AT5G17460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011470
Physical Location & Seq
Reverse (-)
5757073 .. 5759817
2745 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17460.4

Sequence Viewer

Length: 930 bp
ATGTTCGCGCGAAGACTCTCCTCTCTATTCTCTATCGTAACCAAAAGATCACAAAGTCGCTTGCTTTCGTGTCCGACAACTTCTGCTCAAAATTGGGTATTTGCTGAGTTTCGTCAGACTATACAAGCAACTCGATTTTATGCAAGTGGAAGAGGAAAAGACTACAATCTATTTGGTAATGTGAAACCAGGTGATGATGACTTTAGAAAAACATGGGAGAAAGAAATGGAGGATGATGATACTCTATGGTCAGGAAGTGAAGACGAAAGCAATGATAAGACAAAACAAGAAAGCGGAAGAAACCGTCTTGAAAAAGAGATTAAGAAAGCTAGACAACAAGCTAAGGATAGCACCGATCAAATTGATGGAGATGATAGTGATGAATTGTACAGCGTTTGGTCAGGAAGTGATGAGGAAAAAACGCTGTGGACTGGCGATGAAGGTGATGATGACGACGATATTCCAACAGAGCCACGCCCGAACGAGGCATCTGATAAATACTTAGATAAGTTGTTTGAGTTTGAGGAGAAACCAAAGTACAGGACAATCTCAGAGTTGTTGAAATCTGAAAATGAACCTGAGGAGCTTTCACCCGGTAAAAAGGCGAGGAAGCTTGCTGTTGAGAACGCGTTGAAGAAACTGAATAAAGGGCCTGATGGGCGCTACACAAACGTGTGGGAAGTAATGAGTGATGTTGACATTCTGATTGGAGCATTTGAAAACATTATCTCGGGACCTGAGTATGAAGAGCTAAGAAAAGGTGGACCCAAGAGACTGAACATGCAGTTCTTCAAGGATATACAAACTCGAATGAGAGATCCAAACTTCAAGTTCACACCTGAAATAAAGTTGAAGCCAAAGAGTAAACTAGTGCCTAGGAAGAAATGGCAGAAGGCACAGTCCAGAATAAGGAAAGCGAAGAAGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

35.92

Weight (kDa)

7.62

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17460 AT5G17460 AT5G17460 AT5G17460 AT5G17460
fragaria_vesca FvH4_1g30050
malus_domestica MD09G1260700.v1.1 MD09G1260800.v1.1
prunus_persica Prupe.3G152500_v2.0.a1
pyrus_communis pycom09g17520
rosa_chinensis RchiOBHm_Chr3g0492091
rosa_laevigata RLG00000022794
rosa_multiflora Rmu_sc0021983.1_g000002
rosa_roxburghii Rroxscaffold_6G00392540
rosa_rugosa Rorug03G0251900
rosa_samantha Rh3AG302000 Rh3BG337900 Rh3CG335400 Rh3DG337500
rosa_wichuraiana Rw3G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 8, 10, 629
AciI CCGC 2 cut(s) 294, 925
AclWI GGATC 1 cut(s) 812
AfaI GTAC 2 cut(s) 389, 539
AfiI CCNNNNNNNGG 2 cut(s) 484, 909
AflIII ACRYGT 2 cut(s) 627, 672
AgsI TTSAA 7 cut(s) 311, 562, 634, 719, 793, 829, 853
AhlI ACTAGT 1 cut(s) 868
AjnI CCWGG 1 cut(s) 187
AleI CACNNNNGTG 1 cut(s) 671
AluBI AGCT 5 cut(s) 329, 341, 586, 613, 751
AluI AGCT 5 cut(s) 329, 341, 586, 613, 751
Alw26I GTCTC 1 cut(s) 766
AlwI GGATC 1 cut(s) 812
Ama87I CYCGRG 1 cut(s) 730
AoxI GGCC 1 cut(s) 650
AspA2I CCTAGG 1 cut(s) 875
AspLEI GCGC 2 cut(s) 10, 663
AspS9I GGNCC 3 cut(s) 650, 734, 764
AsuC2I CCSGG 1 cut(s) 594
AsuHPI GGTGA 3 cut(s) 203, 455, 582
AvaI CYCGRG 1 cut(s) 730
AvaII GGWCC 2 cut(s) 734, 764
AvrII CCTAGG 1 cut(s) 875
AxyI CCTNAGG 1 cut(s) 579
BbsI GAAGAC 2 cut(s) 19, 267
BccI CCATC 2 cut(s) 359, 650
BciT130I CCWGG 1 cut(s) 189
BcnI CCSGG 1 cut(s) 594
BcoDI GTCTC 1 cut(s) 766
BcuI ACTAGT 1 cut(s) 868
BfaI CTAG 3 cut(s) 330, 869, 876
BfoI RGCGCY 1 cut(s) 664
BglI GCCNNNNNGGC 1 cut(s) 658
BlnI CCTAGG 1 cut(s) 875
Bme1390I CCNGG 2 cut(s) 189, 594
Bme18I GGWCC 2 cut(s) 734, 764
BmeT110I CYCGRG 1 cut(s) 730
BmgT120I GGNCC 3 cut(s) 650, 734, 764
BmiI GGNNCC 2 cut(s) 735, 766
BmrFI CCNGG 2 cut(s) 189, 594
BmsI GCATC 1 cut(s) 497
BpiI GAAGAC 2 cut(s) 19, 267
Bpu10I CCTNAGC 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 875
Bsc4I CCNNNNNNNGG 2 cut(s) 484, 909
Bse1I ACTGG 1 cut(s) 436
Bse21I CCTNAGG 1 cut(s) 579
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 875
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 2 cut(s) 484, 909
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 4 cut(s) 96, 564, 570, 729
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 3 cut(s) 10, 539, 596
Bsh1236I CGCG 3 cut(s) 8, 10, 629
BshFI GGCC 1 cut(s) 652
BsiHKCI CYCGRG 1 cut(s) 730
BsiSI CCGG 1 cut(s) 594
BslFI GGGAC 1 cut(s) 747
BslI CCNNNNNNNGG 2 cut(s) 484, 909
BsmAI GTCTC 1 cut(s) 766
BsmFI GGGAC 1 cut(s) 747
BsnI GGCC 1 cut(s) 652
BsoBI CYCGRG 1 cut(s) 730
Bsp1407I TGTACA 1 cut(s) 387
Bsp143I GATC 3 cut(s) 47, 355, 817
BspACI CCGC 2 cut(s) 294, 925
BspANI GGCC 1 cut(s) 652
BspCNI CTCAG 4 cut(s) 97, 563, 571, 730
BspFNI CGCG 3 cut(s) 8, 10, 629
BspLI GGNNCC 2 cut(s) 735, 766
BspPI GGATC 1 cut(s) 812
BspQI GCTCTTC 1 cut(s) 741
BsrDI GCAATG 1 cut(s) 277
BsrGI TGTACA 1 cut(s) 387
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 1 cut(s) 875
BssMI GATC 3 cut(s) 47, 355, 817
BssT1I CCWWGG 1 cut(s) 875
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 305, 900
Bst6I CTCTTC 2 cut(s) 145, 741
BstAUI TGTACA 1 cut(s) 387
BstC8I GCNNGC 2 cut(s) 62, 615
BstDEI CTNAG 7 cut(s) 105, 342, 502, 550, 579, 738, 752
BstF5I GGATG 1 cut(s) 238
BstFNI CGCG 3 cut(s) 8, 10, 629
BstH2I RGCGCY 1 cut(s) 664
BstHHI GCGC 2 cut(s) 10, 663
BstKTI GATC 3 cut(s) 50, 358, 820
BstMAI GTCTC 1 cut(s) 766
BstMBI GATC 3 cut(s) 47, 355, 817
BstMWI GCNNNNNNNGC 1 cut(s) 658
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 784
BstSCI CCNGG 2 cut(s) 187, 592
BstUI CGCG 3 cut(s) 8, 10, 629
BstV2I GAAGAC 2 cut(s) 19, 267
BstX2I RGATCY 1 cut(s) 817
BstYI RGATCY 1 cut(s) 817
Bsu36I CCTNAGG 1 cut(s) 579
BsuRI GGCC 1 cut(s) 652
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 62, 615
CfoI GCGC 2 cut(s) 10, 663
Cfr13I GGNCC 3 cut(s) 650, 734, 764
CsiI ACCWGGT 1 cut(s) 187
Csp6I GTAC 2 cut(s) 388, 538
CviAII CATG 2 cut(s) 213, 781
CviJI RGCY 8 cut(s) 329, 341, 472, 586, 613, 652, 751, 856
CviKI_1 RGCY 8 cut(s) 329, 341, 472, 586, 613, 652, 751, 856
CviQI GTAC 2 cut(s) 388, 538
DdeI CTNAG 7 cut(s) 105, 342, 502, 550, 579, 738, 752
DpnI GATC 3 cut(s) 49, 357, 819
DpnII GATC 3 cut(s) 47, 355, 817
Eam1104I CTCTTC 2 cut(s) 145, 741
EarI CTCTTC 2 cut(s) 145, 741
Eco130I CCWWGG 1 cut(s) 875
Eco47I GGWCC 2 cut(s) 734, 764
Eco81I CCTNAGG 1 cut(s) 579
Eco88I CYCGRG 1 cut(s) 730
EcoO109I RGGNCCY 2 cut(s) 650, 734
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 875
ErhI CCWWGG 1 cut(s) 875
FaeI CATG 2 cut(s) 216, 784
FaiI YATR 7 cut(s) 122, 141, 214, 247, 744, 782, 800
FaqI GGGAC 1 cut(s) 747
FatI CATG 2 cut(s) 212, 780
FokI GGATG 1 cut(s) 245
FspBI CTAG 3 cut(s) 330, 869, 876
GlaI GCGC 2 cut(s) 9, 662
HaeII RGCGCY 1 cut(s) 664
HaeIII GGCC 1 cut(s) 652
HapII CCGG 1 cut(s) 594
HhaI GCGC 2 cut(s) 10, 663
Hin1II CATG 2 cut(s) 216, 784
Hin6I GCGC 2 cut(s) 8, 661
HinP1I GCGC 2 cut(s) 8, 661
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 1 cut(s) 15
HpaII CCGG 1 cut(s) 594
HphI GGTGA 3 cut(s) 203, 455, 582
Hpy166II GTNNAC 5 cut(s) 429, 697, 764, 834, 866
Hpy188I TCNGA 6 cut(s) 75, 117, 493, 553, 568, 705
Hpy188III TCNNGA 5 cut(s) 252, 308, 402, 732, 903
Hpy8I GTNNAC 5 cut(s) 429, 697, 764, 834, 866
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 2 cut(s) 434, 886
HpyCH4III ACNGT 2 cut(s) 305, 900
HpyCH4IV ACGT 1 cut(s) 672
HpyCH4V TGCA 2 cut(s) 143, 784
HpyF10VI GCNNNNNNNGC 1 cut(s) 658
HpyF3I CTNAG 7 cut(s) 105, 342, 502, 550, 579, 738, 752
HpySE526I ACGT 1 cut(s) 672
Hsp92II CATG 2 cut(s) 216, 784
HspAI GCGC 2 cut(s) 8, 661
Kzo9I GATC 3 cut(s) 47, 355, 817
LguI GCTCTTC 1 cut(s) 741
LmnI GCTCC 2 cut(s) 583, 710
LweI GCATC 1 cut(s) 497
MabI ACCWGGT 1 cut(s) 187
MaeI CTAG 3 cut(s) 330, 869, 876
MaeII ACGT 1 cut(s) 672
MaeIII GTNAC 1 cut(s) 37
MalI GATC 3 cut(s) 49, 357, 819
MboI GATC 3 cut(s) 47, 355, 817
MboII GAAGA 8 cut(s) 24, 162, 272, 309, 646, 758, 781, 892
MflI RGATCY 1 cut(s) 817
MluCI AATT 3 cut(s) 91, 360, 383
MluI ACGCGT 1 cut(s) 627
MlyI GAGTC 1 cut(s) 9
MmeI TCCRAC 2 cut(s) 98, 488
MnlI CCTC 8 cut(s) 31, 146, 223, 406, 478, 517, 574, 600
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 671
MspI CCGG 1 cut(s) 594
MspR9I CCNGG 2 cut(s) 189, 594
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 3 cut(s) 8, 10, 629
MwoI GCNNNNNNNGC 1 cut(s) 658
NciI CCSGG 1 cut(s) 594
NdeII GATC 3 cut(s) 47, 355, 817
NlaIII CATG 2 cut(s) 216, 784
NlaIV GGNNCC 2 cut(s) 735, 766
NspI RCATGY 1 cut(s) 784
OliI CACNNNNGTG 1 cut(s) 671
PciSI GCTCTTC 1 cut(s) 741
PleI GAGTC 1 cut(s) 9
PpsI GAGTC 1 cut(s) 9
PpuMI RGGWCCY 1 cut(s) 734
Psp5II RGGWCCY 1 cut(s) 734
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 735, 766
PspPI GGNCC 3 cut(s) 650, 734, 764
PspPPI RGGWCCY 1 cut(s) 734
PsuI RGATCY 1 cut(s) 817
RsaI GTAC 2 cut(s) 389, 539
RsaNI GTAC 2 cut(s) 388, 538
RseI CAYNNNNRTG 1 cut(s) 671
SapI GCTCTTC 1 cut(s) 741
SaqAI TTAA 1 cut(s) 321
Sau3AI GATC 3 cut(s) 47, 355, 817
Sau96I GGNCC 3 cut(s) 650, 734, 764
SchI GAGTC 1 cut(s) 9
ScrFI CCNGG 2 cut(s) 189, 594
SexAI ACCWGGT 1 cut(s) 187
SfaNI GCATC 1 cut(s) 497
SinI GGWCC 2 cut(s) 734, 764
SmiMI CAYNNNNRTG 1 cut(s) 671
SpeI ACTAGT 1 cut(s) 868
Sse9I AATT 3 cut(s) 91, 360, 383
SsiI CCGC 2 cut(s) 294, 925
SspMI CTAG 3 cut(s) 330, 869, 876
StyD4I CCNGG 2 cut(s) 187, 592
StyI CCWWGG 1 cut(s) 875
TaaI ACNGT 2 cut(s) 305, 900
TaiI ACGT 1 cut(s) 675
TaqI TCGA 2 cut(s) 133, 808
TasI AATT 3 cut(s) 91, 360, 383
TatI WGTACW 2 cut(s) 387, 537
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TspDTI ATGAA 4 cut(s) 396, 453, 588, 759
VpaK11BI GGWCC 2 cut(s) 734, 764
XceI RCATGY 1 cut(s) 784
XmaJI CCTAGG 1 cut(s) 875
XspI CTAG 3 cut(s) 330, 869, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.