FvH4_1g30050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011470
Physical Location & Seq
Forward (+)
23797810 .. 23800280
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g30050.t1

Sequence Viewer

Length: 942 bp
ATGGCTTGGAGGCTTCGTTCCCTCTTTTCCCTTAATTCTTGTCTCTGCAAAGTCCCAAAACCCCAGATTCTTCCGAGATTGGAGTATCCGTCTGATTCTGCTTTAAGCACATCAGCAACTCACTATGGGTTTCGTCCATGTTTTCAAGCTTCACGATCATATGCTCGTGGTAATCATAAGTATTATGATCTTTTTGGGAATGGAAAACCTGGTGACAAGGATTTAAGGAAAGCCTGGAACAAAGAAACTAAAGAAGATGATTGCTTATGGACAGGCAGTGAAGATGAGAAAGATGACGGAAAGGATGACAAGAGTCATCTGGAAGAAGAGATCCGAAAAGTTAAACAGCAGGCAAGGGAGCACTCTGACCTAATCGATGCCGATGATAGTGATGAGTTGAGAAGTGTTTGGTCTGGAAGTGATGAGGAGAAGTCTCTGTGGACTGGTAGTGAAGGTGATGAAGATGATGATATTCCTACTGAAGCCTACCCAAATGAAAAAAGTGACAAATACATAGATAAGCTGTTTGAATTTGAGGAAACATCGAAGTATCGGACAATCTCAGAATTACTAAAAGCAGAACAAGAACCAGAGGAGCTTTCCCCTGGAAAGCAAGCCAGGAAAATTGCAGTTGAGAATGCATTGAGAAAGTTGAAGAAAGGGCCGGACGGGAGATATGTTAATGTATGGGAAGTCATGAGTGACCTAGATATATTAATAGGAGCATTTGAAAATATAGTTTCAGGACCAGAATATGCAGAGCTGAGACAAGGGGGGCCTAAGAAATTAAATTTGCAGTTCTTCAAGGATATACAAGCGCGCATGAGAGATCCAAATTATAAGTTCTCGCCCGAGTTGAAGCTGAAACCAAAGAGCAAATTAGTTCCGAAAAAGAGATGGCAGAAGACACAGTCTAGGCGGAGGAAAGCACAAAAGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

36.29

Weight (kDa)

7.59

Isoelectric Point (pI)

54.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17460 AT5G17460 AT5G17460 AT5G17460 AT5G17460
fragaria_vesca FvH4_1g30050
malus_domestica MD09G1260700.v1.1 MD09G1260800.v1.1
prunus_persica Prupe.3G152500_v2.0.a1
pyrus_communis pycom09g17520
rosa_chinensis RchiOBHm_Chr3g0492091
rosa_laevigata RLG00000022794
rosa_multiflora Rmu_sc0021983.1_g000002
rosa_roxburghii Rroxscaffold_6G00392540
rosa_rugosa Rorug03G0251900
rosa_samantha Rh3AG302000 Rh3BG337900 Rh3CG335400 Rh3DG337500
rosa_wichuraiana Rw3G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 840
AccII CGCG 1 cut(s) 820
AciI CCGC 1 cut(s) 919
AclWI GGATC 2 cut(s) 325, 824
AcsI RAATTY 2 cut(s) 530, 790
AcuI CTGAAG 1 cut(s) 501
AfeI AGCGCT 1 cut(s) 938
AgsI TTSAA 6 cut(s) 146, 530, 655, 731, 805, 859
AjnI CCWGG 4 cut(s) 208, 233, 604, 617
AloI GAACNNNNNNTCC 1 cut(s) 33
AluBI AGCT 5 cut(s) 149, 523, 598, 763, 862
AluI AGCT 5 cut(s) 149, 523, 598, 763, 862
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 3 cut(s) 47, 438, 760
AlwI GGATC 2 cut(s) 325, 824
Ama87I CYCGRG 1 cut(s) 851
Aor51HI AGCGCT 1 cut(s) 938
AoxI GGCC 2 cut(s) 662, 776
ApoI RAATTY 2 cut(s) 530, 790
AseI ATTAAT 1 cut(s) 716
AspLEI GCGC 3 cut(s) 820, 822, 939
AspS9I GGNCC 3 cut(s) 662, 746, 776
AsuHPI GGTGA 2 cut(s) 224, 467
AvaI CYCGRG 1 cut(s) 851
AvaII GGWCC 1 cut(s) 746
BauI CACGAG 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 911
Bbv12I GWGCWC 1 cut(s) 363
BccI CCATC 1 cut(s) 891
BciT130I CCWGG 4 cut(s) 210, 235, 606, 619
BciVI GTATCC 1 cut(s) 96
BcoDI GTCTC 3 cut(s) 47, 438, 760
BfaI CTAG 2 cut(s) 707, 915
BfoI RGCGCY 1 cut(s) 940
BfuI GTATCC 1 cut(s) 96
Bme1390I CCNGG 4 cut(s) 210, 235, 606, 619
Bme18I GGWCC 1 cut(s) 746
BmeT110I CYCGRG 1 cut(s) 851
BmgT120I GGNCC 3 cut(s) 662, 746, 776
BmiI GGNNCC 1 cut(s) 777
BmrFI CCNGG 4 cut(s) 210, 235, 606, 619
BmsI GCATC 1 cut(s) 367
BoxI GACNNNNGTC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 911
Bsa29I ATCGAT 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 604
BsaXI ACNNNNNCTCC 3 cut(s) 31, 74, 104
Bse1I ACTGG 1 cut(s) 448
BseBI CCWGG 4 cut(s) 210, 235, 606, 619
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 576, 755
BseNI ACTGG 1 cut(s) 448
BsePI GCGCGC 1 cut(s) 818
BseRI GAGGAG 2 cut(s) 440, 608
Bsh1236I CGCG 1 cut(s) 820
BshFI GGCC 2 cut(s) 664, 778
BshVI ATCGAT 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 851
BsiSI CCGG 1 cut(s) 665
BslFI GGGAC 1 cut(s) 38
BsmAI GTCTC 3 cut(s) 47, 438, 760
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 2 cut(s) 664, 778
BsoBI CYCGRG 1 cut(s) 851
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 4 cut(s) 155, 187, 330, 829
BspACI CCGC 1 cut(s) 919
BspANI GGCC 2 cut(s) 664, 778
BspCNI CTCAG 2 cut(s) 575, 756
BspDI ATCGAT 1 cut(s) 375
BspFNI CGCG 1 cut(s) 820
BspHI TCATGA 1 cut(s) 696
BspLI GGNNCC 1 cut(s) 777
BspPI GGATC 2 cut(s) 325, 824
BsrI ACTGG 1 cut(s) 448
BssECI CCNNGG 1 cut(s) 604
BssHII GCGCGC 1 cut(s) 818
BssMI GATC 4 cut(s) 155, 187, 330, 829
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 4 cut(s) 210, 235, 606, 619
Bst4CI ACNGT 1 cut(s) 912
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 3 cut(s) 351, 615, 820
BstDEI CTNAG 3 cut(s) 562, 764, 780
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 820
BstH2I RGCGCY 1 cut(s) 940
BstHHI GCGC 3 cut(s) 820, 822, 939
BstKTI GATC 4 cut(s) 158, 190, 333, 832
BstMAI GTCTC 3 cut(s) 47, 438, 760
BstMBI GATC 4 cut(s) 155, 187, 330, 829
BstNI CCWGG 4 cut(s) 210, 235, 606, 619
BstPAI GACNNNNGTC 1 cut(s) 312
BstSCI CCNGG 4 cut(s) 208, 233, 604, 617
BstUI CGCG 1 cut(s) 820
BstV2I GAAGAC 1 cut(s) 911
BstX2I RGATCY 2 cut(s) 330, 829
BstYI RGATCY 2 cut(s) 330, 829
Bsu15I ATCGAT 1 cut(s) 375
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 2 cut(s) 664, 778
BsuTUI ATCGAT 1 cut(s) 375
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 3 cut(s) 351, 615, 820
CciI TCATGA 1 cut(s) 696
CfoI GCGC 3 cut(s) 820, 822, 939
Cfr13I GGNCC 3 cut(s) 662, 746, 776
ClaI ATCGAT 1 cut(s) 375
CsiI ACCWGGT 1 cut(s) 208
CviAII CATG 3 cut(s) 138, 697, 823
DdeI CTNAG 3 cut(s) 562, 764, 780
DpnI GATC 4 cut(s) 157, 189, 332, 831
DpnII GATC 4 cut(s) 155, 187, 330, 829
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 1 cut(s) 934
Eco47I GGWCC 1 cut(s) 746
Eco47III AGCGCT 1 cut(s) 938
Eco57I CTGAAG 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 851
EcoO109I RGGNCCY 1 cut(s) 776
EcoRII CCWGG 4 cut(s) 208, 233, 604, 617
EcoT22I ATGCAT 1 cut(s) 643
FaeI CATG 3 cut(s) 141, 700, 826
FaqI GGGAC 1 cut(s) 38
FatI CATG 3 cut(s) 137, 696, 822
FauNDI CATATG 1 cut(s) 160
FokI GGATG 1 cut(s) 317
FspBI CTAG 2 cut(s) 707, 915
GlaI GCGC 3 cut(s) 819, 821, 938
HaeII RGCGCY 1 cut(s) 940
HaeIII GGCC 2 cut(s) 664, 778
HapII CCGG 1 cut(s) 665
HhaI GCGC 3 cut(s) 820, 822, 939
Hin1II CATG 3 cut(s) 141, 700, 826
Hin6I GCGC 3 cut(s) 818, 820, 937
HinP1I GCGC 3 cut(s) 818, 820, 937
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 3 cut(s) 67, 95, 313
HpaII CCGG 1 cut(s) 665
HphI GGTGA 2 cut(s) 224, 467
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 7 cut(s) 75, 94, 335, 367, 555, 565, 888
Hpy188III TCNNGA 5 cut(s) 153, 320, 414, 697, 744
Hpy8I GTNNAC 1 cut(s) 441
HpyAV CCTTC 1 cut(s) 446
HpyCH4III ACNGT 1 cut(s) 912
HpyCH4V TGCA 5 cut(s) 48, 629, 641, 758, 796
HpyF3I CTNAG 3 cut(s) 562, 764, 780
Hsp92II CATG 3 cut(s) 141, 700, 826
HspAI GCGC 3 cut(s) 818, 820, 937
Kzo9I GATC 4 cut(s) 155, 187, 330, 829
LmnI GCTCC 3 cut(s) 358, 595, 722
LweI GCATC 1 cut(s) 367
MabI ACCWGGT 1 cut(s) 208
MaeI CTAG 2 cut(s) 707, 915
MaeIII GTNAC 3 cut(s) 212, 503, 701
MalI GATC 4 cut(s) 157, 189, 332, 831
MboI GATC 4 cut(s) 155, 187, 330, 829
MboII GAAGA 9 cut(s) 62, 266, 293, 335, 338, 473, 667, 793, 916
MflI RGATCY 2 cut(s) 330, 829
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 8 cut(s) 34, 530, 566, 624, 785, 790, 835, 878
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 6 cut(s) 3, 32, 418, 529, 586, 915
Mph1103I ATGCAT 1 cut(s) 643
MseI TTAA 7 cut(s) 33, 104, 224, 342, 681, 716, 788
MspI CCGG 1 cut(s) 665
MspR9I CCNGG 4 cut(s) 210, 235, 606, 619
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 4 cut(s) 210, 235, 606, 619
MvnI CGCG 1 cut(s) 820
NdeI CATATG 1 cut(s) 160
NdeII GATC 4 cut(s) 155, 187, 330, 829
NlaIII CATG 3 cut(s) 141, 700, 826
NlaIV GGNNCC 1 cut(s) 777
NmuCI GTSAC 3 cut(s) 212, 503, 701
NsiI ATGCAT 1 cut(s) 643
PagI TCATGA 1 cut(s) 696
PauI GCGCGC 1 cut(s) 818
PctI GAATGC 1 cut(s) 643
PfeI GAWTC 2 cut(s) 67, 95
PflFI GACNNNGTC 1 cut(s) 910
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
PshAI GACNNNNGTC 1 cut(s) 312
PshBI ATTAAT 1 cut(s) 716
PsiI TTATAA 1 cut(s) 840
Psp6I CCWGG 4 cut(s) 208, 233, 604, 617
PspGI CCWGG 4 cut(s) 208, 233, 604, 617
PspN4I GGNNCC 1 cut(s) 777
PspPI GGNCC 3 cut(s) 662, 746, 776
PsuI RGATCY 2 cut(s) 330, 829
PsyI GACNNNGTC 1 cut(s) 910
PteI GCGCGC 1 cut(s) 818
SaqAI TTAA 7 cut(s) 33, 104, 224, 342, 681, 716, 788
Sau3AI GATC 4 cut(s) 155, 187, 330, 829
Sau96I GGNCC 3 cut(s) 662, 746, 776
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 4 cut(s) 210, 235, 606, 619
SduI GDGCHC 1 cut(s) 363
SetI ASST 9 cut(s) 151, 211, 372, 457, 525, 600, 708, 765, 864
SexAI ACCWGGT 1 cut(s) 208
SfaNI GCATC 1 cut(s) 367
SinI GGWCC 1 cut(s) 746
Sse9I AATT 8 cut(s) 34, 530, 566, 624, 785, 790, 835, 878
SsiI CCGC 1 cut(s) 919
SspMI CTAG 2 cut(s) 707, 915
StyD4I CCNGG 4 cut(s) 208, 233, 604, 617
TaaI ACNGT 1 cut(s) 912
TaqI TCGA 2 cut(s) 375, 545
TasI AATT 8 cut(s) 34, 530, 566, 624, 785, 790, 835, 878
TfiI GAWTC 2 cut(s) 67, 95
Tru1I TTAA 7 cut(s) 33, 104, 224, 342, 681, 716, 788
Tru9I TTAA 7 cut(s) 33, 104, 224, 342, 681, 716, 788
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 3 cut(s) 212, 503, 701
Tsp45I GTSAC 3 cut(s) 212, 503, 701
TspDTI ATGAA 2 cut(s) 474, 510
TspGWI ACGGA 2 cut(s) 78, 312
TspRI CASTG 1 cut(s) 283
Tth111I GACNNNGTC 1 cut(s) 910
VpaK11BI GGWCC 1 cut(s) 746
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 2 cut(s) 530, 790
XspI CTAG 2 cut(s) 707, 915
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.