Rmu_sc0021983.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021983.1
OG0011470
Physical Location & Seq
Reverse (-)
2844 .. 4522
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021983.1_g000002.1.cds

Sequence Viewer

Length: 978 bp
atgcagccttcactgctgcttccaaggtcactctgggtcttttccaattatagattgtcgttgcttaatccttttaacttctccagtaactgtttctctgtttcctctttcagattagaatacccatctcattctgctttaagaacttcaacaggtcgctgtgggttatctccaagttttcaagcttcacgatcatatgctcgtggtgatcataagtattatgatctttttggcaatggaaagcctggtgacaaggatttcaggaaagcctggaagaaagaaattaaggaagacgattgtttatggacaggtagtgaagatgagaaagatgatggaaaggataaaaagagtaatctggaagaagagatccaaaaagttaaacagcaggcaagggagcactctgacctgattgatgccgatgatagcgatgagttgagaagtgtttggtctggaagtgatgaggagaagtctctgtggactggtagtgaaggtgatgacgatgatgatattcctactgaagcctacccaaatgaaagtagtgacaaatacatagataagctgtttgaatttgaggaaacatcaaagtatcggacaatctcagaattattaaaagcagaacaagaaccagaggagctttcacctggaaagcaagccaggaaaattgcagttgagaatgcattgaaaaagttgaagaaagggccagacgggagatatgttaatgtatgggaagtcatgagtgacctagatattctaataggagcatttgaaaatatagtttcaggaccagaatatgcagagctgaggcatggggggcctaagaaattaaatatgcagttcttcaaggatatacaagcgcgcatgagagatccaaattataagttctcgcctgagttgaagctgaaaccgaagagcaaactagttccgaaaaagaaatggcagaagacacagtccaggcggaggaaagcacaaaagcgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

37.55

Weight (kDa)

7.61

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17460 AT5G17460 AT5G17460 AT5G17460 AT5G17460
fragaria_vesca FvH4_1g30050
malus_domestica MD09G1260700.v1.1 MD09G1260800.v1.1
prunus_persica Prupe.3G152500_v2.0.a1
pyrus_communis pycom09g17520
rosa_chinensis RchiOBHm_Chr3g0492091
rosa_laevigata RLG00000022794
rosa_multiflora Rmu_sc0021983.1_g000002
rosa_roxburghii Rroxscaffold_6G00392540
rosa_rugosa Rorug03G0251900
rosa_samantha Rh3AG302000 Rh3BG337900 Rh3CG335400 Rh3DG337500
rosa_wichuraiana Rw3G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 876
AccII CGCG 1 cut(s) 856
AciI CCGC 1 cut(s) 955
AclWI GGATC 2 cut(s) 361, 860
AcsI RAATTY 1 cut(s) 566
AcuI CTGAAG 1 cut(s) 537
AfeI AGCGCT 1 cut(s) 974
AfiI CCNNNNNNNGG 1 cut(s) 957
AgsI TTSAA 8 cut(s) 150, 182, 566, 682, 691, 767, 841, 895
AhlI ACTAGT 1 cut(s) 916
AjnI CCWGG 5 cut(s) 244, 269, 640, 653, 950
AluBI AGCT 5 cut(s) 185, 559, 634, 799, 898
AluI AGCT 5 cut(s) 185, 559, 634, 799, 898
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 2 cut(s) 361, 860
AlwNI CAGNNNCTG 1 cut(s) 90
Aor51HI AGCGCT 1 cut(s) 974
AoxI GGCC 2 cut(s) 698, 812
ApeKI GCWGC 2 cut(s) 4, 16
ApoI RAATTY 1 cut(s) 566
AspLEI GCGC 3 cut(s) 856, 858, 975
AspS9I GGNCC 3 cut(s) 698, 782, 812
AsuHPI GGTGA 4 cut(s) 218, 260, 503, 630
AvaII GGWCC 1 cut(s) 782
BauI CACGAG 1 cut(s) 201
BbsI GAAGAC 2 cut(s) 297, 947
Bbv12I GWGCWC 1 cut(s) 399
BbvCI CCTCAGC 1 cut(s) 800
BbvI GCAGC 2 cut(s) 3, 16
BccI CCATC 2 cut(s) 133, 326
BciT130I CCWGG 5 cut(s) 246, 271, 642, 655, 952
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 474
BcuI ACTAGT 1 cut(s) 916
BfaI CTAG 2 cut(s) 743, 917
BfoI RGCGCY 1 cut(s) 976
BisI GCNGC 2 cut(s) 5, 17
BlsI GCNGC 2 cut(s) 6, 18
Bme1390I CCNGG 5 cut(s) 246, 271, 642, 655, 952
Bme18I GGWCC 1 cut(s) 782
BmgT120I GGNCC 3 cut(s) 698, 782, 812
BmiI GGNNCC 1 cut(s) 813
BmrFI CCNGG 5 cut(s) 246, 271, 642, 655, 952
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 2 cut(s) 297, 947
BpmI CTGGAG 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 800
BsaJI CCNNGG 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 957
Bse1I ACTGG 2 cut(s) 84, 484
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 5 cut(s) 246, 271, 642, 655, 952
BseDI CCNNGG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 957
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 3 cut(s) 612, 791, 879
BseNI ACTGG 2 cut(s) 84, 484
BsePI GCGCGC 1 cut(s) 854
BseRI GAGGAG 2 cut(s) 476, 644
BseXI GCAGC 2 cut(s) 3, 16
Bsh1236I CGCG 1 cut(s) 856
BshFI GGCC 2 cut(s) 700, 814
BsiHKAI GWGCWC 1 cut(s) 399
BslI CCNNNNNNNGG 1 cut(s) 957
BsmAI GTCTC 1 cut(s) 474
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 2 cut(s) 700, 814
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 5 cut(s) 191, 208, 223, 366, 865
BspACI CCGC 1 cut(s) 955
BspANI GGCC 2 cut(s) 700, 814
BspCNI CTCAG 3 cut(s) 611, 792, 880
BspFNI CGCG 1 cut(s) 856
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 1 cut(s) 813
BspPI GGATC 2 cut(s) 361, 860
BspQI GCTCTTC 1 cut(s) 902
BsrDI GCAATG 1 cut(s) 241
BsrI ACTGG 2 cut(s) 84, 484
BssECI CCNNGG 1 cut(s) 23
BssHII GCGCGC 1 cut(s) 854
BssMI GATC 5 cut(s) 191, 208, 223, 366, 865
BssSI CACGAG 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 201
Bst2UI CCWGG 5 cut(s) 246, 271, 642, 655, 952
Bst4CI ACNGT 2 cut(s) 92, 948
Bst6I CTCTTC 2 cut(s) 357, 902
BstC8I GCNNGC 3 cut(s) 387, 651, 856
BstDEI CTNAG 4 cut(s) 598, 800, 816, 888
BstFNI CGCG 1 cut(s) 856
BstH2I RGCGCY 1 cut(s) 976
BstHHI GCGC 3 cut(s) 856, 858, 975
BstKTI GATC 5 cut(s) 194, 211, 226, 369, 868
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 5 cut(s) 191, 208, 223, 366, 865
BstMWI GCNNNNNNNGC 2 cut(s) 13, 811
BstNI CCWGG 5 cut(s) 246, 271, 642, 655, 952
BstSCI CCNGG 5 cut(s) 244, 269, 640, 653, 950
BstUI CGCG 1 cut(s) 856
BstV1I GCAGC 2 cut(s) 3, 16
BstV2I GAAGAC 2 cut(s) 297, 947
BstX2I RGATCY 2 cut(s) 366, 865
BstYI RGATCY 2 cut(s) 366, 865
BsuRI GGCC 2 cut(s) 700, 814
BtgZI GCGATG 1 cut(s) 441
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 3 cut(s) 387, 651, 856
CaiI CAGNNNCTG 1 cut(s) 90
CciI TCATGA 1 cut(s) 732
CfoI GCGC 3 cut(s) 856, 858, 975
Cfr13I GGNCC 3 cut(s) 698, 782, 812
CviAII CATG 3 cut(s) 733, 806, 859
DdeI CTNAG 4 cut(s) 598, 800, 816, 888
DpnI GATC 5 cut(s) 193, 210, 225, 368, 867
DpnII GATC 5 cut(s) 191, 208, 223, 366, 865
Eam1104I CTCTTC 2 cut(s) 357, 902
EarI CTCTTC 2 cut(s) 357, 902
EciI GGCGGA 1 cut(s) 970
Eco130I CCWWGG 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 782
Eco47III AGCGCT 1 cut(s) 974
Eco57I CTGAAG 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 812
EcoRII CCWGG 5 cut(s) 244, 269, 640, 653, 950
EcoT14I CCWWGG 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 679
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 3 cut(s) 736, 809, 862
FatI CATG 3 cut(s) 732, 805, 858
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 5, 17
Fsp4HI GCNGC 2 cut(s) 5, 17
FspBI CTAG 2 cut(s) 743, 917
GlaI GCGC 3 cut(s) 855, 857, 974
GluI GCNGC 2 cut(s) 5, 17
GsuI CTGGAG 1 cut(s) 67
HaeII RGCGCY 1 cut(s) 976
HaeIII GGCC 2 cut(s) 700, 814
HhaI GCGC 3 cut(s) 856, 858, 975
Hin1II CATG 3 cut(s) 736, 809, 862
Hin6I GCGC 3 cut(s) 854, 856, 973
HinP1I GCGC 3 cut(s) 854, 856, 973
HindIII AAGCTT 1 cut(s) 183
HphI GGTGA 4 cut(s) 218, 260, 503, 630
Hpy166II GTNNAC 1 cut(s) 477
Hpy188I TCNGA 5 cut(s) 113, 403, 591, 601, 924
Hpy188III TCNNGA 6 cut(s) 189, 262, 356, 450, 733, 780
Hpy8I GTNNAC 1 cut(s) 477
HpyAV CCTTC 2 cut(s) 18, 482
HpyCH4III ACNGT 2 cut(s) 92, 948
HpyCH4V TGCA 5 cut(s) 4, 665, 677, 794, 832
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 811
HpyF3I CTNAG 4 cut(s) 598, 800, 816, 888
Hsp92II CATG 3 cut(s) 736, 809, 862
HspAI GCGC 3 cut(s) 854, 856, 973
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 5 cut(s) 191, 208, 223, 366, 865
LguI GCTCTTC 1 cut(s) 902
LmnI GCTCC 3 cut(s) 394, 631, 758
Lsp1109I GCAGC 2 cut(s) 3, 16
LweI GCATC 1 cut(s) 403
MaeI CTAG 2 cut(s) 743, 917
MaeIII GTNAC 5 cut(s) 27, 86, 248, 539, 737
MalI GATC 5 cut(s) 193, 210, 225, 368, 867
MboI GATC 5 cut(s) 191, 208, 223, 366, 865
MboII GAAGA 9 cut(s) 286, 302, 329, 371, 374, 703, 829, 919, 952
MflI RGATCY 2 cut(s) 366, 865
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 7 cut(s) 46, 282, 566, 602, 660, 821, 871
MnlI CCTC 6 cut(s) 115, 454, 565, 622, 795, 951
Mph1103I ATGCAT 1 cut(s) 679
MseI TTAA 8 cut(s) 66, 75, 140, 285, 378, 608, 717, 824
MspR9I CCNGG 5 cut(s) 246, 271, 642, 655, 952
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 5 cut(s) 246, 271, 642, 655, 952
MvnI CGCG 1 cut(s) 856
MwoI GCNNNNNNNGC 2 cut(s) 13, 811
NdeI CATATG 1 cut(s) 196
NdeII GATC 5 cut(s) 191, 208, 223, 366, 865
NlaIII CATG 3 cut(s) 736, 809, 862
NlaIV GGNNCC 1 cut(s) 813
NmuCI GTSAC 4 cut(s) 27, 248, 539, 737
NsiI ATGCAT 1 cut(s) 679
PagI TCATGA 1 cut(s) 732
PauI GCGCGC 1 cut(s) 854
PciSI GCTCTTC 1 cut(s) 902
PctI GAATGC 1 cut(s) 679
PflFI GACNNNGTC 1 cut(s) 946
PkrI GCNGC 2 cut(s) 6, 18
PsiI TTATAA 1 cut(s) 876
Psp6I CCWGG 5 cut(s) 244, 269, 640, 653, 950
PspGI CCWGG 5 cut(s) 244, 269, 640, 653, 950
PspN4I GGNNCC 1 cut(s) 813
PspPI GGNCC 3 cut(s) 698, 782, 812
PstNI CAGNNNCTG 1 cut(s) 90
PsuI RGATCY 2 cut(s) 366, 865
PsyI GACNNNGTC 1 cut(s) 946
PteI GCGCGC 1 cut(s) 854
SapI GCTCTTC 1 cut(s) 902
SaqAI TTAA 8 cut(s) 66, 75, 140, 285, 378, 608, 717, 824
SatI GCNGC 2 cut(s) 5, 17
Sau3AI GATC 5 cut(s) 191, 208, 223, 366, 865
Sau96I GGNCC 3 cut(s) 698, 782, 812
ScrFI CCNGG 5 cut(s) 246, 271, 642, 655, 952
SduI GDGCHC 1 cut(s) 399
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 1 cut(s) 782
SpeI ACTAGT 1 cut(s) 916
Sse9I AATT 7 cut(s) 46, 282, 566, 602, 660, 821, 871
SsiI CCGC 1 cut(s) 955
SspMI CTAG 2 cut(s) 743, 917
StyD4I CCNGG 5 cut(s) 244, 269, 640, 653, 950
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 2 cut(s) 92, 948
TasI AATT 7 cut(s) 46, 282, 566, 602, 660, 821, 871
Tru1I TTAA 8 cut(s) 66, 75, 140, 285, 378, 608, 717, 824
Tru9I TTAA 8 cut(s) 66, 75, 140, 285, 378, 608, 717, 824
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 4 cut(s) 27, 248, 539, 737
TseI GCWGC 2 cut(s) 4, 16
Tsp45I GTSAC 4 cut(s) 27, 248, 539, 737
TspDTI ATGAA 1 cut(s) 546
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 946
VpaK11BI GGWCC 1 cut(s) 782
XapI RAATTY 1 cut(s) 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XspI CTAG 2 cut(s) 743, 917
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.