RLG00000022794

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011470
Physical Location & Seq
Forward (+)
12297190 .. 12298925
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022794

Sequence Viewer

Length: 954 bp
ATGGCTCGGAGGCTCCGTTCCTTTATTTCCCTCAATTCTTGTCTTTGCAAAGTCCCAAAACCCCAAATGCAGTCTTCACTGCTTCCAAGATTAGAATACCCATCTGATTCTGCTTTAAGAACTTCAACAGGTCGCTGTGGGTTATCTCCAAGTTTTCAAGCTTCACGATCATATGCTCGTGGTGATCGTAAATATTATGATCTTTTTGGCAATGGAAAACCTGGTGACAAGGATTTCAGGAAAGCCTGGAAGAAAGAAATTAAGGAAGACGATTGTTTATGGACAGGTAGTGAAGATGAGAAAGATGATGGAAAGGATAAAAAGAGTCATCTGGAAGAAGAGATCCAAAAAGTTAAACAGCAGGCAAGGGAGCACTCTGACCTGATCGATGCCGATGATAGTGATGAGTTGAGAAGTGTTTGGTCTGGAAGTGATGAGGAGAAGTCTCTGTGGACTGGTAGTGAAGGTGATGATGATGATGATATTCCTACTGAAGCCTACCCAAATGAAAGTAGTGACAAATACATAGATAAGCTGTTTGAATTTGAGGAAACATCCAAGTATCGGACAATCTCAGAATTATTAAAAGCAGAACAAGAACCAGAGGAGCTTTCCCCTGGAAAGCAAGCCAGGAAAATTGCAGTTGAGAATGCATTGAAAAAGTTGAAGAAAGGGCCAGACGGGAGATATGTGAATGTATGGGAAGTCATGAGTGACCTAGATATTCTAATAGGAGCATTTGAAAATATAGTTTCAGGACCAGAATATGCAGAGCTGAGACAAGGCGGGCCTAAGAAATTAAATATGCAGTTCTTCAAGGATATACAAGCGCGCATGAGAGATCCAAATTATAAGTTCTCGCCGGAGTTGAAGCTGAAACCGAAGAGCAAACTAGTTCCGAAAAAGAAATGGCAGAAGACACAGTCTAGGCGGAGGAAAGCACAGAAGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

36.56

Weight (kDa)

8.6

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17460 AT5G17460 AT5G17460 AT5G17460 AT5G17460
fragaria_vesca FvH4_1g30050
malus_domestica MD09G1260700.v1.1 MD09G1260800.v1.1
prunus_persica Prupe.3G152500_v2.0.a1
pyrus_communis pycom09g17520
rosa_chinensis RchiOBHm_Chr3g0492091
rosa_laevigata RLG00000022794
rosa_multiflora Rmu_sc0021983.1_g000002
rosa_roxburghii Rroxscaffold_6G00392540
rosa_rugosa Rorug03G0251900
rosa_samantha Rh3AG302000 Rh3BG337900 Rh3CG335400 Rh3DG337500
rosa_wichuraiana Rw3G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 852
AccII CGCG 1 cut(s) 832
AciI CCGC 2 cut(s) 786, 931
AclWI GGATC 2 cut(s) 337, 836
AcsI RAATTY 1 cut(s) 542
AcuI CTGAAG 1 cut(s) 513
AfeI AGCGCT 1 cut(s) 950
AfiI CCNNNNNNNGG 1 cut(s) 564
AgsI TTSAA 8 cut(s) 126, 158, 542, 658, 667, 743, 817, 871
AhlI ACTAGT 1 cut(s) 892
AjnI CCWGG 4 cut(s) 220, 245, 616, 629
AloI GAACNNNNNNTCC 1 cut(s) 33
AluBI AGCT 5 cut(s) 161, 535, 610, 775, 874
AluI AGCT 5 cut(s) 161, 535, 610, 775, 874
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 2 cut(s) 450, 772
AlwI GGATC 2 cut(s) 337, 836
Aor51HI AGCGCT 1 cut(s) 950
AoxI GGCC 2 cut(s) 674, 788
ApoI RAATTY 1 cut(s) 542
AspLEI GCGC 3 cut(s) 832, 834, 951
AspS9I GGNCC 3 cut(s) 674, 758, 788
AsuHPI GGTGA 3 cut(s) 194, 236, 479
AvaII GGWCC 1 cut(s) 758
BauI CACGAG 1 cut(s) 177
BbsI GAAGAC 3 cut(s) 66, 273, 923
Bbv12I GWGCWC 1 cut(s) 375
BccI CCATC 2 cut(s) 109, 302
BciT130I CCWGG 4 cut(s) 222, 247, 618, 631
BcoDI GTCTC 2 cut(s) 450, 772
BcuI ACTAGT 1 cut(s) 892
BfaI CTAG 3 cut(s) 719, 893, 927
BfoI RGCGCY 1 cut(s) 952
Bme1390I CCNGG 4 cut(s) 222, 247, 618, 631
Bme18I GGWCC 1 cut(s) 758
BmgT120I GGNCC 3 cut(s) 674, 758, 788
BmiI GGNNCC 1 cut(s) 14
BmrFI CCNGG 4 cut(s) 222, 247, 618, 631
BmsI GCATC 1 cut(s) 379
BpiI GAAGAC 3 cut(s) 66, 273, 923
Bsa29I ATCGAT 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 616
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 564
Bse1I ACTGG 1 cut(s) 460
Bse3DI GCAATG 1 cut(s) 217
BseBI CCWGG 4 cut(s) 222, 247, 618, 631
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 1 cut(s) 554
BseLI CCNNNNNNNGG 1 cut(s) 564
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 2 cut(s) 588, 767
BseNI ACTGG 1 cut(s) 460
BsePI GCGCGC 1 cut(s) 830
BseRI GAGGAG 2 cut(s) 452, 620
Bsh1236I CGCG 1 cut(s) 832
BshFI GGCC 2 cut(s) 676, 790
BshVI ATCGAT 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 1 cut(s) 863
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 564
BsmAI GTCTC 2 cut(s) 450, 772
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 2 cut(s) 676, 790
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 6 cut(s) 167, 184, 199, 342, 384, 841
BspACI CCGC 2 cut(s) 786, 931
BspANI GGCC 2 cut(s) 676, 790
BspCNI CTCAG 2 cut(s) 587, 768
BspDI ATCGAT 1 cut(s) 387
BspFNI CGCG 1 cut(s) 832
BspHI TCATGA 1 cut(s) 708
BspLI GGNNCC 1 cut(s) 14
BspPI GGATC 2 cut(s) 337, 836
BspQI GCTCTTC 1 cut(s) 878
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 1 cut(s) 460
BssECI CCNNGG 1 cut(s) 616
BssHII GCGCGC 1 cut(s) 830
BssMI GATC 6 cut(s) 167, 184, 199, 342, 384, 841
BssSI CACGAG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 177
Bst2UI CCWGG 4 cut(s) 222, 247, 618, 631
Bst4CI ACNGT 1 cut(s) 924
Bst6I CTCTTC 2 cut(s) 333, 878
BstC8I GCNNGC 4 cut(s) 363, 627, 788, 832
BstDEI CTNAG 3 cut(s) 574, 776, 792
BstF5I GGATG 1 cut(s) 554
BstFNI CGCG 1 cut(s) 832
BstH2I RGCGCY 1 cut(s) 952
BstHHI GCGC 3 cut(s) 832, 834, 951
BstKTI GATC 6 cut(s) 170, 187, 202, 345, 387, 844
BstMAI GTCTC 2 cut(s) 450, 772
BstMBI GATC 6 cut(s) 167, 184, 199, 342, 384, 841
BstNI CCWGG 4 cut(s) 222, 247, 618, 631
BstSCI CCNGG 4 cut(s) 220, 245, 616, 629
BstUI CGCG 1 cut(s) 832
BstV2I GAAGAC 3 cut(s) 66, 273, 923
BstX2I RGATCY 2 cut(s) 342, 841
BstYI RGATCY 2 cut(s) 342, 841
Bsu15I ATCGAT 1 cut(s) 387
BsuRI GGCC 2 cut(s) 676, 790
BsuTUI ATCGAT 1 cut(s) 387
BtsCI GGATG 1 cut(s) 554
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 4 cut(s) 363, 627, 788, 832
CciI TCATGA 1 cut(s) 708
CfoI GCGC 3 cut(s) 832, 834, 951
Cfr13I GGNCC 3 cut(s) 674, 758, 788
ClaI ATCGAT 1 cut(s) 387
CsiI ACCWGGT 1 cut(s) 220
CviAII CATG 2 cut(s) 709, 835
DdeI CTNAG 3 cut(s) 574, 776, 792
DpnI GATC 6 cut(s) 169, 186, 201, 344, 386, 843
DpnII GATC 6 cut(s) 167, 184, 199, 342, 384, 841
Eam1104I CTCTTC 2 cut(s) 333, 878
EarI CTCTTC 2 cut(s) 333, 878
EciI GGCGGA 1 cut(s) 946
Eco47I GGWCC 1 cut(s) 758
Eco47III AGCGCT 1 cut(s) 950
Eco57I CTGAAG 1 cut(s) 513
EcoRII CCWGG 4 cut(s) 220, 245, 616, 629
EcoT22I ATGCAT 1 cut(s) 655
FaeI CATG 2 cut(s) 712, 838
FaqI GGGAC 1 cut(s) 38
FatI CATG 2 cut(s) 708, 834
FauI CCCGC 1 cut(s) 779
FauNDI CATATG 1 cut(s) 172
FokI GGATG 1 cut(s) 541
FspBI CTAG 3 cut(s) 719, 893, 927
GlaI GCGC 3 cut(s) 831, 833, 950
HaeII RGCGCY 1 cut(s) 952
HaeIII GGCC 2 cut(s) 676, 790
HapII CCGG 1 cut(s) 863
HhaI GCGC 3 cut(s) 832, 834, 951
Hin1II CATG 2 cut(s) 712, 838
Hin6I GCGC 3 cut(s) 830, 832, 949
HinP1I GCGC 3 cut(s) 830, 832, 949
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 2 cut(s) 107, 325
HpaII CCGG 1 cut(s) 863
HphI GGTGA 3 cut(s) 194, 236, 479
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 6 cut(s) 9, 106, 379, 567, 577, 900
Hpy188III TCNNGA 6 cut(s) 165, 238, 332, 426, 709, 756
Hpy8I GTNNAC 1 cut(s) 453
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 1 cut(s) 924
HpyCH4V TGCA 6 cut(s) 48, 70, 641, 653, 770, 808
HpyF3I CTNAG 3 cut(s) 574, 776, 792
Hsp92II CATG 2 cut(s) 712, 838
HspAI GCGC 3 cut(s) 830, 832, 949
Kzo9I GATC 6 cut(s) 167, 184, 199, 342, 384, 841
LguI GCTCTTC 1 cut(s) 878
LmnI GCTCC 4 cut(s) 18, 370, 607, 734
LweI GCATC 1 cut(s) 379
MabI ACCWGGT 1 cut(s) 220
MaeI CTAG 3 cut(s) 719, 893, 927
MaeIII GTNAC 3 cut(s) 224, 515, 713
MalI GATC 6 cut(s) 169, 186, 201, 344, 386, 843
MboI GATC 6 cut(s) 167, 184, 199, 342, 384, 841
MflI RGATCY 2 cut(s) 342, 841
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 7 cut(s) 34, 258, 542, 578, 636, 797, 847
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 6 cut(s) 3, 41, 430, 541, 598, 927
Mph1103I ATGCAT 1 cut(s) 655
MseI TTAA 5 cut(s) 116, 261, 354, 584, 800
MspI CCGG 1 cut(s) 863
MspR9I CCNGG 4 cut(s) 222, 247, 618, 631
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 4 cut(s) 222, 247, 618, 631
MvnI CGCG 1 cut(s) 832
NdeI CATATG 1 cut(s) 172
NdeII GATC 6 cut(s) 167, 184, 199, 342, 384, 841
NlaIII CATG 2 cut(s) 712, 838
NlaIV GGNNCC 1 cut(s) 14
NmuCI GTSAC 3 cut(s) 224, 515, 713
NsiI ATGCAT 1 cut(s) 655
PagI TCATGA 1 cut(s) 708
PauI GCGCGC 1 cut(s) 830
PciSI GCTCTTC 1 cut(s) 878
PcsI WCGNNNNNNNCGW 2 cut(s) 13, 184
PctI GAATGC 1 cut(s) 655
PfeI GAWTC 1 cut(s) 107
PflFI GACNNNGTC 1 cut(s) 922
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
PsiI TTATAA 1 cut(s) 852
Psp6I CCWGG 4 cut(s) 220, 245, 616, 629
PspGI CCWGG 4 cut(s) 220, 245, 616, 629
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 3 cut(s) 674, 758, 788
PsuI RGATCY 2 cut(s) 342, 841
PsyI GACNNNGTC 1 cut(s) 922
PteI GCGCGC 1 cut(s) 830
SapI GCTCTTC 1 cut(s) 878
SaqAI TTAA 5 cut(s) 116, 261, 354, 584, 800
Sau3AI GATC 6 cut(s) 167, 184, 199, 342, 384, 841
Sau96I GGNCC 3 cut(s) 674, 758, 788
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 4 cut(s) 222, 247, 618, 631
SduI GDGCHC 1 cut(s) 375
SexAI ACCWGGT 1 cut(s) 220
SfaNI GCATC 1 cut(s) 379
SinI GGWCC 1 cut(s) 758
SpeI ACTAGT 1 cut(s) 892
Sse9I AATT 7 cut(s) 34, 258, 542, 578, 636, 797, 847
SsiI CCGC 2 cut(s) 786, 931
SspI AATATT 1 cut(s) 194
SspMI CTAG 3 cut(s) 719, 893, 927
StyD4I CCNGG 4 cut(s) 220, 245, 616, 629
TaaI ACNGT 1 cut(s) 924
TaqI TCGA 1 cut(s) 387
TasI AATT 7 cut(s) 34, 258, 542, 578, 636, 797, 847
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 5 cut(s) 116, 261, 354, 584, 800
Tru9I TTAA 5 cut(s) 116, 261, 354, 584, 800
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 3 cut(s) 224, 515, 713
Tsp45I GTSAC 3 cut(s) 224, 515, 713
TspDTI ATGAA 1 cut(s) 522
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 1 cut(s) 84
Tth111I GACNNNGTC 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 758
XapI RAATTY 1 cut(s) 542
XspI CTAG 3 cut(s) 719, 893, 927
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.