Rroxscaffold_6G00392540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011470
Physical Location & Seq
Forward (+)
12128336 .. 12130460
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392540.1

Sequence Viewer

Length: 957 bp
ATGGCTCGGTGGCTCCGTTCCTTTGTTTCCCTCAATTCTTGTCTTTGCATAGTCCCAAAACCCCAAATGCAGCCTTCACTGCTGCTTCCGAGATTAGAATACCCATCTGATTCTGCTTTAACAACTTCAACAGGTCCCTGTGGGTTATCTCCAACTTTTCAAGCTTCACGATCATATGCTCGTGGTGATCATAGATATTATGATCTTTTTGGCAATGGAAAACCTGGTGACAAGGATTTCAGGAAAGCCTGGAAGACAGAAATTAAGGAAGACGATTGTTTATGGACAGGTAGTGAAGATGAGAAAGATGATGGAAAGGATAAAAAGAGTCATCTGGAAGAAGAGATCCAAAAAGTTAAACAGCAGGTGAGGGAGCACTCTGACCTGATCGATGCCGATGATAGTGATGAGTTGAGAAGTGTTTGGTCTGGAAGTGATGAGGAGAAGTCTCTGTGGACTGGTAGTGAAGGTGATGATGATGATGATATTCCTACTGAAGCCTACCCAAATGAAAGTAGTGACAAATACATAGATAAGCTGTTTGAATTTGAGGAAACATCAAAGTATCGGACAATCTCAGAATTATTAAAAGCAGAACAAGAACCAGAGGAGCTTTCACCTGGAAAGCAAGCCAGGAAAATTGCAGTTGAGAATGCATTGAAAAAGTTGAAGAAAGGGCCAGACGGGAGATATGTTAATGTATGGGAAGTCATGAGTGACCTAGATATTCTAATAGGAGCATTTGAAAATATAGTTTCAGGACCAGAATATGCAGAGCTGAGGCATGGGGGGCCTAAGAAATTAAATATGCAGTTCTTCAAGGATATACAAGCGCGCATGAGAGATCCAAATTATAAGTTTTCGCCTGAGTTGAAGCTGAAACCGAAGAGCAAACTAGTTCCGAAAAAGAAATGGCAGAAGACAGAGTCTAGGCGGAGGAAAGCACAAAAGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

36.61

Weight (kDa)

6.0

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17460 AT5G17460 AT5G17460 AT5G17460 AT5G17460
fragaria_vesca FvH4_1g30050
malus_domestica MD09G1260700.v1.1 MD09G1260800.v1.1
prunus_persica Prupe.3G152500_v2.0.a1
pyrus_communis pycom09g17520
rosa_chinensis RchiOBHm_Chr3g0492091
rosa_laevigata RLG00000022794
rosa_multiflora Rmu_sc0021983.1_g000002
rosa_roxburghii Rroxscaffold_6G00392540
rosa_rugosa Rorug03G0251900
rosa_samantha Rh3AG302000 Rh3BG337900 Rh3CG335400 Rh3DG337500
rosa_wichuraiana Rw3G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 855
AarI CACCTGC 1 cut(s) 355
Acc36I ACCTGC 1 cut(s) 355
AccII CGCG 1 cut(s) 835
AciI CCGC 1 cut(s) 934
AclWI GGATC 2 cut(s) 340, 839
AcsI RAATTY 1 cut(s) 545
AcuI CTGAAG 1 cut(s) 516
AfeI AGCGCT 1 cut(s) 953
AgsI TTSAA 8 cut(s) 129, 161, 545, 661, 670, 746, 820, 874
AhlI ACTAGT 1 cut(s) 895
AjnI CCWGG 4 cut(s) 223, 248, 619, 632
AluBI AGCT 5 cut(s) 164, 538, 613, 778, 877
AluI AGCT 5 cut(s) 164, 538, 613, 778, 877
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 2 cut(s) 340, 839
Aor51HI AGCGCT 1 cut(s) 953
AoxI GGCC 2 cut(s) 677, 791
ApeKI GCWGC 2 cut(s) 70, 82
ApoI RAATTY 1 cut(s) 545
AspLEI GCGC 3 cut(s) 835, 837, 954
AspS9I GGNCC 4 cut(s) 134, 677, 761, 791
AsuHPI GGTGA 5 cut(s) 197, 239, 379, 482, 609
AvaII GGWCC 2 cut(s) 134, 761
BauI CACGAG 1 cut(s) 180
BbsI GAAGAC 3 cut(s) 260, 276, 926
Bbv12I GWGCWC 1 cut(s) 378
BbvCI CCTCAGC 1 cut(s) 779
BbvI GCAGC 2 cut(s) 69, 82
BccI CCATC 2 cut(s) 112, 305
BciT130I CCWGG 4 cut(s) 225, 250, 621, 634
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 453
BcuI ACTAGT 1 cut(s) 895
BfaI CTAG 3 cut(s) 722, 896, 930
BfoI RGCGCY 1 cut(s) 955
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 2 cut(s) 71, 83
BlsI GCNGC 2 cut(s) 72, 84
Bme1390I CCNGG 4 cut(s) 225, 250, 621, 634
Bme18I GGWCC 2 cut(s) 134, 761
BmgT120I GGNCC 4 cut(s) 134, 677, 761, 791
BmiI GGNNCC 3 cut(s) 14, 136, 792
BmrFI CCNGG 4 cut(s) 225, 250, 621, 634
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 3 cut(s) 260, 276, 926
Bpu10I CCTNAGC 1 cut(s) 779
Bsa29I ATCGAT 1 cut(s) 390
Bse1I ACTGG 1 cut(s) 463
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 4 cut(s) 225, 250, 621, 634
BseCI ATCGAT 1 cut(s) 390
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 3 cut(s) 591, 770, 858
BseNI ACTGG 1 cut(s) 463
BsePI GCGCGC 1 cut(s) 833
BseRI GAGGAG 2 cut(s) 455, 623
BseXI GCAGC 2 cut(s) 69, 82
Bsh1236I CGCG 1 cut(s) 835
BshFI GGCC 2 cut(s) 679, 793
BshVI ATCGAT 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 378
BslFI GGGAC 2 cut(s) 38, 120
BsmAI GTCTC 1 cut(s) 453
BsmFI GGGAC 2 cut(s) 38, 120
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 2 cut(s) 679, 793
Bsp1286I GDGCHC 1 cut(s) 378
Bsp143I GATC 6 cut(s) 170, 187, 202, 345, 387, 844
BspACI CCGC 1 cut(s) 934
BspANI GGCC 2 cut(s) 679, 793
BspCNI CTCAG 3 cut(s) 590, 771, 859
BspDI ATCGAT 1 cut(s) 390
BspFNI CGCG 1 cut(s) 835
BspHI TCATGA 1 cut(s) 711
BspLI GGNNCC 3 cut(s) 14, 136, 792
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 2 cut(s) 340, 839
BspQI GCTCTTC 1 cut(s) 881
BsrDI GCAATG 1 cut(s) 220
BsrI ACTGG 1 cut(s) 463
BssHII GCGCGC 1 cut(s) 833
BssMI GATC 6 cut(s) 170, 187, 202, 345, 387, 844
BssSI CACGAG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 180
Bst2UI CCWGG 4 cut(s) 225, 250, 621, 634
Bst6I CTCTTC 2 cut(s) 336, 881
BstC8I GCNNGC 2 cut(s) 630, 835
BstDEI CTNAG 4 cut(s) 577, 779, 795, 867
BstFNI CGCG 1 cut(s) 835
BstH2I RGCGCY 1 cut(s) 955
BstHHI GCGC 3 cut(s) 835, 837, 954
BstKTI GATC 6 cut(s) 173, 190, 205, 348, 390, 847
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 6 cut(s) 170, 187, 202, 345, 387, 844
BstMWI GCNNNNNNNGC 2 cut(s) 79, 790
BstNI CCWGG 4 cut(s) 225, 250, 621, 634
BstSCI CCNGG 4 cut(s) 223, 248, 619, 632
BstUI CGCG 1 cut(s) 835
BstV1I GCAGC 2 cut(s) 69, 82
BstV2I GAAGAC 3 cut(s) 260, 276, 926
BstX2I RGATCY 2 cut(s) 345, 844
BstYI RGATCY 2 cut(s) 345, 844
Bsu15I ATCGAT 1 cut(s) 390
BsuRI GGCC 2 cut(s) 679, 793
BsuTUI ATCGAT 1 cut(s) 390
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 2 cut(s) 630, 835
CciI TCATGA 1 cut(s) 711
CfoI GCGC 3 cut(s) 835, 837, 954
Cfr13I GGNCC 4 cut(s) 134, 677, 761, 791
ClaI ATCGAT 1 cut(s) 390
CsiI ACCWGGT 1 cut(s) 223
CviAII CATG 3 cut(s) 712, 785, 838
DdeI CTNAG 4 cut(s) 577, 779, 795, 867
DpnI GATC 6 cut(s) 172, 189, 204, 347, 389, 846
DpnII GATC 6 cut(s) 170, 187, 202, 345, 387, 844
Eam1104I CTCTTC 2 cut(s) 336, 881
EarI CTCTTC 2 cut(s) 336, 881
EciI GGCGGA 1 cut(s) 949
Eco47I GGWCC 2 cut(s) 134, 761
Eco47III AGCGCT 1 cut(s) 953
Eco57I CTGAAG 1 cut(s) 516
EcoO109I RGGNCCY 2 cut(s) 134, 791
EcoRII CCWGG 4 cut(s) 223, 248, 619, 632
EcoT22I ATGCAT 1 cut(s) 658
FaeI CATG 3 cut(s) 715, 788, 841
FaqI GGGAC 2 cut(s) 38, 120
FatI CATG 3 cut(s) 711, 784, 837
FauNDI CATATG 1 cut(s) 175
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 71, 83
Fsp4HI GCNGC 2 cut(s) 71, 83
FspBI CTAG 3 cut(s) 722, 896, 930
GlaI GCGC 3 cut(s) 834, 836, 953
GluI GCNGC 2 cut(s) 71, 83
HaeII RGCGCY 1 cut(s) 955
HaeIII GGCC 2 cut(s) 679, 793
HhaI GCGC 3 cut(s) 835, 837, 954
Hin1II CATG 3 cut(s) 715, 788, 841
Hin6I GCGC 3 cut(s) 833, 835, 952
HinP1I GCGC 3 cut(s) 833, 835, 952
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 3 cut(s) 110, 328, 926
HphI GGTGA 5 cut(s) 197, 239, 379, 482, 609
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 6 cut(s) 90, 109, 382, 570, 580, 903
Hpy188III TCNNGA 6 cut(s) 168, 241, 335, 429, 712, 759
Hpy8I GTNNAC 1 cut(s) 456
HpyAV CCTTC 2 cut(s) 84, 461
HpyCH4V TGCA 6 cut(s) 48, 70, 644, 656, 773, 811
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 790
HpyF3I CTNAG 4 cut(s) 577, 779, 795, 867
Hsp92II CATG 3 cut(s) 715, 788, 841
HspAI GCGC 3 cut(s) 833, 835, 952
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 6 cut(s) 170, 187, 202, 345, 387, 844
LguI GCTCTTC 1 cut(s) 881
LmnI GCTCC 4 cut(s) 18, 373, 610, 737
Lsp1109I GCAGC 2 cut(s) 69, 82
LweI GCATC 1 cut(s) 382
MabI ACCWGGT 1 cut(s) 223
MaeI CTAG 3 cut(s) 722, 896, 930
MaeIII GTNAC 3 cut(s) 227, 518, 716
MalI GATC 6 cut(s) 172, 189, 204, 347, 389, 846
MboI GATC 6 cut(s) 170, 187, 202, 345, 387, 844
MboII GAAGA 9 cut(s) 265, 281, 308, 350, 353, 682, 808, 898, 931
MflI RGATCY 2 cut(s) 345, 844
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 7 cut(s) 34, 261, 545, 581, 639, 800, 850
MlyI GAGTC 2 cut(s) 337, 935
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 7 cut(s) 41, 363, 433, 544, 601, 774, 930
Mph1103I ATGCAT 1 cut(s) 658
MseI TTAA 6 cut(s) 119, 264, 357, 587, 696, 803
MspR9I CCNGG 4 cut(s) 225, 250, 621, 634
Mva1269I GAATGC 1 cut(s) 658
MvaI CCWGG 4 cut(s) 225, 250, 621, 634
MvnI CGCG 1 cut(s) 835
MwoI GCNNNNNNNGC 2 cut(s) 79, 790
NdeI CATATG 1 cut(s) 175
NdeII GATC 6 cut(s) 170, 187, 202, 345, 387, 844
NlaIII CATG 3 cut(s) 715, 788, 841
NlaIV GGNNCC 3 cut(s) 14, 136, 792
NmuCI GTSAC 3 cut(s) 227, 518, 716
NsiI ATGCAT 1 cut(s) 658
PagI TCATGA 1 cut(s) 711
PaqCI CACCTGC 1 cut(s) 355
PauI GCGCGC 1 cut(s) 833
PciSI GCTCTTC 1 cut(s) 881
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PctI GAATGC 1 cut(s) 658
PfeI GAWTC 1 cut(s) 110
PflFI GACNNNGTC 1 cut(s) 925
PkrI GCNGC 2 cut(s) 72, 84
PleI GAGTC 2 cut(s) 336, 934
PpsI GAGTC 2 cut(s) 336, 934
PpuMI RGGWCCY 1 cut(s) 134
PsiI TTATAA 1 cut(s) 855
Psp5II RGGWCCY 1 cut(s) 134
Psp6I CCWGG 4 cut(s) 223, 248, 619, 632
PspGI CCWGG 4 cut(s) 223, 248, 619, 632
PspN4I GGNNCC 3 cut(s) 14, 136, 792
PspPI GGNCC 4 cut(s) 134, 677, 761, 791
PspPPI RGGWCCY 1 cut(s) 134
PsuI RGATCY 2 cut(s) 345, 844
PsyI GACNNNGTC 1 cut(s) 925
PteI GCGCGC 1 cut(s) 833
SapI GCTCTTC 1 cut(s) 881
SaqAI TTAA 6 cut(s) 119, 264, 357, 587, 696, 803
SatI GCNGC 2 cut(s) 71, 83
Sau3AI GATC 6 cut(s) 170, 187, 202, 345, 387, 844
Sau96I GGNCC 4 cut(s) 134, 677, 761, 791
SchI GAGTC 2 cut(s) 337, 935
ScrFI CCNGG 4 cut(s) 225, 250, 621, 634
SduI GDGCHC 1 cut(s) 378
SexAI ACCWGGT 1 cut(s) 223
SfaNI GCATC 1 cut(s) 382
SinI GGWCC 2 cut(s) 134, 761
SpeI ACTAGT 1 cut(s) 895
Sse9I AATT 7 cut(s) 34, 261, 545, 581, 639, 800, 850
SsiI CCGC 1 cut(s) 934
SspMI CTAG 3 cut(s) 722, 896, 930
StyD4I CCNGG 4 cut(s) 223, 248, 619, 632
TaqI TCGA 1 cut(s) 390
TasI AATT 7 cut(s) 34, 261, 545, 581, 639, 800, 850
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 6 cut(s) 119, 264, 357, 587, 696, 803
Tru9I TTAA 6 cut(s) 119, 264, 357, 587, 696, 803
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 3 cut(s) 227, 518, 716
TseI GCWGC 2 cut(s) 70, 82
Tsp45I GTSAC 3 cut(s) 227, 518, 716
TspDTI ATGAA 1 cut(s) 525
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 1 cut(s) 84
Tth111I GACNNNGTC 1 cut(s) 925
VpaK11BI GGWCC 2 cut(s) 134, 761
XapI RAATTY 1 cut(s) 545
XspI CTAG 3 cut(s) 722, 896, 930
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.