Prupe.3G152500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011470
Physical Location & Seq
Reverse (-)
16632098 .. 16635795
3698 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G152500.1

Sequence Viewer

Length: 960 bp
ATGGCTTGGAGGCTCTGTTCCCGCCGTTCCCTCCTTTCTTCTATTTGTCAAGTCCCAAACCTCCGACTGCAGCTTTCACTTCCTCCAAGATTCGAAGCTCTGTATGATTCTGCTCTGAGCACTTCAACAAGTCAAATTAGCTGTGGGTTTTGCCCAAAATTTCAAGCTTCACGATCATATGCCCGTGGTGGGCATAAACCTTATGATCTCTTTGGAAATGGACAACCTGGTGATAAGGACTTTAGGAAAGCCTGGAAGAAAGAGATTGATGAAGATGCTTCTTTATGGACAGGAAGTGAAGAAGAAAGTGACAATGAAAAGGATGAAAAGAGTCATCTGGAAAAAGAGATTCGAAAAGTAAGACAGCAGGCAAGGGAGCACTCTAACCTGATTGATGCTGATGACAGTGATGAGCTGAGAAGTGTTTGGTCTGGAAGTGATGAGGAGAAGTCTCTGTGGACTGGTAGTGAAGGTGATGACGACGACGATATTCCTACTGAACCCTACCCAAATGAAAGCAGTGATAAACATATAGATAAACTATTTGAGTTTGAGGAAACATCAAAGTATCGGACAATCTCAGAATTATTGAAAGCTGAGCAGGAACCGGAAGAATTGTCCCCCGGAAAGCAAGCTAGGAAAATTGCAGTTGAGAATGCCTTGAAAAAGTTGAAGAAAGGGCCAGATGGTCGATACATTAACGTATGGGAGGTCATGAGTGACTTAGATATTCTAATAGGAGCATTTGAAAATATAGTTTCAGGACCAGAATATGCAGAGCTTAGACAGGGAGGGCCTAAGAAATTAAATATTCAGTTTTTCAAGGATATACAAGCCCGTATGAGAGATCCAAATTATAAGTTCTCACCTGAGTTAAAGTTGAAACCAAAGAGCAAACTAGTTCGTAGAAAGAAATGGCAGAAGACACAATCTAGGCGGAGGAAAGCACAAAAGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

36.82

Weight (kDa)

8.16

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17460 AT5G17460 AT5G17460 AT5G17460 AT5G17460
fragaria_vesca FvH4_1g30050
malus_domestica MD09G1260700.v1.1 MD09G1260800.v1.1
prunus_persica Prupe.3G152500_v2.0.a1
pyrus_communis pycom09g17520
rosa_chinensis RchiOBHm_Chr3g0492091
rosa_laevigata RLG00000022794
rosa_multiflora Rmu_sc0021983.1_g000002
rosa_roxburghii Rroxscaffold_6G00392540
rosa_rugosa Rorug03G0251900
rosa_samantha Rh3AG302000 Rh3BG337900 Rh3CG335400 Rh3DG337500
rosa_wichuraiana Rw3G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 858
AciI CCGC 2 cut(s) 22, 937
AclWI GGATC 1 cut(s) 842
AcsI RAATTY 1 cut(s) 158
AfeI AGCGCT 1 cut(s) 956
AfiI CCNNNNNNNGG 1 cut(s) 189
AgsI TTSAA 8 cut(s) 126, 164, 592, 664, 673, 749, 823, 883
AhlI ACTAGT 1 cut(s) 898
AjnI CCWGG 2 cut(s) 226, 251
AloI GAACNNNNNNTCC 1 cut(s) 33
AluBI AGCT 8 cut(s) 73, 98, 141, 167, 415, 596, 635, 781
AluI AGCT 8 cut(s) 73, 98, 141, 167, 415, 596, 635, 781
Alw21I GWGCWC 2 cut(s) 122, 381
Alw26I GTCTC 1 cut(s) 456
AlwI GGATC 1 cut(s) 842
Aor51HI AGCGCT 1 cut(s) 956
AoxI GGCC 2 cut(s) 680, 794
ApeKI GCWGC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 158
AspLEI GCGC 1 cut(s) 957
AspS9I GGNCC 3 cut(s) 680, 764, 794
AsuC2I CCSGG 1 cut(s) 624
AsuHPI GGTGA 3 cut(s) 242, 485, 858
AsuII TTCGAA 2 cut(s) 93, 352
AvaII GGWCC 1 cut(s) 764
BbsI GAAGAC 1 cut(s) 929
Bbv12I GWGCWC 2 cut(s) 122, 381
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 680
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 2 cut(s) 228, 253
BcnI CCSGG 1 cut(s) 624
BcoDI GTCTC 1 cut(s) 456
BcuI ACTAGT 1 cut(s) 898
BfaI CTAG 4 cut(s) 636, 899, 933, 958
BfmI CTRYAG 1 cut(s) 68
BfoI RGCGCY 1 cut(s) 958
BisI GCNGC 1 cut(s) 71
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 3 cut(s) 228, 253, 624
Bme18I GGWCC 1 cut(s) 764
BmgT120I GGNCC 3 cut(s) 680, 764, 794
BmiI GGNNCC 1 cut(s) 606
BmrFI CCNGG 3 cut(s) 228, 253, 624
BmsI GCATC 2 cut(s) 265, 385
BpiI GAAGAC 1 cut(s) 929
Bpu1102I GCTNAGC 1 cut(s) 597
Bpu14I TTCGAA 2 cut(s) 93, 352
BpuMI CCSGG 1 cut(s) 624
BsaJI CCNNGG 2 cut(s) 184, 622
BsaWI WCCGGW 1 cut(s) 607
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 466
BseBI CCWGG 2 cut(s) 228, 253
BseDI CCNNGG 2 cut(s) 184, 622
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMII CTCAG 5 cut(s) 107, 407, 588, 594, 861
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 2 cut(s) 682, 796
BsiHKAI GWGCWC 2 cut(s) 122, 381
BsiSI CCGG 2 cut(s) 608, 624
BslFI GGGAC 2 cut(s) 38, 604
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 456
BsmFI GGGAC 2 cut(s) 38, 604
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 2 cut(s) 682, 796
Bsp119I TTCGAA 2 cut(s) 93, 352
Bsp1286I GDGCHC 2 cut(s) 122, 381
Bsp143I GATC 3 cut(s) 173, 205, 847
Bsp1720I GCTNAGC 1 cut(s) 597
BspACI CCGC 2 cut(s) 22, 937
BspANI GGCC 2 cut(s) 682, 796
BspCNI CTCAG 5 cut(s) 108, 408, 589, 593, 862
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 1 cut(s) 606
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 1 cut(s) 842
BspT104I TTCGAA 2 cut(s) 93, 352
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 184, 622
BssMI GATC 3 cut(s) 173, 205, 847
Bst2UI CCWGG 2 cut(s) 228, 253
Bst4CI ACNGT 1 cut(s) 407
BstBI TTCGAA 2 cut(s) 93, 352
BstC8I GCNNGC 2 cut(s) 369, 633
BstDEI CTNAG 8 cut(s) 116, 416, 580, 597, 724, 782, 798, 870
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 1 cut(s) 328
BstH2I RGCGCY 1 cut(s) 958
BstHHI GCGC 1 cut(s) 957
BstKTI GATC 3 cut(s) 176, 208, 850
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 3 cut(s) 173, 205, 847
BstNI CCWGG 2 cut(s) 228, 253
BstSCI CCNGG 3 cut(s) 226, 251, 622
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 929
BstX2I RGATCY 1 cut(s) 847
BstYI RGATCY 1 cut(s) 847
BsuRI GGCC 2 cut(s) 682, 796
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 1 cut(s) 328
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 2 cut(s) 412, 526
Cac8I GCNNGC 2 cut(s) 369, 633
CciI TCATGA 1 cut(s) 714
CfoI GCGC 1 cut(s) 957
Cfr13I GGNCC 3 cut(s) 680, 764, 794
CsiI ACCWGGT 1 cut(s) 226
CviAII CATG 1 cut(s) 715
DdeI CTNAG 8 cut(s) 116, 416, 580, 597, 724, 782, 798, 870
DpnI GATC 3 cut(s) 175, 207, 849
DpnII GATC 3 cut(s) 173, 205, 847
EciI GGCGGA 1 cut(s) 952
Eco47I GGWCC 1 cut(s) 764
Eco47III AGCGCT 1 cut(s) 956
EcoO109I RGGNCCY 1 cut(s) 794
EcoRII CCWGG 2 cut(s) 226, 251
FaeI CATG 1 cut(s) 718
FaqI GGGAC 2 cut(s) 38, 604
FatI CATG 1 cut(s) 714
FauI CCCGC 1 cut(s) 29
FauNDI CATATG 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 4 cut(s) 636, 899, 933, 958
GlaI GCGC 1 cut(s) 956
GluI GCNGC 1 cut(s) 71
HaeII RGCGCY 1 cut(s) 958
HaeIII GGCC 2 cut(s) 682, 796
HapII CCGG 2 cut(s) 608, 624
HhaI GCGC 1 cut(s) 957
Hin1II CATG 1 cut(s) 718
Hin6I GCGC 1 cut(s) 955
HinP1I GCGC 1 cut(s) 955
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 4 cut(s) 90, 107, 331, 349
HpaII CCGG 2 cut(s) 608, 624
HphI GGTGA 3 cut(s) 242, 485, 858
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 4 cut(s) 65, 117, 573, 583
Hpy188III TCNNGA 5 cut(s) 171, 338, 432, 715, 762
Hpy8I GTNNAC 1 cut(s) 459
Hpy99I CGWCG 2 cut(s) 485, 488
HpyAV CCTTC 1 cut(s) 464
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 3 cut(s) 70, 647, 776
HpyF3I CTNAG 8 cut(s) 116, 416, 580, 597, 724, 782, 798, 870
HpySE526I ACGT 1 cut(s) 702
Hsp92II CATG 1 cut(s) 718
HspAI GCGC 1 cut(s) 955
Kzo9I GATC 3 cut(s) 173, 205, 847
LmnI GCTCC 2 cut(s) 376, 740
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 2 cut(s) 265, 385
MabI ACCWGGT 1 cut(s) 226
MaeI CTAG 4 cut(s) 636, 899, 933, 958
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 2 cut(s) 308, 719
MalI GATC 3 cut(s) 175, 207, 849
MboI GATC 3 cut(s) 173, 205, 847
MboII GAAGA 8 cut(s) 30, 268, 284, 311, 314, 623, 685, 934
MflI RGATCY 1 cut(s) 847
MhlI GDGCHC 2 cut(s) 122, 381
MluCI AATT 7 cut(s) 135, 158, 584, 614, 642, 803, 853
MlyI GAGTC 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 9 cut(s) 3, 41, 71, 93, 436, 547, 703, 785, 933
MseI TTAA 3 cut(s) 699, 806, 875
MspI CCGG 2 cut(s) 608, 624
MspR9I CCNGG 3 cut(s) 228, 253, 624
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 2 cut(s) 228, 253
NciI CCSGG 1 cut(s) 624
NdeI CATATG 1 cut(s) 178
NdeII GATC 3 cut(s) 173, 205, 847
NlaIII CATG 1 cut(s) 718
NlaIV GGNNCC 1 cut(s) 606
NmuCI GTSAC 2 cut(s) 308, 719
NspV TTCGAA 2 cut(s) 93, 352
PagI TCATGA 1 cut(s) 714
PctI GAATGC 1 cut(s) 661
PfeI GAWTC 3 cut(s) 90, 107, 349
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
PsiI TTATAA 1 cut(s) 858
Psp6I CCWGG 2 cut(s) 226, 251
PspGI CCWGG 2 cut(s) 226, 251
PspN4I GGNNCC 1 cut(s) 606
PspPI GGNCC 3 cut(s) 680, 764, 794
PstI CTGCAG 1 cut(s) 72
PsuI RGATCY 1 cut(s) 847
SaqAI TTAA 3 cut(s) 699, 806, 875
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 3 cut(s) 173, 205, 847
Sau96I GGNCC 3 cut(s) 680, 764, 794
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 3 cut(s) 228, 253, 624
SduI GDGCHC 2 cut(s) 122, 381
SexAI ACCWGGT 1 cut(s) 226
SfaNI GCATC 2 cut(s) 265, 385
SfcI CTRYAG 1 cut(s) 68
SfuI TTCGAA 2 cut(s) 93, 352
SinI GGWCC 1 cut(s) 764
SpeI ACTAGT 1 cut(s) 898
Sse9I AATT 7 cut(s) 135, 158, 584, 614, 642, 803, 853
SsiI CCGC 2 cut(s) 22, 937
SspI AATATT 1 cut(s) 811
SspMI CTAG 4 cut(s) 636, 899, 933, 958
StyD4I CCNGG 3 cut(s) 226, 251, 622
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 1 cut(s) 705
TaqI TCGA 3 cut(s) 93, 352, 691
TasI AATT 7 cut(s) 135, 158, 584, 614, 642, 803, 853
TfiI GAWTC 3 cut(s) 90, 107, 349
Tru1I TTAA 3 cut(s) 699, 806, 875
Tru9I TTAA 3 cut(s) 699, 806, 875
TscAI CASTG 2 cut(s) 412, 526
TseFI GTSAC 2 cut(s) 308, 719
TseI GCWGC 1 cut(s) 70
Tsp45I GTSAC 2 cut(s) 308, 719
TspDTI ATGAA 4 cut(s) 285, 330, 339, 528
TspRI CASTG 2 cut(s) 412, 526
VpaK11BI GGWCC 1 cut(s) 764
XapI RAATTY 1 cut(s) 158
XspI CTAG 4 cut(s) 636, 899, 933, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.