaagcaagctctgcaggtggatgatgccatctgggctgctgataaggccatttccaaggctcagtttgagtggaaagaaactaatgcgctcatggaacaacttaagctcaagccgcaacttagaacatttaatggaagtttgtgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

292

Amino Acids

32.03

Weight (kDa)

6.53

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17240 AT5G17240
fragaria_vesca	FvH4_1g27420
malus_domestica	MD07G1015500.v1.1 MD17G1287300.v1.1
prunus_persica	Prupe.3G014000_v2.0.a1
pyrus_communis	pycom07g01180 pycom07g01780 pycom07g01830 pycom07g01860
rosa_chinensis	RchiOBHm_Chr3g0488621
rosa_laevigata	RLG00000022939
rosa_multiflora	Rmu_sc0005363.1_g000050
rosa_roxburghii	Rroxscaffold_6G00394090
rosa_rugosa	Rorug03G0239700 Rorug03G0239800
rosa_samantha	Rh3AG288600 Rh3BG325300 Rh3CG322900 Rh3DG321600
rosa_wichuraiana	Rw3G025540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	736
Acc36I	ACCTGC	1 cut(s)	736
AccB1I	GGYRCC	1 cut(s)	669
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	2 cut(s)	408, 694
AciI	CCGC	7 cut(s)	248, 374, 377, 408, 462, 692, 845
AcsI	RAATTY	1 cut(s)	725
AfaI	GTAC	2 cut(s)	143, 229
AfiI	CCNNNNNNNGG	2 cut(s)	115, 277
AflII	CTTAAG	1 cut(s)	833
AgsI	TTSAA	3 cut(s)	40, 494, 559
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
AluBI	AGCT	4 cut(s)	82, 121, 740, 838
AluI	AGCT	4 cut(s)	82, 121, 740, 838
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	2 cut(s)	144, 445
Alw44I	GTGCAC	1 cut(s)	99
AoxI	GGCC	2 cut(s)	424, 777
ApaLI	GTGCAC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	479, 767
ApoI	RAATTY	1 cut(s)	725
Asp700I	GAANNNNTTC	1 cut(s)	360
AspLEI	GCGC	4 cut(s)	458, 479, 696, 820
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	2 cut(s)	251, 734
BaeGI	GKGCMC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	669
BanII	GRGCYC	2 cut(s)	56, 532
BauI	CACGAG	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	662
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	466, 754
BccI	CCATC	2 cut(s)	16, 767
BclI	TGATCA	2 cut(s)	565, 681
BcoDI	GTCTC	2 cut(s)	144, 445
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	2 cut(s)	88, 743
BfoI	RGCGCY	1 cut(s)	480
BfrI	CTTAAG	1 cut(s)	833
BfuAI	ACCTGC	1 cut(s)	736
BglI	GCCNNNNNGGC	1 cut(s)	764
BisI	GCNGC	5 cut(s)	375, 480, 692, 768, 845
BlsI	GCNGC	5 cut(s)	376, 481, 693, 769, 846
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	671
BmsI	GCATC	1 cut(s)	745
BoxI	GACNNNNGTC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	662
BpuEI	CTTGAG	2 cut(s)	52, 824
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	451, 786
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 277
Bse118I	RCCGGY	2 cut(s)	250, 277
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	592
Bse8I	GATNNNNATC	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	451, 786
BseGI	GGATG	3 cut(s)	8, 170, 757
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	115, 277
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	2 cut(s)	204, 806
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	285, 294
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	466, 754
Bsh1236I	CGCG	2 cut(s)	408, 694
BshFI	GGCC	2 cut(s)	426, 779
BshNI	GGYRCC	1 cut(s)	669
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	4 cut(s)	68, 109, 251, 278
BslI	CCNNNNNNNGG	2 cut(s)	115, 277
BsmAI	GTCTC	2 cut(s)	144, 445
BsmBI	CGTCTC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	426, 779
Bsp1286I	GDGCHC	3 cut(s)	56, 103, 532
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	5 cut(s)	21, 133, 487, 565, 681
Bsp19I	CCATGG	1 cut(s)	451
BspACI	CCGC	7 cut(s)	248, 374, 377, 408, 462, 692, 845
BspANI	GGCC	2 cut(s)	426, 779
BspCNI	CTCAG	2 cut(s)	205, 805
BspFNI	CGCG	2 cut(s)	408, 694
BspLI	GGNNCC	1 cut(s)	671
BspMAI	CTGCAG	1 cut(s)	747
BspMI	ACCTGC	1 cut(s)	736
BspT107I	GGYRCC	1 cut(s)	669
BspTI	CTTAAG	1 cut(s)	833
BsrDI	GCAATG	1 cut(s)	592
BsrFI	RCCGGY	2 cut(s)	250, 277
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	2 cut(s)	250, 277
BssECI	CCNNGG	2 cut(s)	451, 786
BssMI	GATC	5 cut(s)	21, 133, 487, 565, 681
BssSI	CACGAG	1 cut(s)	483
BssT1I	CCWWGG	2 cut(s)	451, 786
Bst2BI	CACGAG	1 cut(s)	483
Bst4CI	ACNGT	6 cut(s)	89, 98, 105, 146, 625, 636
Bst6I	CTCTTC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	833
BstAPI	GCANNNNNTGC	1 cut(s)	742
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	3 cut(s)	410, 460, 738
BstDEI	CTNAG	3 cut(s)	213, 792, 851
BstDSI	CCRYGG	1 cut(s)	451
BstF5I	GGATG	3 cut(s)	8, 170, 757
BstFNI	CGCG	2 cut(s)	408, 694
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	4 cut(s)	458, 479, 696, 820
BstKTI	GATC	5 cut(s)	24, 136, 490, 568, 684
BstMAI	GTCTC	2 cut(s)	144, 445
BstMBI	GATC	5 cut(s)	21, 133, 487, 565, 681
BstMWI	GCNNNNNNNGC	5 cut(s)	587, 742, 764, 776, 844
BstPAI	GACNNNNGTC	1 cut(s)	90
BstSFI	CTRYAG	2 cut(s)	88, 743
BstSLI	GKGCMC	1 cut(s)	103
BstUI	CGCG	2 cut(s)	408, 694
BstV1I	GCAGC	2 cut(s)	466, 754
BstV2I	GAAGAC	1 cut(s)	662
BstXI	CCANNNNNNTGG	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	426, 779
BtgI	CCRYGG	1 cut(s)	451
BtsCI	GGATG	3 cut(s)	8, 170, 757
BtsIMutI	CAGTG	4 cut(s)	31, 101, 103, 151
BveI	ACCTGC	1 cut(s)	736
Cac8I	GCNNGC	3 cut(s)	410, 460, 738
CfoI	GCGC	4 cut(s)	458, 479, 696, 820
Cfr10I	RCCGGY	2 cut(s)	250, 277
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	142, 228
CviAII	CATG	5 cut(s)	139, 331, 452, 663, 823
CviQI	GTAC	2 cut(s)	142, 228
DdeI	CTNAG	3 cut(s)	213, 792, 851
DpnI	GATC	5 cut(s)	23, 135, 489, 567, 683
DpnII	GATC	5 cut(s)	21, 133, 487, 565, 681
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	451, 786
Eco24I	GRGCYC	2 cut(s)	56, 532
Eco32I	GATATC	1 cut(s)	390
EcoRV	GATATC	1 cut(s)	390
EcoT14I	CCWWGG	2 cut(s)	451, 786
EcoT38I	GRGCYC	2 cut(s)	56, 532
ErhI	CCWWGG	2 cut(s)	451, 786
Esp3I	CGTCTC	1 cut(s)	445
FaeI	CATG	5 cut(s)	142, 334, 455, 666, 826
FaiI	YATR	9 cut(s)	140, 245, 332, 453, 639, 664, 702, 710, 824
FatI	CATG	5 cut(s)	138, 330, 451, 662, 822
FauI	CCCGC	2 cut(s)	401, 455
FbaI	TGATCA	2 cut(s)	565, 681
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	5 cut(s)	375, 480, 692, 768, 845
FokI	GGATG	2 cut(s)	157, 764
FriOI	GRGCYC	2 cut(s)	56, 532
Fsp4HI	GCNGC	5 cut(s)	375, 480, 692, 768, 845
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	4 cut(s)	457, 478, 695, 819
GluI	GCNGC	5 cut(s)	375, 480, 692, 768, 845
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	2 cut(s)	426, 779
HapII	CCGG	4 cut(s)	68, 109, 251, 278
HhaI	GCGC	4 cut(s)	458, 479, 696, 820
Hin1II	CATG	5 cut(s)	142, 334, 455, 666, 826
Hin6I	GCGC	4 cut(s)	456, 477, 694, 818
HinP1I	GCGC	4 cut(s)	456, 477, 694, 818
HinfI	GANTC	2 cut(s)	4, 395
HpaII	CCGG	4 cut(s)	68, 109, 251, 278
HphI	GGTGA	2 cut(s)	251, 734
Hpy166II	GTNNAC	4 cut(s)	101, 259, 286, 320
Hpy188I	TCNGA	5 cut(s)	127, 175, 366, 394, 534
Hpy188III	TCNNGA	4 cut(s)	19, 40, 485, 491
Hpy8I	GTNNAC	4 cut(s)	101, 259, 286, 320
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	1 cut(s)	338
HpyCH4III	ACNGT	6 cut(s)	89, 98, 105, 146, 625, 636
HpyCH4V	TGCA	2 cut(s)	101, 745
HpyF10VI	GCNNNNNNNGC	5 cut(s)	587, 742, 764, 776, 844
HpyF3I	CTNAG	3 cut(s)	213, 792, 851
Hsp92II	CATG	5 cut(s)	142, 334, 455, 666, 826
HspAI	GCGC	4 cut(s)	456, 477, 694, 818
Ksp22I	TGATCA	2 cut(s)	565, 681
Kzo9I	GATC	5 cut(s)	21, 133, 487, 565, 681
LmnI	GCTCC	2 cut(s)	118, 334
Lsp1109I	GCAGC	2 cut(s)	466, 754
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	3 cut(s)	92, 208, 239
MalI	GATC	5 cut(s)	23, 135, 489, 567, 683
MboI	GATC	5 cut(s)	21, 133, 487, 565, 681
MboII	GAAGA	4 cut(s)	51, 290, 353, 667
MhlI	GDGCHC	3 cut(s)	56, 103, 532
MluCI	AATT	4 cut(s)	165, 198, 685, 725
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	8 cut(s)	208, 276, 303, 306, 312, 315, 362, 461
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	4 cut(s)	327, 834, 861, 877
MslI	CAYNNNNRTG	1 cut(s)	175
MspCI	CTTAAG	1 cut(s)	833
MspI	CCGG	4 cut(s)	68, 109, 251, 278
MvnI	CGCG	2 cut(s)	408, 694
MwoI	GCNNNNNNNGC	5 cut(s)	587, 742, 764, 776, 844
NcoI	CCATGG	1 cut(s)	451
NdeII	GATC	5 cut(s)	21, 133, 487, 565, 681
NlaIII	CATG	5 cut(s)	142, 334, 455, 666, 826
NlaIV	GGNNCC	1 cut(s)	671
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	3 cut(s)	92, 208, 239
PaqCI	CACCTGC	1 cut(s)	736
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	5 cut(s)	376, 481, 693, 769, 846
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PshAI	GACNNNNGTC	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	671
PspPI	GGNCC	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	747
RsaI	GTAC	2 cut(s)	143, 229
RsaNI	GTAC	2 cut(s)	142, 228
RseI	CAYNNNNRTG	1 cut(s)	175
SaqAI	TTAA	4 cut(s)	327, 834, 861, 877
SatI	GCNGC	5 cut(s)	375, 480, 692, 768, 845
Sau3AI	GATC	5 cut(s)	21, 133, 487, 565, 681
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	389
SduI	GDGCHC	3 cut(s)	56, 103, 532
SfaNI	GCATC	1 cut(s)	745
SfcI	CTRYAG	2 cut(s)	88, 743
SgrAI	CRCCGGYG	2 cut(s)	250, 277
SmiMI	CAYNNNNRTG	1 cut(s)	175
SmlI	CTYRAG	3 cut(s)	31, 833, 839
SmoI	CTYRAG	3 cut(s)	31, 833, 839
Sse9I	AATT	4 cut(s)	165, 198, 685, 725
SsiI	CCGC	7 cut(s)	248, 374, 377, 408, 462, 692, 845
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	1 cut(s)	236
StyI	CCWWGG	2 cut(s)	451, 786
TaaI	ACNGT	6 cut(s)	89, 98, 105, 146, 625, 636
TaqI	TCGA	2 cut(s)	84, 354
TasI	AATT	4 cut(s)	165, 198, 685, 725
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	3 cut(s)	377, 694, 847
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	4 cut(s)	327, 834, 861, 877
Tru9I	TTAA	4 cut(s)	327, 834, 861, 877
TscAI	CASTG	4 cut(s)	31, 103, 108, 151
TseFI	GTSAC	3 cut(s)	92, 208, 239
TseI	GCWGC	2 cut(s)	479, 767
Tsp45I	GTSAC	3 cut(s)	92, 208, 239
TspDTI	ATGAA	3 cut(s)	51, 651, 654
TspRI	CASTG	4 cut(s)	31, 103, 108, 151
Vha464I	CTTAAG	1 cut(s)	833
VneI	GTGCAC	1 cut(s)	99
XapI	RAATTY	1 cut(s)	725
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.