Rorug03G0239700

Protein SET DOMAIN GROUP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009980
Physical Location & Seq
Reverse (-)
22417699 .. 22429088
11390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0239700.1

Sequence Viewer

Length: 4152 bp
ATGGTCTTAGGTACAAAGGAGGAACATAAAAAGAAGATATTGGAGCTGTTGAAGGATCCCAATGTGTCAACAGTAGTTCTTGATGGGAAGCGTGGAGTAGGGAAAACGAGGATAGCAAAAGAGATAATCATGGATGAAGATTTCCATGACACTCTCTGGCTGTATGTGAATAACAATTATGACACAGAATCTCTTCTAAAAAACATAGCTCGCCAGCTATCTCTTTTCTCTATTTATGAGGAATGGGAAGATGATGATGCTGTCGAGGAGGAGCAGAGCTTGGAAAAGTTGAAGCCGAGAATATCTGTGAAGCTTGAAGAATTCAGATCTGCAGCACATAAAAAAAAAAAACTATTTCTTCTAGTTCTGGATGATGTTCCTCATCAGAAGGATGTAGAGGAGATTGTGGAAGAAGTTAACAACCTGCTGACAAATGACCGCCCATCTTTCAAGGTTTTAATCACCAGAGGCACCACACTCGGGATGAACCAGGAAATTAAGAGCTGCAATACAAAAGTACACCAGATAAATCCATTGTCCACGGATGATTCCTTGGCTTTATTGCGTGAAAGAACCAAGAAAGAAGTTTTTGATCGTCCAAGCTTTGAAAAACTATCCACAGCTATTGTGGAGATGAGTAAGGGTATTCCTACCGTACTTATCACCATAGCAAAAGCAATAAATTACCTGGCAGATGAATGTTCTGGCGTTTGGTCGTTGGAAAATGTTTTGGAAGAAGCAGCTTATGATGGGGAAACTGCTATAAATCTGCTACTTCGCTCTTGGTGTAATGCATTGCCAACCGGTGCTCCGACCGACTGCTTTTGGCATACCATGCAGCTTCTCAACAAACATGGTGGTGTTCATTACAATGAGTTGATCACACAATGGATAATGGAAGGATATTTTGGATGCAACAACCAGATTGGGAAGGTCTATGAGCAAGGACATAAGGTTCTGATGGACCTTATAGATTGGGGCATGCTGACAAAACAAGAGGATAATATGGTTGTCATGGGAGGAATAATTTTGAGTATAACTGGTCATTGCCGACGTGAATTGAATGAGACTGCAAGGCTTGGATTGGCTAATGTTTTTGAAGATGAAAATTGGAAAGGTCTTGGAATGCTTGCACATACGGATCGTATGATAAAATCACCATCCTGTCATAAGACCTGGGAGAAAGTTTCTACACTTCTGATGGATGGGCATTGCATTGATAGGGAAGTACCTGTAACATGCTTTCAACGCATGGAGACTCTCCAAGTTCTCATGTTAATCAAGCCTAGGTTCTCTCTGCCAGTACCCTTGGTTGGCATAAATAACCTTTCCATTCTTGTGCTTAGATTCTGTGATCGCTTGGAGAAGATTGATCCTATCCGAGAATTTCAAAGCTTAAGTGTTCTTGAGATATCTGGTGCTACTTTGTTGGAGATGATCCCCAATGACTTTTTTACAAAGATGCATAAGCTTCGAAGCGTTAACCTTTCTGAAGCCAAGGTCAAATCACTACCTAGTTCTCTTTTTGAAAGAAGTGAACTACGGTGGCTCATCCTTAGAGGGTGTTCTGAATTGAAAACACTTCCAAGCTTAAAATCCTTGGGAAAACTCAAGGTGCTTGATCTTTCTGGTGCTACCTCTTTCAGCAGATTCCGAGACAAAACCTTTGCAGCTCTTCAGAAACTTCATACACTTAATCTTTCTAATTCTCAAATTACTCGCTTACCTTTTCTTCATGGTAATGATGAGCTTAATCAGCTCCTATTAGGTGGCTGTGCAAGTTTAAACAGACTTCCAACCTTGAACACAATACCTCGGCTTCAAATTCTAGATCTTTCTGGTGCTACAGGCTTAAAAGAAATACAGTTCGAACCTTTAGATAGCCTTAAGGCCCTTGATTTATCTGGAACTCATATTAAAAGGCAACCTTCCAGTTTCAGCCACCTTTCTGATCTCTCCTTACGAGAGTGTCGTGAGCTTGTAAGACTTCCACTCACAAAAGAAATCAAATATCTTGAATCACTTGACCTTTCTGGTTCTAGCACTATGGTTGAAATTGAAGACAAATTCTTCCAGCATATGAGGTTTCTTCGAGTTCTCAACTTTTCAACAGTTAAGATAAAAGAACTACCTTCCCTGTCCAACCTAGCTAACCTCTGTCGACTTTTGCTAATGGATTGTTCATGTTTAGAAAAGCTTCCAGAGATGGAAGGACTTAAAAGGCTCCAAGAGCTTAATCTTTCTGGTTGTGTGGCATTGGTTGATTTGCCAAACCTGAATTCCCTTGAAAAACTGGAGATTCTTGATATTTCAGGTTGCAGGGTTTTGAAACAAATACAAGAGGAATCCTTTCAAAAGATGTCCCATATTCGGATACTCAACCTCTCAGACACTATGATTGAGTTCCTACCATCCATTTACAAACCCAGCAACCTCTGTCACCTCATCCTCAGAAATTGCAAAAACTTAAAAAAGCTTCCACCTCTTGAGCATTTGTCAAAACTTGAGGAACTGAATCTGTGTGGTGCCAGTTCTTTAGTTGACTTTACATCTGAATTCCTGGAGCATATGGTCGACCTTCAAATTGTTGACTTATCTGAAATCCCACTGACAAAGGTACCATCCATGTCCAAATTCATCAAACTCAGACAGTTCTCAGTAAAGGGTTGTTCATCCTTAAATGAAGTGATACATCTTGAAGTACTAACACTTCTTGAGATTCTTGATCTTTCTGGAACAGCAGTTCCGAGTCTGCCTCCCCTAAACACTTTTAGCAACCTCCGCCAGCTCTTGCTAAAAGATTGTTTACAGATAGAAGAGTTGCAGTTTCTAGAGTCGCTCAGTCGGCTGGAGGTTCTTGATCTGTCTGGAACCAGAATGAAGCAATTTCCTTATGAGATATCAGAGCTTACTCATTTAAAGCAGCTTTATCTGCCTGACTTGAGGGGTATGCGTGATCTTGACTTGGGAAAGATAAAGCGTTTGCCACAAAAGGTCAACTGGGATGAATGTCACATCTTTGAGTGTGCTGATATTTACATGGGCAGTGACAAGACTTCCCTATCTGTAAGTGGCTTTGAAATTTTTCACATTTTGGACAAACATCCAAAGTTCTGGGAAGAAAAGTTCAAAAAATTTCATTTCCATGTAAAGAAGAAGGAAGGCGAAGATGGAGGTATCAATCACTGCAAAGATGAATTTATCTTCAGAGATGTGTACTTCCACACTAGACATTTTTATCCTAAAGAGCACGACAGGTCTTTGGAAATCTATGGATCGTATAGTCTCCCTAAGGGTTTTGAAAGTGTCCTCAAGTGTGCCGAATGCATATCTTTGGTTGACAATGATATACATAGCCTATCTTATTTAGGTTCTGATAATGTGAGGGCAATGAAAGGCTGTTGGTTAGAGAGATGTAGTAAAGTACGAAACATTCTTTCTAATGATGAGGCAGGTGTCACACTGGGCAGAAGTTTAGAGACTCTATGGATTTCAAACCTCCCAATTTTGAGCAGTCTATACAATGGGAGTGTGCAATCAGTGGTGTTTCAGAACCTTAAACAATTGTATCTGGATTGTTGTCCAGGCATTGTAAATGTCTTTCCATCCTCCCAGCTTCCAGAAAACCTGGAAACTCTACATGTTCAGTTTTGTGATAAGTTGCAAACTTTGTTCGAATGTGATTCACAATCTAGTTGTGCAATGCAAAGGTTGAGGAAATTGTATCTACTGGAACTACCAGAGTTGAGGAGCATTGGGATAAAATTGCCAGAAGCCCTGGAAATTCTACATGTTCAGTCTTGTGATAAGTTGCAAACTTTGTTTGAGTGTGCTTCACAATCTAGTTGTGCAATGCAAAGATTGAGGAAATTGTATCTACTGGAACTACTGGAGTTGAGGAGCATTGGGATAAAATTGCCAGAAGACCTAGAAATTCTACATGTTCAGTCTTGTGATAAGTTGCAAACTTTGTTTGAGTGTGATTCACAATCTAGTTGTGCAATGCAAAGATTGAGGAAATTGTATCTACAGGAACTACCAGAGTTGAGGAGCATTGGGATAAAATTGCCAGCTGAACTGACTTCTGTGGTCATCAAATGCCCCAAGTTGCTGAAGCTCCAGTTGGATGTGACCGACCAGGTCTCCAAGTAA

Protein Analysis

1383

Amino Acids

157.81

Weight (kDa)

6.11

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 7 - 191 1.3e-12 NB-ARC domain
LRR_14 PF23598 454 - 571 9.8e-07 Leucine-rich repeat region
LRR_EndoS PF23952 695 - 779 7.4e-06 Endo-beta-N-acetylglucosaminidase EndoS LRR domain
LRR_14 PF23598 755 - 897 2.3e-06 Leucine-rich repeat region
LRR_8 PF13855 764 - 820 8.4e-06 Leucine rich repeat
LRR_14 PF23598 912 - 997 5.9e-07 Leucine-rich repeat region
LRR_RPS2 PF23247 1160 - 1280 2.1e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17240 AT5G17240
fragaria_vesca FvH4_1g27420
malus_domestica MD07G1015500.v1.1 MD17G1287300.v1.1
prunus_persica Prupe.3G014000_v2.0.a1
pyrus_communis pycom07g01180 pycom07g01780 pycom07g01830 pycom07g01860
rosa_chinensis RchiOBHm_Chr3g0488621
rosa_laevigata RLG00000022939
rosa_multiflora Rmu_sc0005363.1_g000050
rosa_roxburghii Rroxscaffold_6G00394090
rosa_rugosa Rorug03G0239700 Rorug03G0239800
rosa_samantha Rh3AG288600 Rh3BG325300 Rh3CG322900 Rh3DG321600
rosa_wichuraiana Rw3G025540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3443
Acc36I ACCTGC 2 cut(s) 432, 3443
Acc65I GGTACC 1 cut(s) 2617
AccB1I GGYRCC 3 cut(s) 470, 2525, 2617
AccI GTMKAC 2 cut(s) 2161, 2574
AciI CCGC 2 cut(s) 439, 2782
AclWI GGATC 6 cut(s) 50, 63, 1149, 1367, 1432, 3283
AcuI CTGAAG 4 cut(s) 1512, 1661, 3190, 4133
AfaI GTAC 9 cut(s) 13, 519, 657, 1230, 1305, 2619, 2703, 3218, 3426
AfiI CCNNNNNNNGG 3 cut(s) 480, 1313, 2370
AflII CTTAAG 2 cut(s) 1396, 1886
AflIII ACRYGT 3 cut(s) 3640, 3790, 3940
AgeI ACCGGT 1 cut(s) 803
AjiI CACGTC 1 cut(s) 1055
AjnI CCWGG 8 cut(s) 489, 687, 1175, 2559, 3583, 3627, 3777, 4137
AjuI GAANNNNNNNTTGG 6 cut(s) 891, 923, 2263, 2295, 4106, 4138
AloI GAACNNNNNNTCC 8 cut(s) 939, 971, 2727, 2728, 2759, 2760, 3110, 3142
Alw21I GWGCWC 2 cut(s) 811, 3252
Alw26I GTCTC 6 cut(s) 1061, 1250, 1650, 3290, 3473, 4147
AlwI GGATC 6 cut(s) 50, 63, 1149, 1367, 1432, 3283
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 1 cut(s) 1890
ApeKI GCWGC 6 cut(s) 332, 504, 740, 838, 1670, 2923
ArsI GACNNNNNNTTYG 2 cut(s) 1649, 1681
AsiGI ACCGGT 1 cut(s) 803
Asp700I GAANNNNTTC 4 cut(s) 192, 2196, 2349, 3084
Asp718I GGTACC 1 cut(s) 2617
AspA2I CCTAGG 1 cut(s) 1286
AspS9I GGNCC 2 cut(s) 964, 1891
AsuHPI GGTGA 4 cut(s) 454, 655, 1149, 2432
AsuII TTCGAA 3 cut(s) 1474, 1869, 3675
AvaI CYCGRG 1 cut(s) 479
AvaII GGWCC 1 cut(s) 964
AvrII CCTAGG 1 cut(s) 1286
AxyI CCTNAGG 1 cut(s) 3291
BaeI ACNNNNGTAYC 4 cut(s) 2601, 2634, 3551, 3584
BamHI GGATCC 1 cut(s) 55
BanI GGYRCC 3 cut(s) 470, 2525, 2617
BarI GAAGNNNNNNTAC 2 cut(s) 2694, 2726
BbsI GAAGAC 2 cut(s) 2067, 3930
Bbv12I GWGCWC 2 cut(s) 811, 3252
BbvI GCAGC 6 cut(s) 344, 491, 752, 850, 1682, 2935
BcgI CGANNNNNNTGC 4 cut(s) 460, 494, 1454, 1488
BciT130I CCWGG 8 cut(s) 491, 689, 1177, 2561, 3585, 3629, 3779, 4139
BciVI GTATCC 1 cut(s) 2367
BclI TGATCA 1 cut(s) 879
BcoDI GTCTC 6 cut(s) 1061, 1250, 1650, 3290, 3473, 4147
BfmI CTRYAG 3 cut(s) 330, 1845, 4028
BfrI CTTAAG 2 cut(s) 1396, 1886
BfuAI ACCTGC 2 cut(s) 432, 3443
BfuI GTATCC 1 cut(s) 2367
BglII AGATCT 2 cut(s) 326, 1831
BisI GCNGC 6 cut(s) 333, 505, 741, 839, 1671, 2924
BlnI CCTAGG 1 cut(s) 1286
BlsI GCNGC 6 cut(s) 334, 506, 742, 840, 1672, 2925
BmcAI AGTACT 1 cut(s) 2703
Bme1390I CCNGG 8 cut(s) 491, 689, 1177, 2561, 3585, 3629, 3779, 4139
Bme18I GGWCC 1 cut(s) 964
BmeT110I CYCGRG 1 cut(s) 479
BmgBI CACGTC 1 cut(s) 1055
BmgT120I GGNCC 2 cut(s) 964, 1891
BmiI GGNNCC 6 cut(s) 57, 472, 2225, 2527, 2619, 2872
BmrFI CCNGG 8 cut(s) 491, 689, 1177, 2561, 3585, 3629, 3779, 4139
BmrI ACTGGG 2 cut(s) 3010, 3473
BmsI GCATC 3 cut(s) 247, 902, 1452
BmuI ACTGGG 2 cut(s) 3010, 3473
BpiI GAAGAC 2 cut(s) 2067, 3930
BplI GAGNNNNNCTC 2 cut(s) 2740, 2772
BpmI CTGGAG 5 cut(s) 2315, 2582, 2870, 3911, 4103
Bpu14I TTCGAA 3 cut(s) 1474, 1869, 3675
BpuEI CTTGAG 7 cut(s) 1427, 1595, 2507, 2525, 2735, 2962, 3296
BsaI GGTCTC 1 cut(s) 4147
BsaJI CCNNGG 9 cut(s) 540, 552, 1176, 1286, 1308, 1497, 1599, 1814, 3777
BsaWI WCCGGW 1 cut(s) 803
BsaXI ACNNNNNCTCC 3 cut(s) 793, 823, 4127
Bsc4I CCNNNNNNNGG 3 cut(s) 480, 1313, 2370
Bse118I RCCGGY 1 cut(s) 803
Bse21I CCTNAGG 1 cut(s) 3291
Bse3DI GCAATG 7 cut(s) 794, 1045, 1210, 3396, 3708, 3858, 4008
BseBI CCWGG 8 cut(s) 491, 689, 1177, 2561, 3585, 3629, 3779, 4139
BseDI CCNNGG 9 cut(s) 540, 552, 1176, 1286, 1308, 1497, 1599, 1814, 3777
BseLI CCNNNNNNNGG 3 cut(s) 480, 1313, 2370
BseMI GCAATG 7 cut(s) 794, 1045, 1210, 3396, 3708, 3858, 4008
BseMII CTCAG 5 cut(s) 2400, 2464, 2659, 2670, 2854
BseRI GAGGAG 6 cut(s) 281, 284, 413, 3763, 3913, 4063
BseXI GCAGC 6 cut(s) 344, 491, 752, 850, 1682, 2935
BseYI CCCAGC 2 cut(s) 2426, 3612
Bsh1285I CGRYCG 1 cut(s) 816
BshFI GGCC 1 cut(s) 1892
BshNI GGYRCC 3 cut(s) 470, 2525, 2617
BshTI ACCGGT 1 cut(s) 803
BsiEI CGRYCG 1 cut(s) 816
BsiHKAI GWGCWC 2 cut(s) 811, 3252
BsiHKCI CYCGRG 1 cut(s) 479
BsiSI CCGG 1 cut(s) 804
BslFI GGGAC 1 cut(s) 2347
BslI CCNNNNNNNGG 3 cut(s) 480, 1313, 2370
BsmAI GTCTC 6 cut(s) 1061, 1250, 1650, 3290, 3473, 4147
BsmFI GGGAC 1 cut(s) 2347
BsmI GAATGC 2 cut(s) 1131, 3329
BsnI GGCC 1 cut(s) 1892
Bso31I GGTCTC 1 cut(s) 4147
BsoBI CYCGRG 1 cut(s) 479
Bsp119I TTCGAA 3 cut(s) 1474, 1869, 3675
Bsp1286I GDGCHC 2 cut(s) 811, 3252
BspACI CCGC 2 cut(s) 439, 2782
BspANI GGCC 1 cut(s) 1892
BspCNI CTCAG 5 cut(s) 2399, 2463, 2658, 2669, 2853
BspLI GGNNCC 6 cut(s) 57, 472, 2225, 2527, 2619, 2872
BspMAI CTGCAG 1 cut(s) 334
BspMI ACCTGC 2 cut(s) 432, 3443
BspPI GGATC 6 cut(s) 50, 63, 1149, 1367, 1432, 3283
BspQI GCTCTTC 1 cut(s) 1680
BspT104I TTCGAA 3 cut(s) 1474, 1869, 3675
BspT107I GGYRCC 3 cut(s) 470, 2525, 2617
BspTI CTTAAG 2 cut(s) 1396, 1886
BspTNI GGTCTC 1 cut(s) 4147
BsrDI GCAATG 7 cut(s) 794, 1045, 1210, 3396, 3708, 3858, 4008
BsrFI RCCGGY 1 cut(s) 803
BssAI RCCGGY 1 cut(s) 803
BssECI CCNNGG 9 cut(s) 540, 552, 1176, 1286, 1308, 1497, 1599, 1814, 3777
BssT1I CCWWGG 5 cut(s) 552, 1286, 1308, 1497, 1599
Bst2UI CCWGG 8 cut(s) 491, 689, 1177, 2561, 3585, 3629, 3779, 4139
Bst4CI ACNGT 6 cut(s) 73, 655, 1545, 1866, 2113, 2652
Bst6I CTCTTC 3 cut(s) 198, 1680, 2811
BstAFI CTTAAG 2 cut(s) 1396, 1886
BstAPI GCANNNNNTGC 1 cut(s) 835
BstBI TTCGAA 3 cut(s) 1474, 1869, 3675
BstC8I GCNNGC 6 cut(s) 211, 215, 983, 1131, 2786, 4071
BstDEI CTNAG 9 cut(s) 7, 1343, 1556, 2386, 2450, 2645, 2656, 2840, 3291
BstDSI CCRYGG 1 cut(s) 540
BstMAI GTCTC 6 cut(s) 1061, 1250, 1650, 3290, 3473, 4147
BstMCI CGRYCG 1 cut(s) 816
BstMWI GCNNNNNNNGC 7 cut(s) 835, 1248, 1756, 2230, 2781, 2845, 2932
BstNI CCWGG 8 cut(s) 491, 689, 1177, 2561, 3585, 3629, 3779, 4139
BstNSI RCATGY 5 cut(s) 985, 1242, 3644, 3794, 3944
BstSCI CCNGG 8 cut(s) 489, 687, 1175, 2559, 3583, 3627, 3777, 4137
BstSFI CTRYAG 3 cut(s) 330, 1845, 4028
BstV1I GCAGC 6 cut(s) 344, 491, 752, 850, 1682, 2935
BstV2I GAAGAC 2 cut(s) 2067, 3930
BstX2I RGATCY 3 cut(s) 55, 326, 1831
BstXI CCANNNNNNTGG 1 cut(s) 3114
BstYI RGATCY 3 cut(s) 55, 326, 1831
Bsu36I CCTNAGG 1 cut(s) 3291
BsuI GTATCC 1 cut(s) 2367
BsuRI GGCC 1 cut(s) 1892
BtgI CCRYGG 1 cut(s) 540
BtrI CACGTC 1 cut(s) 1055
BtsI GCAGTG 2 cut(s) 3052, 3184
BtsIMutI CAGTG 5 cut(s) 2606, 3052, 3184, 3461, 3546
BveI ACCTGC 2 cut(s) 432, 3443
Cac8I GCNNGC 6 cut(s) 211, 215, 983, 1131, 2786, 4071
Cfr10I RCCGGY 1 cut(s) 803
Cfr13I GGNCC 2 cut(s) 964, 1891
CsiI ACCWGGT 1 cut(s) 4137
Csp6I GTAC 9 cut(s) 12, 518, 656, 1229, 1304, 2618, 2702, 3217, 3425
CspAI ACCGGT 1 cut(s) 803
CspCI CAANNNNNGTGG 4 cut(s) 607, 642, 838, 873
CviQI GTAC 9 cut(s) 12, 518, 656, 1229, 1304, 2618, 2702, 3217, 3425
DdeI CTNAG 9 cut(s) 7, 1343, 1556, 2386, 2450, 2645, 2656, 2840, 3291
DraI TTTAAA 2 cut(s) 1785, 2919
Eam1104I CTCTTC 3 cut(s) 198, 1680, 2811
EarI CTCTTC 3 cut(s) 198, 1680, 2811
EciI GGCGGA 1 cut(s) 2771
Eco130I CCWWGG 5 cut(s) 552, 1286, 1308, 1497, 1599
Eco31I GGTCTC 1 cut(s) 4147
Eco32I GATATC 2 cut(s) 1413, 2901
Eco47I GGWCC 1 cut(s) 964
Eco57I CTGAAG 4 cut(s) 1512, 1661, 3190, 4133
Eco81I CCTNAGG 1 cut(s) 3291
Eco88I CYCGRG 1 cut(s) 479
EcoO109I RGGNCCY 1 cut(s) 1891
EcoRI GAATTC 3 cut(s) 320, 2278, 2555
EcoRII CCWGG 8 cut(s) 489, 687, 1175, 2559, 3583, 3627, 3777, 4137
EcoRV GATATC 2 cut(s) 1413, 2901
EcoT14I CCWWGG 5 cut(s) 552, 1286, 1308, 1497, 1599
EcoT22I ATGCAT 3 cut(s) 796, 1467, 3329
ErhI CCWWGG 5 cut(s) 552, 1286, 1308, 1497, 1599
FalI AAGNNNNNCTT 2 cut(s) 1912, 1944
FaqI GGGAC 1 cut(s) 2347
FauNDI CATATG 2 cut(s) 2079, 2568
FbaI TGATCA 1 cut(s) 879
FblI GTMKAC 2 cut(s) 2161, 2574
Fnu4HI GCNGC 6 cut(s) 333, 505, 741, 839, 1671, 2924
Fsp4HI GCNGC 6 cut(s) 333, 505, 741, 839, 1671, 2924
GluI GCNGC 6 cut(s) 333, 505, 741, 839, 1671, 2924
GsaI CCCAGC 2 cut(s) 2430, 3616
GsuI CTGGAG 5 cut(s) 2315, 2582, 2870, 3911, 4103
HaeIII GGCC 1 cut(s) 1892
HapII CCGG 1 cut(s) 804
HincII GTYRAC 9 cut(s) 69, 418, 1483, 2162, 2542, 2575, 2590, 2998, 3340
HindII GTYRAC 9 cut(s) 69, 418, 1483, 2162, 2542, 2575, 2590, 2998, 3340
HindIII AAGCTT 7 cut(s) 311, 601, 1393, 1469, 1588, 2195, 2474
HpaI GTTAAC 2 cut(s) 418, 1483
HpaII CCGG 1 cut(s) 804
HphI GGTGA 4 cut(s) 454, 655, 1149, 2432
Hpy99I CGWCG 1 cut(s) 1056
HpyCH4III ACNGT 6 cut(s) 73, 655, 1545, 1866, 2113, 2652
HpyCH4IV ACGT 1 cut(s) 1054
HpyF10VI GCNNNNNNNGC 7 cut(s) 835, 1248, 1756, 2230, 2781, 2845, 2932
HpyF3I CTNAG 9 cut(s) 7, 1343, 1556, 2386, 2450, 2645, 2656, 2840, 3291
HpySE526I ACGT 1 cut(s) 1054
KpnI GGTACC 1 cut(s) 2621
Ksp22I TGATCA 1 cut(s) 879
KspAI GTTAAC 2 cut(s) 418, 1483
LguI GCTCTTC 1 cut(s) 1680
Lsp1109I GCAGC 6 cut(s) 344, 491, 752, 850, 1682, 2935
LweI GCATC 3 cut(s) 247, 902, 1452
MabI ACCWGGT 1 cut(s) 4137
MaeII ACGT 1 cut(s) 1054
MaeIII GTNAC 6 cut(s) 1234, 2438, 3011, 3047, 3457, 4129
MfeI CAATTG 1 cut(s) 3563
MflI RGATCY 3 cut(s) 55, 326, 1831
MhlI GDGCHC 2 cut(s) 811, 3252
MlyI GAGTC 4 cut(s) 1252, 2758, 2843, 3475
MmeI TCCRAC 6 cut(s) 699, 836, 1410, 1820, 2166, 4104
Mph1103I ATGCAT 3 cut(s) 796, 1467, 3329
MroXI GAANNNNTTC 4 cut(s) 192, 2196, 2349, 3084
MslI CAYNNNNRTG 5 cut(s) 858, 870, 1337, 1740, 3144
MspA1I CMGCKG 1 cut(s) 4073
MspCI CTTAAG 2 cut(s) 1396, 1886
MspI CCGG 1 cut(s) 804
MspR9I CCNGG 8 cut(s) 491, 689, 1177, 2561, 3585, 3629, 3779, 4139
MssI GTTTAAAC 1 cut(s) 1785
MunI CAATTG 1 cut(s) 3563
Mva1269I GAATGC 2 cut(s) 1131, 3329
MvaI CCWGG 8 cut(s) 491, 689, 1177, 2561, 3585, 3629, 3779, 4139
MwoI GCNNNNNNNGC 7 cut(s) 835, 1248, 1756, 2230, 2781, 2845, 2932
NdeI CATATG 2 cut(s) 2079, 2568
NlaIV GGNNCC 6 cut(s) 57, 472, 2225, 2527, 2619, 2872
NmeAIII GCCGAG 2 cut(s) 321, 1795
NmuCI GTSAC 5 cut(s) 2438, 3011, 3047, 3457, 4129
NsiI ATGCAT 3 cut(s) 796, 1467, 3329
NspI RCATGY 5 cut(s) 985, 1242, 3644, 3794, 3944
NspV TTCGAA 3 cut(s) 1474, 1869, 3675
PaeI GCATGC 1 cut(s) 985
PaqCI CACCTGC 1 cut(s) 3443
PciI ACATGT 3 cut(s) 3640, 3790, 3940
PciSI GCTCTTC 1 cut(s) 1680
PcsI WCGNNNNNNNCGW 1 cut(s) 1969
PctI GAATGC 2 cut(s) 1131, 3329
PdmI GAANNNNTTC 4 cut(s) 192, 2196, 2349, 3084
PflFI GACNNNGTC 1 cut(s) 4139
PfoI TCCNGGA 1 cut(s) 2559
PinAI ACCGGT 1 cut(s) 803
PkrI GCNGC 6 cut(s) 334, 506, 742, 840, 1672, 2925
PleI GAGTC 4 cut(s) 1252, 2757, 2842, 3475
PmeI GTTTAAAC 1 cut(s) 1785
PpsI GAGTC 4 cut(s) 1252, 2757, 2842, 3475
PscI ACATGT 3 cut(s) 3640, 3790, 3940
Psp6I CCWGG 8 cut(s) 489, 687, 1175, 2559, 3583, 3627, 3777, 4137
PspFI CCCAGC 2 cut(s) 2426, 3612
PspGI CCWGG 8 cut(s) 489, 687, 1175, 2559, 3583, 3627, 3777, 4137
PspN4I GGNNCC 6 cut(s) 57, 472, 2225, 2527, 2619, 2872
PspPI GGNCC 2 cut(s) 964, 1891
PstI CTGCAG 1 cut(s) 334
PsuI RGATCY 3 cut(s) 55, 326, 1831
PsyI GACNNNGTC 1 cut(s) 4139
PvuII CAGCTG 1 cut(s) 4073
RsaI GTAC 9 cut(s) 13, 519, 657, 1230, 1305, 2619, 2703, 3218, 3426
RsaNI GTAC 9 cut(s) 12, 518, 656, 1229, 1304, 2618, 2702, 3217, 3425
RseI CAYNNNNRTG 5 cut(s) 858, 870, 1337, 1740, 3144
SalI GTCGAC 2 cut(s) 2160, 2573
SapI GCTCTTC 1 cut(s) 1680
SatI GCNGC 6 cut(s) 333, 505, 741, 839, 1671, 2924
Sau96I GGNCC 2 cut(s) 964, 1891
ScaI AGTACT 1 cut(s) 2703
SchI GAGTC 4 cut(s) 1252, 2758, 2843, 3475
ScrFI CCNGG 8 cut(s) 491, 689, 1177, 2561, 3585, 3629, 3779, 4139
SduI GDGCHC 2 cut(s) 811, 3252
SexAI ACCWGGT 1 cut(s) 4137
SfaNI GCATC 3 cut(s) 247, 902, 1452
SfcI CTRYAG 3 cut(s) 330, 1845, 4028
SfuI TTCGAA 3 cut(s) 1474, 1869, 3675
SinI GGWCC 1 cut(s) 964
SmiMI CAYNNNNRTG 5 cut(s) 858, 870, 1337, 1740, 3144
SmlI CTYRAG 9 cut(s) 1396, 1406, 1610, 1886, 2486, 2504, 2714, 2941, 3311
SmoI CTYRAG 9 cut(s) 1396, 1406, 1610, 1886, 2486, 2504, 2714, 2941, 3311
SphI GCATGC 1 cut(s) 985
SsiI CCGC 2 cut(s) 439, 2782
StyD4I CCNGG 8 cut(s) 489, 687, 1175, 2559, 3583, 3627, 3777, 4137
StyI CCWWGG 5 cut(s) 552, 1286, 1308, 1497, 1599
TaaI ACNGT 6 cut(s) 73, 655, 1545, 1866, 2113, 2652
TaiI ACGT 1 cut(s) 1057
TaqI TCGA 7 cut(s) 264, 1474, 1869, 2092, 2161, 2574, 3675
TaqII GACCGA 2 cut(s) 830, 4148
TatI WGTACW 3 cut(s) 517, 2701, 3216
TscAI CASTG 5 cut(s) 2613, 3052, 3191, 3468, 3546
TseFI GTSAC 5 cut(s) 2438, 3011, 3047, 3457, 4129
TseI GCWGC 6 cut(s) 332, 504, 740, 838, 1670, 2923
Tsp45I GTSAC 5 cut(s) 2438, 3011, 3047, 3457, 4129
TspGWI ACGGA 2 cut(s) 557, 1154
TspRI CASTG 5 cut(s) 2613, 3052, 3191, 3468, 3546
Tth111I GACNNNGTC 1 cut(s) 4139
Vha464I CTTAAG 2 cut(s) 1396, 1886
VpaK11BI GGWCC 1 cut(s) 964
XbaI TCTAGA 2 cut(s) 1828, 2830
XceI RCATGY 5 cut(s) 985, 1242, 3644, 3794, 3944
XcmI CCANNNNNNNNNTGG 1 cut(s) 625
XmaJI CCTAGG 1 cut(s) 1286
XmiI GTMKAC 2 cut(s) 2161, 2574
XmnI GAANNNNTTC 4 cut(s) 192, 2196, 2349, 3084
ZrmI AGTACT 1 cut(s) 2703
Zsp2I ATGCAT 3 cut(s) 796, 1467, 3329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.