MD09G1260700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0011470
Physical Location & Seq
Reverse (-)
33350030 .. 33353367
3338 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1260700.v1.1.491

Sequence Viewer

Length: 1233 bp
ATGAATTCGTCGCTGGTGTTTCGTCGCTTCTGGTGCTTCAGTGCCGCAACTTCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTACTTTATGCTTCGCTTCCAACAAGAAGCCCCTCGTCTTCTTAGGCTTTCCTCAGGTGTTAGCAACTGTTCTGGATGCCCTTCTCAATGCATCCACTGCCGCAGACTCACTCTTTGAGATTGCAGCTATTGTTACTCAGCCCCCATCCAGAAAGTCTAGGGGGAAAAAGTTGATGCCTTCTCCTTTAGCACAGCATGCTCTTGACAGAGGCTTCCCTTCAAACCTTATTTTCACACCTGAACGGGCTGGAGAGGATGTGTTTTTGTCCGACTTAAGAGCTTTGCAGCCACAACTTCGCATCACTGCTGCTTATGGGAACATTTTACCTACCAAGTTTCTCAATATCCCAACATTGGCGTCACGATCATATGCTCGTGGTGGTCATAAACCTTATGATCTCTTTGGAAATGGAAAACCTGGTGACAAGGAATTCAGGGAAGCCTGGAAGAAAGAGATTGATGAAGATGATACTTTATGGACAGGTAGTGAAGACGAAAGTGACAATGAAAAGGATGAAAAGAGTCGTCTTGAAAAAGAGATTCGAAAAGTAAGACAACAGGCGAGGGAGCACTCTGACCTAATTGATGCCGATGATAGTGATGAGTTGAGAAGTGTTTGGTCTGGAAGCGACGAGGAGAAGTCTCTGTGGACTGGGAGTGAAGATGATGATGACGACGATATTCCTATTGAAGCCTACCCAAATGAAAGTAGTGATAAACATATAGACAAACTATTTGAGTTTGAAGAAACATCAAAGTATCGGACAATTTCTGAATTATTGAAAGCTGAGCAGGAACCAGAGGAGTTGTCCCCTGGAAAGCAAGCTAGGAAAATTGCAGTTGAGAATGCCTTGAAAAAGTTGAAGAAAGGGCCAGACGGGCGTTATATTAACGTGTGGGAGGTCATGAGTGACTTGGATATTTTGGTAGGAGCATTTGAAAATATAGTATCAGGGCCGGAATATGCAGAGCTTAGACAGGGAGGGCCTAAGAAACTGAATATGCAGTTTTTCAAGGATATACAAACGCGTATGAGAGATCCTAATTATAAGTTCTCACCTGAGTTGAAGTTGAAACCAAAGAGCAAACTAGTTGCTAGAAAGAAATGGCAAAAAGTACAATCTAGACGGAGGAAAGCACAAAAGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
No domains found.

Protein Analysis

411

Amino Acids

46.43

Weight (kDa)

6.95

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 43 - 145 1.1e-06 Formyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17460 AT5G17460 AT5G17460 AT5G17460 AT5G17460
fragaria_vesca FvH4_1g30050
malus_domestica MD09G1260700.v1.1 MD09G1260800.v1.1
prunus_persica Prupe.3G152500_v2.0.a1
pyrus_communis pycom09g17520
rosa_chinensis RchiOBHm_Chr3g0492091
rosa_laevigata RLG00000022794
rosa_multiflora Rmu_sc0021983.1_g000002
rosa_roxburghii Rroxscaffold_6G00392540
rosa_rugosa Rorug03G0251900
rosa_samantha Rh3AG302000 Rh3BG337900 Rh3CG335400 Rh3DG337500
rosa_wichuraiana Rw3G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1131
AccII CGCG 1 cut(s) 1111
AciI CCGC 2 cut(s) 45, 183
AclWI GGATC 1 cut(s) 1115
AcsI RAATTY 2 cut(s) 4, 512
AcuI CTGAAG 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 440
AfaI GTAC 1 cut(s) 1200
AfeI AGCGCT 1 cut(s) 1229
AfiI CCNNNNNNNGG 1 cut(s) 436
AflII CTTAAG 1 cut(s) 355
AflIII ACRYGT 2 cut(s) 975, 1109
AhlI ACTAGT 1 cut(s) 1171
AjnI CCWGG 3 cut(s) 499, 524, 895
AluBI AGCT 5 cut(s) 209, 362, 869, 908, 1054
AluI AGCT 5 cut(s) 209, 362, 869, 908, 1054
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 1 cut(s) 729
AlwI GGATC 1 cut(s) 1115
Aor51HI AGCGCT 1 cut(s) 1229
AoxI GGCC 3 cut(s) 953, 1037, 1067
ApeKI GCWGC 3 cut(s) 206, 367, 389
ApoI RAATTY 2 cut(s) 4, 512
ArsI GACNNNNNNTTYG 4 cut(s) 179, 211, 800, 832
AspLEI GCGC 1 cut(s) 1230
AspS9I GGNCC 3 cut(s) 953, 1037, 1067
AsuHPI GGTGA 2 cut(s) 515, 1131
AsuII TTCGAA 1 cut(s) 625
AxyI CCTNAGG 1 cut(s) 135
BauI CACGAG 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 112, 579
Bbv12I GWGCWC 1 cut(s) 654
BbvI GCAGC 3 cut(s) 218, 376, 379
BccI CCATC 1 cut(s) 235
BciT130I CCWGG 3 cut(s) 501, 526, 897
BcoDI GTCTC 1 cut(s) 729
BcuI ACTAGT 1 cut(s) 1171
BfaI CTAG 5 cut(s) 240, 909, 1172, 1179, 1206
BfoI RGCGCY 1 cut(s) 1231
BfrI CTTAAG 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 961
BisI GCNGC 5 cut(s) 45, 183, 207, 368, 390
BlpI GCTNAGC 1 cut(s) 870
BlsI GCNGC 5 cut(s) 46, 184, 208, 369, 391
Bme1390I CCNGG 3 cut(s) 501, 526, 897
BmgT120I GGNCC 3 cut(s) 953, 1037, 1067
BmiI GGNNCC 1 cut(s) 879
BmrFI CCNGG 3 cut(s) 501, 526, 897
BmrI ACTGGG 1 cut(s) 744
BmsI GCATC 5 cut(s) 148, 182, 246, 390, 658
BmuI ACTGGG 1 cut(s) 744
BpiI GAAGAC 2 cut(s) 112, 579
BpmI CTGGAG 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 870
Bpu14I TTCGAA 1 cut(s) 625
BsaHI GRCGYC 1 cut(s) 440
BsaJI CCNNGG 1 cut(s) 895
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 739
Bse21I CCTNAGG 1 cut(s) 135
BseBI CCWGG 3 cut(s) 501, 526, 897
BseDI CCNNGG 1 cut(s) 895
BseGI GGATG 5 cut(s) 163, 173, 227, 343, 601
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMII CTCAG 4 cut(s) 149, 233, 861, 1134
BseNI ACTGG 1 cut(s) 739
BseRI GAGGAG 2 cut(s) 731, 899
BseXI GCAGC 3 cut(s) 218, 376, 379
Bsh1236I CGCG 1 cut(s) 1111
BshFI GGCC 3 cut(s) 955, 1039, 1069
BsiHKAI GWGCWC 1 cut(s) 654
BsiSI CCGG 1 cut(s) 1040
BslFI GGGAC 1 cut(s) 877
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 1 cut(s) 729
BsmFI GGGAC 1 cut(s) 877
BsmI GAATGC 1 cut(s) 934
BsnI GGCC 3 cut(s) 955, 1039, 1069
Bsp119I TTCGAA 1 cut(s) 625
Bsp1286I GDGCHC 1 cut(s) 654
Bsp143I GATC 3 cut(s) 446, 478, 1120
Bsp1720I GCTNAGC 1 cut(s) 870
BspACI CCGC 2 cut(s) 45, 183
BspANI GGCC 3 cut(s) 955, 1039, 1069
BspCNI CTCAG 4 cut(s) 148, 232, 862, 1135
BspFNI CGCG 1 cut(s) 1111
BspHI TCATGA 1 cut(s) 987
BspLI GGNNCC 1 cut(s) 879
BspPI GGATC 1 cut(s) 1115
BspT104I TTCGAA 1 cut(s) 625
BspTI CTTAAG 1 cut(s) 355
BsrI ACTGG 1 cut(s) 739
BssECI CCNNGG 1 cut(s) 895
BssMI GATC 3 cut(s) 446, 478, 1120
BssNI GRCGYC 1 cut(s) 440
BssSI CACGAG 1 cut(s) 456
Bst2BI CACGAG 1 cut(s) 456
Bst2UI CCWGG 3 cut(s) 501, 526, 897
Bst4CI ACNGT 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 440
BstAFI CTTAAG 1 cut(s) 355
BstAPI GCANNNNNTGC 2 cut(s) 179, 278
BstBI TTCGAA 1 cut(s) 625
BstC8I GCNNGC 2 cut(s) 279, 906
BstDEI CTNAG 7 cut(s) 124, 135, 219, 870, 1055, 1071, 1143
BstF5I GGATG 5 cut(s) 163, 173, 227, 343, 601
BstFNI CGCG 1 cut(s) 1111
BstH2I RGCGCY 1 cut(s) 1231
BstHHI GCGC 1 cut(s) 1230
BstKTI GATC 3 cut(s) 449, 481, 1123
BstMAI GTCTC 1 cut(s) 729
BstMBI GATC 3 cut(s) 446, 478, 1120
BstMWI GCNNNNNNNGC 4 cut(s) 33, 179, 278, 961
BstNI CCWGG 3 cut(s) 501, 526, 897
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 3 cut(s) 499, 524, 895
BstUI CGCG 1 cut(s) 1111
BstV1I GCAGC 3 cut(s) 218, 376, 379
BstV2I GAAGAC 2 cut(s) 112, 579
BstX2I RGATCY 1 cut(s) 1120
BstYI RGATCY 1 cut(s) 1120
Bsu36I CCTNAGG 1 cut(s) 135
BsuRI GGCC 3 cut(s) 955, 1039, 1069
BtsCI GGATG 5 cut(s) 163, 173, 227, 343, 601
BtsI GCAGTG 2 cut(s) 177, 384
BtsIMutI CAGTG 3 cut(s) 46, 177, 384
Cac8I GCNNGC 2 cut(s) 279, 906
CciI TCATGA 1 cut(s) 987
CfoI GCGC 1 cut(s) 1230
Cfr13I GGNCC 3 cut(s) 953, 1037, 1067
CseI GACGC 1 cut(s) 429
CsiI ACCWGGT 1 cut(s) 499
Csp6I GTAC 1 cut(s) 1199
CviAII CATG 2 cut(s) 278, 988
CviQI GTAC 1 cut(s) 1199
DdeI CTNAG 7 cut(s) 124, 135, 219, 870, 1055, 1071, 1143
DpnI GATC 3 cut(s) 448, 480, 1122
DpnII GATC 3 cut(s) 446, 478, 1120
Eco47III AGCGCT 1 cut(s) 1229
Eco57I CTGAAG 1 cut(s) 22
Eco81I CCTNAGG 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 1067
EcoRI GAATTC 2 cut(s) 4, 512
EcoRII CCWGG 3 cut(s) 499, 524, 895
EcoT22I ATGCAT 1 cut(s) 175
FaeI CATG 2 cut(s) 281, 991
FaqI GGGAC 1 cut(s) 877
FatI CATG 2 cut(s) 277, 987
FauNDI CATATG 1 cut(s) 451
Fnu4HI GCNGC 5 cut(s) 45, 183, 207, 368, 390
FokI GGATG 5 cut(s) 160, 170, 214, 350, 608
Fsp4HI GCNGC 5 cut(s) 45, 183, 207, 368, 390
FspBI CTAG 5 cut(s) 240, 909, 1172, 1179, 1206
GlaI GCGC 1 cut(s) 1229
GluI GCNGC 5 cut(s) 45, 183, 207, 368, 390
GsuI CTGGAG 1 cut(s) 351
HaeII RGCGCY 1 cut(s) 1231
HaeIII GGCC 3 cut(s) 955, 1039, 1069
HapII CCGG 1 cut(s) 1040
HgaI GACGC 1 cut(s) 429
HhaI GCGC 1 cut(s) 1230
Hin1I GRCGYC 1 cut(s) 440
Hin1II CATG 2 cut(s) 281, 991
Hin6I GCGC 1 cut(s) 1228
HinP1I GCGC 1 cut(s) 1228
HinfI GANTC 3 cut(s) 188, 604, 622
HpaII CCGG 1 cut(s) 1040
HphI GGTGA 2 cut(s) 515, 1131
Hpy166II GTNNAC 1 cut(s) 732
Hpy188I TCNGA 4 cut(s) 352, 658, 846, 856
Hpy188III TCNNGA 8 cut(s) 155, 231, 284, 444, 611, 705, 988, 1206
Hpy8I GTNNAC 1 cut(s) 732
Hpy99I CGWCG 4 cut(s) 13, 27, 716, 761
HpyAV CCTTC 3 cut(s) 173, 270, 309
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 975
HpyCH4V TGCA 6 cut(s) 173, 206, 367, 920, 1049, 1087
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 179, 278, 961
HpyF3I CTNAG 7 cut(s) 124, 135, 219, 870, 1055, 1071, 1143
HpySE526I ACGT 1 cut(s) 975
Hsp92I GRCGYC 1 cut(s) 440
Hsp92II CATG 2 cut(s) 281, 991
HspAI GCGC 1 cut(s) 1228
Kzo9I GATC 3 cut(s) 446, 478, 1120
LmnI GCTCC 2 cut(s) 649, 1013
Lsp1109I GCAGC 3 cut(s) 218, 376, 379
LweI GCATC 5 cut(s) 148, 182, 246, 390, 658
MabI ACCWGGT 1 cut(s) 499
MaeI CTAG 5 cut(s) 240, 909, 1172, 1179, 1206
MaeII ACGT 1 cut(s) 975
MaeIII GTNAC 5 cut(s) 214, 441, 503, 581, 992
MalI GATC 3 cut(s) 448, 480, 1122
MboI GATC 3 cut(s) 446, 478, 1120
MflI RGATCY 1 cut(s) 1120
MhlI GDGCHC 1 cut(s) 654
MluCI AATT 7 cut(s) 4, 512, 663, 849, 857, 915, 1126
MluI ACGCGT 1 cut(s) 1109
MlyI GAGTC 2 cut(s) 182, 613
MmeI TCCRAC 2 cut(s) 126, 375
Mph1103I ATGCAT 1 cut(s) 175
MseI TTAA 2 cut(s) 356, 972
MspCI CTTAAG 1 cut(s) 355
MspI CCGG 1 cut(s) 1040
MspR9I CCNGG 3 cut(s) 501, 526, 897
Mva1269I GAATGC 1 cut(s) 934
MvaI CCWGG 3 cut(s) 501, 526, 897
MvnI CGCG 1 cut(s) 1111
MwoI GCNNNNNNNGC 4 cut(s) 33, 179, 278, 961
NdeI CATATG 1 cut(s) 451
NdeII GATC 3 cut(s) 446, 478, 1120
NlaIII CATG 2 cut(s) 281, 991
NlaIV GGNNCC 1 cut(s) 879
NmuCI GTSAC 4 cut(s) 441, 503, 581, 992
NsiI ATGCAT 1 cut(s) 175
NspI RCATGY 1 cut(s) 281
NspV TTCGAA 1 cut(s) 625
PaeI GCATGC 1 cut(s) 281
PagI TCATGA 1 cut(s) 987
PctI GAATGC 1 cut(s) 934
PfeI GAWTC 1 cut(s) 622
PkrI GCNGC 5 cut(s) 46, 184, 208, 369, 391
PleI GAGTC 2 cut(s) 182, 612
PpsI GAGTC 2 cut(s) 182, 612
PsiI TTATAA 1 cut(s) 1131
Psp6I CCWGG 3 cut(s) 499, 524, 895
PspGI CCWGG 3 cut(s) 499, 524, 895
PspN4I GGNNCC 1 cut(s) 879
PspPI GGNCC 3 cut(s) 953, 1037, 1067
PsuI RGATCY 1 cut(s) 1120
RsaI GTAC 1 cut(s) 1200
RsaNI GTAC 1 cut(s) 1199
SaqAI TTAA 2 cut(s) 356, 972
SatI GCNGC 5 cut(s) 45, 183, 207, 368, 390
Sau3AI GATC 3 cut(s) 446, 478, 1120
Sau96I GGNCC 3 cut(s) 953, 1037, 1067
SchI GAGTC 2 cut(s) 182, 613
ScrFI CCNGG 3 cut(s) 501, 526, 897
SduI GDGCHC 1 cut(s) 654
SexAI ACCWGGT 1 cut(s) 499
SfaNI GCATC 5 cut(s) 148, 182, 246, 390, 658
SfuI TTCGAA 1 cut(s) 625
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
SpeI ACTAGT 1 cut(s) 1171
SphI GCATGC 1 cut(s) 281
Sse9I AATT 7 cut(s) 4, 512, 663, 849, 857, 915, 1126
SsiI CCGC 2 cut(s) 45, 183
SspMI CTAG 5 cut(s) 240, 909, 1172, 1179, 1206
StyD4I CCNGG 3 cut(s) 499, 524, 895
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 978
TaqI TCGA 1 cut(s) 625
TasI AATT 7 cut(s) 4, 512, 663, 849, 857, 915, 1126
TatI WGTACW 1 cut(s) 1198
TauI GCSGC 2 cut(s) 47, 185
TfiI GAWTC 1 cut(s) 622
Tru1I TTAA 2 cut(s) 356, 972
Tru9I TTAA 2 cut(s) 356, 972
TscAI CASTG 3 cut(s) 46, 184, 391
TseFI GTSAC 4 cut(s) 441, 503, 581, 992
TseI GCWGC 3 cut(s) 206, 367, 389
Tsp45I GTSAC 4 cut(s) 441, 503, 581, 992
TspDTI ATGAA 6 cut(s) 17, 42, 558, 603, 612, 801
TspGWI ACGGA 1 cut(s) 1225
TspRI CASTG 3 cut(s) 46, 184, 391
Vha464I CTTAAG 1 cut(s) 355
XapI RAATTY 2 cut(s) 4, 512
XbaI TCTAGA 1 cut(s) 1205
XceI RCATGY 1 cut(s) 281
XspI CTAG 5 cut(s) 240, 909, 1172, 1179, 1206
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.