RchiOBHm_Chr3g0492091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011470
Physical Location & Seq
Reverse (-)
38844021 .. 38846284
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45498

Sequence Viewer

Length: 960 bp
ATGGCTCGGAGGCTCCGTTCCTTTATTTCCCTCAATTCTTCTTGTCTTTGCAAACTCCCAAAACCCCAAATGCAGCCTTCACTGCTGCTTCCAAGATTAGAATACCCATCTGATTCTGCTTTAACAACTTCAACAGGTCCCTGTGGGTTGTCTCCAAGTTTTCAAGCTTCACGATCATATGCTCGTGGTGATCGTAAATATTATGATCTTTTTGGCAATGGAAAACCTGGTGACAAGGATTTCAGGAAAGCCTGGAAGAAAGAAATTAAGGAAGACGATTGTTTATGGACAGGTAGTGAAGATGAGAAAGATGATGGAAAGGATAAAAAGAGTCATCTGGAAGAAGAGATCCAAAAAGCTAAACAGCAGGCAAGGGAGCACTCTGACCTGATCGATGCCGATGATAGTGATGAGTTGAGAAGTGTTTGGTCTGGAAGTGATGAGGAGAAGTCCCTGTGGACTGGTAGTGAAGGTGATGATGATGATGATATTCCTACTGAAGCCTACCCAAATGAAAGTAGTGACAAATACATAGATAAGCTGTTTGAATTTGAGGAAACATCAAAGTACCGGACAATCTCAGAATTATTAAAAGCAGAACAAGAACCAGAGGAGCTTTCACCTGGAAAGCAAGCCAGGAAAATTGCAGTTGAGAATGCATTGAAAAAGTTGAAGAAAGGGCCAGACGGGAGATATGTTAATGTATGGGAAGTCATGAGTGACCTAGATATTCTAATAGGAGCATTTGAAAATATAGTTTCAGGACCAGAATATGCAGAGCTGAGGCATGGGGGGCCTAAGAAATTAAATATGCAGTTCTTCAAGGATATACAAGCGCGCATGAGAGATCCAAATTATAAGTTCTCGCCTGAGTTGAAGCTGAAACCGAAGAGCAAACTAGTTCCGAAAAAGAAATGGCAGAAGACACAGTCTAGGCGGAGGAAAGCACAAAAGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

36.65

Weight (kDa)

8.11

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17460 AT5G17460 AT5G17460 AT5G17460 AT5G17460
fragaria_vesca FvH4_1g30050
malus_domestica MD09G1260700.v1.1 MD09G1260800.v1.1
prunus_persica Prupe.3G152500_v2.0.a1
pyrus_communis pycom09g17520
rosa_chinensis RchiOBHm_Chr3g0492091
rosa_laevigata RLG00000022794
rosa_multiflora Rmu_sc0021983.1_g000002
rosa_roxburghii Rroxscaffold_6G00392540
rosa_rugosa Rorug03G0251900
rosa_samantha Rh3AG302000 Rh3BG337900 Rh3CG335400 Rh3DG337500
rosa_wichuraiana Rw3G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 858
AccII CGCG 1 cut(s) 838
AciI CCGC 1 cut(s) 937
AclWI GGATC 2 cut(s) 343, 842
AcsI RAATTY 1 cut(s) 548
AcuI CTGAAG 1 cut(s) 519
AfaI GTAC 1 cut(s) 569
AfeI AGCGCT 1 cut(s) 956
AgsI TTSAA 8 cut(s) 132, 164, 548, 664, 673, 749, 823, 877
AhlI ACTAGT 1 cut(s) 898
AjnI CCWGG 4 cut(s) 226, 251, 622, 635
AloI GAACNNNNNNTCC 1 cut(s) 33
AluBI AGCT 6 cut(s) 167, 359, 541, 616, 781, 880
AluI AGCT 6 cut(s) 167, 359, 541, 616, 781, 880
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 2 cut(s) 343, 842
Aor51HI AGCGCT 1 cut(s) 956
AoxI GGCC 2 cut(s) 680, 794
ApeKI GCWGC 2 cut(s) 73, 85
ApoI RAATTY 1 cut(s) 548
AspLEI GCGC 3 cut(s) 838, 840, 957
AspS9I GGNCC 4 cut(s) 137, 680, 764, 794
AsuHPI GGTGA 4 cut(s) 200, 242, 485, 612
AvaII GGWCC 2 cut(s) 137, 764
BauI CACGAG 1 cut(s) 183
BbsI GAAGAC 2 cut(s) 279, 929
Bbv12I GWGCWC 1 cut(s) 381
BbvCI CCTCAGC 1 cut(s) 782
BbvI GCAGC 2 cut(s) 72, 85
BccI CCATC 2 cut(s) 115, 308
BciT130I CCWGG 4 cut(s) 228, 253, 624, 637
BcoDI GTCTC 1 cut(s) 156
BcuI ACTAGT 1 cut(s) 898
BfaI CTAG 3 cut(s) 725, 899, 933
BfoI RGCGCY 1 cut(s) 958
BisI GCNGC 2 cut(s) 74, 86
BlsI GCNGC 2 cut(s) 75, 87
Bme1390I CCNGG 4 cut(s) 228, 253, 624, 637
Bme18I GGWCC 2 cut(s) 137, 764
BmgT120I GGNCC 4 cut(s) 137, 680, 764, 794
BmiI GGNNCC 3 cut(s) 14, 139, 795
BmrFI CCNGG 4 cut(s) 228, 253, 624, 637
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 2 cut(s) 279, 929
Bpu10I CCTNAGC 1 cut(s) 782
Bsa29I ATCGAT 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 570
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 466
Bse3DI GCAATG 1 cut(s) 223
BseBI CCWGG 4 cut(s) 228, 253, 624, 637
BseCI ATCGAT 1 cut(s) 393
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 3 cut(s) 594, 773, 861
BseNI ACTGG 1 cut(s) 466
BsePI GCGCGC 1 cut(s) 836
BseRI GAGGAG 2 cut(s) 458, 626
BseXI GCAGC 2 cut(s) 72, 85
Bsh1236I CGCG 1 cut(s) 838
BshFI GGCC 2 cut(s) 682, 796
BshVI ATCGAT 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 1 cut(s) 571
BslFI GGGAC 2 cut(s) 123, 436
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 2 cut(s) 123, 436
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 2 cut(s) 682, 796
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 6 cut(s) 173, 190, 205, 348, 390, 847
BspACI CCGC 1 cut(s) 937
BspANI GGCC 2 cut(s) 682, 796
BspCNI CTCAG 3 cut(s) 593, 774, 862
BspDI ATCGAT 1 cut(s) 393
BspFNI CGCG 1 cut(s) 838
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 3 cut(s) 14, 139, 795
BspPI GGATC 2 cut(s) 343, 842
BspQI GCTCTTC 1 cut(s) 884
BsrDI GCAATG 1 cut(s) 223
BsrI ACTGG 1 cut(s) 466
BssHII GCGCGC 1 cut(s) 836
BssMI GATC 6 cut(s) 173, 190, 205, 348, 390, 847
BssSI CACGAG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 183
Bst2UI CCWGG 4 cut(s) 228, 253, 624, 637
Bst4CI ACNGT 1 cut(s) 930
Bst6I CTCTTC 2 cut(s) 339, 884
BstC8I GCNNGC 3 cut(s) 369, 633, 838
BstDEI CTNAG 4 cut(s) 580, 782, 798, 870
BstFNI CGCG 1 cut(s) 838
BstH2I RGCGCY 1 cut(s) 958
BstHHI GCGC 3 cut(s) 838, 840, 957
BstKTI GATC 6 cut(s) 176, 193, 208, 351, 393, 850
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 6 cut(s) 173, 190, 205, 348, 390, 847
BstMWI GCNNNNNNNGC 2 cut(s) 82, 793
BstNI CCWGG 4 cut(s) 228, 253, 624, 637
BstSCI CCNGG 4 cut(s) 226, 251, 622, 635
BstUI CGCG 1 cut(s) 838
BstV1I GCAGC 2 cut(s) 72, 85
BstV2I GAAGAC 2 cut(s) 279, 929
BstX2I RGATCY 2 cut(s) 348, 847
BstYI RGATCY 2 cut(s) 348, 847
Bsu15I ATCGAT 1 cut(s) 393
BsuRI GGCC 2 cut(s) 682, 796
BsuTUI ATCGAT 1 cut(s) 393
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 3 cut(s) 369, 633, 838
CciI TCATGA 1 cut(s) 714
CfoI GCGC 3 cut(s) 838, 840, 957
Cfr13I GGNCC 4 cut(s) 137, 680, 764, 794
ClaI ATCGAT 1 cut(s) 393
CsiI ACCWGGT 1 cut(s) 226
Csp6I GTAC 1 cut(s) 568
CviAII CATG 3 cut(s) 715, 788, 841
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 4 cut(s) 580, 782, 798, 870
DpnI GATC 6 cut(s) 175, 192, 207, 350, 392, 849
DpnII GATC 6 cut(s) 173, 190, 205, 348, 390, 847
Eam1104I CTCTTC 2 cut(s) 339, 884
EarI CTCTTC 2 cut(s) 339, 884
EciI GGCGGA 1 cut(s) 952
Eco47I GGWCC 2 cut(s) 137, 764
Eco47III AGCGCT 1 cut(s) 956
Eco57I CTGAAG 1 cut(s) 519
EcoO109I RGGNCCY 2 cut(s) 137, 794
EcoRII CCWGG 4 cut(s) 226, 251, 622, 635
EcoT22I ATGCAT 1 cut(s) 661
FaeI CATG 3 cut(s) 718, 791, 844
FaqI GGGAC 2 cut(s) 123, 436
FatI CATG 3 cut(s) 714, 787, 840
FauNDI CATATG 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 74, 86
Fsp4HI GCNGC 2 cut(s) 74, 86
FspBI CTAG 3 cut(s) 725, 899, 933
GlaI GCGC 3 cut(s) 837, 839, 956
GluI GCNGC 2 cut(s) 74, 86
HaeII RGCGCY 1 cut(s) 958
HaeIII GGCC 2 cut(s) 682, 796
HapII CCGG 1 cut(s) 571
HhaI GCGC 3 cut(s) 838, 840, 957
Hin1II CATG 3 cut(s) 718, 791, 844
Hin6I GCGC 3 cut(s) 836, 838, 955
HinP1I GCGC 3 cut(s) 836, 838, 955
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 2 cut(s) 113, 331
HpaII CCGG 1 cut(s) 571
HphI GGTGA 4 cut(s) 200, 242, 485, 612
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 5 cut(s) 9, 112, 385, 583, 906
Hpy188III TCNNGA 6 cut(s) 171, 244, 338, 432, 715, 762
Hpy8I GTNNAC 1 cut(s) 459
HpyAV CCTTC 2 cut(s) 87, 464
HpyCH4III ACNGT 1 cut(s) 930
HpyCH4V TGCA 6 cut(s) 51, 73, 647, 659, 776, 814
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 793
HpyF3I CTNAG 4 cut(s) 580, 782, 798, 870
Hsp92II CATG 3 cut(s) 718, 791, 844
HspAI GCGC 3 cut(s) 836, 838, 955
Kzo9I GATC 6 cut(s) 173, 190, 205, 348, 390, 847
LguI GCTCTTC 1 cut(s) 884
LmnI GCTCC 4 cut(s) 18, 376, 613, 740
Lsp1109I GCAGC 2 cut(s) 72, 85
LweI GCATC 1 cut(s) 385
MabI ACCWGGT 1 cut(s) 226
MaeI CTAG 3 cut(s) 725, 899, 933
MaeIII GTNAC 3 cut(s) 230, 521, 719
MalI GATC 6 cut(s) 175, 192, 207, 350, 392, 849
MboI GATC 6 cut(s) 173, 190, 205, 348, 390, 847
MflI RGATCY 2 cut(s) 348, 847
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 7 cut(s) 34, 264, 548, 584, 642, 803, 853
MlyI GAGTC 1 cut(s) 340
MnlI CCTC 7 cut(s) 3, 41, 436, 547, 604, 777, 933
Mph1103I ATGCAT 1 cut(s) 661
MseI TTAA 5 cut(s) 122, 267, 590, 699, 806
MspI CCGG 1 cut(s) 571
MspR9I CCNGG 4 cut(s) 228, 253, 624, 637
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 4 cut(s) 228, 253, 624, 637
MvnI CGCG 1 cut(s) 838
MwoI GCNNNNNNNGC 2 cut(s) 82, 793
NdeI CATATG 1 cut(s) 178
NdeII GATC 6 cut(s) 173, 190, 205, 348, 390, 847
NlaIII CATG 3 cut(s) 718, 791, 844
NlaIV GGNNCC 3 cut(s) 14, 139, 795
NmuCI GTSAC 3 cut(s) 230, 521, 719
NsiI ATGCAT 1 cut(s) 661
PagI TCATGA 1 cut(s) 714
PauI GCGCGC 1 cut(s) 836
PciSI GCTCTTC 1 cut(s) 884
PcsI WCGNNNNNNNCGW 2 cut(s) 13, 190
PctI GAATGC 1 cut(s) 661
PfeI GAWTC 1 cut(s) 113
PflFI GACNNNGTC 1 cut(s) 928
PkrI GCNGC 2 cut(s) 75, 87
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
PpuMI RGGWCCY 1 cut(s) 137
PsiI TTATAA 1 cut(s) 858
Psp5II RGGWCCY 1 cut(s) 137
Psp6I CCWGG 4 cut(s) 226, 251, 622, 635
PspGI CCWGG 4 cut(s) 226, 251, 622, 635
PspN4I GGNNCC 3 cut(s) 14, 139, 795
PspPI GGNCC 4 cut(s) 137, 680, 764, 794
PspPPI RGGWCCY 1 cut(s) 137
PsuI RGATCY 2 cut(s) 348, 847
PsyI GACNNNGTC 1 cut(s) 928
PteI GCGCGC 1 cut(s) 836
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
SapI GCTCTTC 1 cut(s) 884
SaqAI TTAA 5 cut(s) 122, 267, 590, 699, 806
SatI GCNGC 2 cut(s) 74, 86
Sau3AI GATC 6 cut(s) 173, 190, 205, 348, 390, 847
Sau96I GGNCC 4 cut(s) 137, 680, 764, 794
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 4 cut(s) 228, 253, 624, 637
SduI GDGCHC 1 cut(s) 381
SexAI ACCWGGT 1 cut(s) 226
SfaNI GCATC 1 cut(s) 385
SinI GGWCC 2 cut(s) 137, 764
SpeI ACTAGT 1 cut(s) 898
Sse9I AATT 7 cut(s) 34, 264, 548, 584, 642, 803, 853
SsiI CCGC 1 cut(s) 937
SspI AATATT 1 cut(s) 200
SspMI CTAG 3 cut(s) 725, 899, 933
StyD4I CCNGG 4 cut(s) 226, 251, 622, 635
TaaI ACNGT 1 cut(s) 930
TaqI TCGA 1 cut(s) 393
TasI AATT 7 cut(s) 34, 264, 548, 584, 642, 803, 853
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 5 cut(s) 122, 267, 590, 699, 806
Tru9I TTAA 5 cut(s) 122, 267, 590, 699, 806
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 3 cut(s) 230, 521, 719
TseI GCWGC 2 cut(s) 73, 85
Tsp45I GTSAC 3 cut(s) 230, 521, 719
TspDTI ATGAA 1 cut(s) 528
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 1 cut(s) 87
Tth111I GACNNNGTC 1 cut(s) 928
VpaK11BI GGWCC 2 cut(s) 137, 764
XapI RAATTY 1 cut(s) 548
XspI CTAG 3 cut(s) 725, 899, 933
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.