Rh3BG337900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011470
Physical Location & Seq
Reverse (-)
36165237 .. 36166897
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG337900.1

Sequence Viewer

Length: 882 bp
ATGCAGCCTTCACTGCTGCTTCCAAGATTAGAATACCCATCTGGTTCTGCTTTAACAGGTCCCTGTGGGTTATCTCCAACTTTTCAAGCTTCACGATCATATGCTCGTGGTGATCGTAAATATTATGATCTTTTTGGCAATGGAAAACCCGGTGACAAGGATTTCAGGAAAGCCTGGAAGACAGAAATTAAGGAAGACGATTGTTTATGGACAGGTAGTGAAGATGAGAAAGATGATGGAAAGGATAAAAAGAGTCATCTGGAAGAAGAGATCCAAAAAGTTAAACAGCAGGTGAGGGAGCACTCTGACCTGATCGATGCCGATGATAGTGATGAGTTGAGAAGTGTTTGGTCTGGAAGTGATGAGGAGAAGTCTCTGTGGACTGGTAGTGAAGGTGATGATGATGATGATATTCCTACTGAAGCCTACCCAAATGAAAGTAGTGACAAATACATAGATAAGCTGTTTGAATTTGAGGAAACATCAAAGTATCGGACAATCTCAGAATTATTAAAAGCAGAACAAGAACCGGAGGAGCTTTCACCTGGAAAGCAAGCCAGGAAAATTGCAGTTGAGAATGCATTGAAAAAGTTGAAGAAAGGGCCAGACGGGAGATATGTTAATGTATGGGAAGTCATGAGTGACCTAGATATTCTAATAGGAGCATTTGAAAATATAGTTTCAGGACCAGAATATGCAGAGCTGAGGCATGGGGGGCCTAAGAAATTAAATATGCAGTTCTTCAAGGATATACAAGCGCGCATGAGAGATCCAAATTATAAGTTCTCGCCTGAGTTGAAGCTAAAACCGAAGAGCAAACTAGTTCCGAAAAAGAAATGGCAGAAGACACAGTCTAGGCGGAGGAAAGCACAAAAGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.72

Weight (kDa)

5.89

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17460 AT5G17460 AT5G17460 AT5G17460 AT5G17460
fragaria_vesca FvH4_1g30050
malus_domestica MD09G1260700.v1.1 MD09G1260800.v1.1
prunus_persica Prupe.3G152500_v2.0.a1
pyrus_communis pycom09g17520
rosa_chinensis RchiOBHm_Chr3g0492091
rosa_laevigata RLG00000022794
rosa_multiflora Rmu_sc0021983.1_g000002
rosa_roxburghii Rroxscaffold_6G00392540
rosa_rugosa Rorug03G0251900
rosa_samantha Rh3AG302000 Rh3BG337900 Rh3CG335400 Rh3DG337500
rosa_wichuraiana Rw3G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
AarI CACCTGC 1 cut(s) 280
Acc36I ACCTGC 1 cut(s) 280
AccII CGCG 1 cut(s) 760
AciI CCGC 1 cut(s) 859
AclWI GGATC 2 cut(s) 265, 764
AcsI RAATTY 1 cut(s) 470
AcuI CTGAAG 1 cut(s) 441
AfeI AGCGCT 1 cut(s) 878
AgsI TTSAA 7 cut(s) 86, 470, 586, 595, 671, 745, 799
AhlI ACTAGT 1 cut(s) 820
AjnI CCWGG 3 cut(s) 173, 544, 557
AluBI AGCT 5 cut(s) 89, 463, 538, 703, 802
AluI AGCT 5 cut(s) 89, 463, 538, 703, 802
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 2 cut(s) 265, 764
Aor51HI AGCGCT 1 cut(s) 878
AoxI GGCC 2 cut(s) 602, 716
ApeKI GCWGC 2 cut(s) 4, 16
ApoI RAATTY 1 cut(s) 470
AspLEI GCGC 3 cut(s) 760, 762, 879
AspS9I GGNCC 4 cut(s) 59, 602, 686, 716
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 5 cut(s) 122, 164, 304, 407, 534
AvaII GGWCC 2 cut(s) 59, 686
BauI CACGAG 1 cut(s) 105
BbsI GAAGAC 3 cut(s) 185, 201, 851
Bbv12I GWGCWC 1 cut(s) 303
BbvCI CCTCAGC 1 cut(s) 704
BbvI GCAGC 2 cut(s) 3, 16
BccI CCATC 2 cut(s) 46, 230
BciT130I CCWGG 3 cut(s) 175, 546, 559
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 378
BcuI ACTAGT 1 cut(s) 820
BfaI CTAG 3 cut(s) 647, 821, 855
BfoI RGCGCY 1 cut(s) 880
BfuAI ACCTGC 1 cut(s) 280
BisI GCNGC 2 cut(s) 5, 17
BlsI GCNGC 2 cut(s) 6, 18
Bme1390I CCNGG 4 cut(s) 150, 175, 546, 559
Bme18I GGWCC 2 cut(s) 59, 686
BmgT120I GGNCC 4 cut(s) 59, 602, 686, 716
BmiI GGNNCC 2 cut(s) 61, 717
BmrFI CCNGG 4 cut(s) 150, 175, 546, 559
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 3 cut(s) 185, 201, 851
Bpu10I CCTNAGC 1 cut(s) 704
BpuMI CCSGG 1 cut(s) 150
Bsa29I ATCGAT 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 388
Bse3DI GCAATG 1 cut(s) 145
BseBI CCWGG 3 cut(s) 175, 546, 559
BseCI ATCGAT 1 cut(s) 315
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 3 cut(s) 516, 695, 783
BseNI ACTGG 1 cut(s) 388
BsePI GCGCGC 1 cut(s) 758
BseRI GAGGAG 2 cut(s) 380, 548
BseXI GCAGC 2 cut(s) 3, 16
Bsh1236I CGCG 1 cut(s) 760
BshFI GGCC 2 cut(s) 604, 718
BshVI ATCGAT 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 2 cut(s) 150, 530
BslFI GGGAC 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 45
BsmI GAATGC 1 cut(s) 583
BsnI GGCC 2 cut(s) 604, 718
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 6 cut(s) 95, 112, 127, 270, 312, 769
BspACI CCGC 1 cut(s) 859
BspANI GGCC 2 cut(s) 604, 718
BspCNI CTCAG 3 cut(s) 515, 696, 784
BspDI ATCGAT 1 cut(s) 315
BspFNI CGCG 1 cut(s) 760
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 2 cut(s) 61, 717
BspMI ACCTGC 1 cut(s) 280
BspPI GGATC 2 cut(s) 265, 764
BspQI GCTCTTC 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 388
BssHII GCGCGC 1 cut(s) 758
BssMI GATC 6 cut(s) 95, 112, 127, 270, 312, 769
BssSI CACGAG 1 cut(s) 105
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 3 cut(s) 175, 546, 559
Bst4CI ACNGT 1 cut(s) 852
Bst6I CTCTTC 2 cut(s) 261, 806
BstC8I GCNNGC 2 cut(s) 555, 760
BstDEI CTNAG 4 cut(s) 502, 704, 720, 792
BstFNI CGCG 1 cut(s) 760
BstH2I RGCGCY 1 cut(s) 880
BstHHI GCGC 3 cut(s) 760, 762, 879
BstKTI GATC 6 cut(s) 98, 115, 130, 273, 315, 772
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 6 cut(s) 95, 112, 127, 270, 312, 769
BstMWI GCNNNNNNNGC 2 cut(s) 13, 715
BstNI CCWGG 3 cut(s) 175, 546, 559
BstSCI CCNGG 4 cut(s) 148, 173, 544, 557
BstUI CGCG 1 cut(s) 760
BstV1I GCAGC 2 cut(s) 3, 16
BstV2I GAAGAC 3 cut(s) 185, 201, 851
BstX2I RGATCY 2 cut(s) 270, 769
BstYI RGATCY 2 cut(s) 270, 769
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 2 cut(s) 604, 718
BsuTUI ATCGAT 1 cut(s) 315
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
BveI ACCTGC 1 cut(s) 280
Cac8I GCNNGC 2 cut(s) 555, 760
CciI TCATGA 1 cut(s) 636
CfoI GCGC 3 cut(s) 760, 762, 879
Cfr13I GGNCC 4 cut(s) 59, 602, 686, 716
ClaI ATCGAT 1 cut(s) 315
CviAII CATG 3 cut(s) 637, 710, 763
DdeI CTNAG 4 cut(s) 502, 704, 720, 792
DpnI GATC 6 cut(s) 97, 114, 129, 272, 314, 771
DpnII GATC 6 cut(s) 95, 112, 127, 270, 312, 769
Eam1104I CTCTTC 2 cut(s) 261, 806
EarI CTCTTC 2 cut(s) 261, 806
EciI GGCGGA 1 cut(s) 874
Eco47I GGWCC 2 cut(s) 59, 686
Eco47III AGCGCT 1 cut(s) 878
Eco57I CTGAAG 1 cut(s) 441
EcoO109I RGGNCCY 2 cut(s) 59, 716
EcoRII CCWGG 3 cut(s) 173, 544, 557
EcoT22I ATGCAT 1 cut(s) 583
FaeI CATG 3 cut(s) 640, 713, 766
FaqI GGGAC 1 cut(s) 45
FatI CATG 3 cut(s) 636, 709, 762
FauNDI CATATG 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 5, 17
Fsp4HI GCNGC 2 cut(s) 5, 17
FspBI CTAG 3 cut(s) 647, 821, 855
GlaI GCGC 3 cut(s) 759, 761, 878
GluI GCNGC 2 cut(s) 5, 17
HaeII RGCGCY 1 cut(s) 880
HaeIII GGCC 2 cut(s) 604, 718
HapII CCGG 2 cut(s) 150, 530
HhaI GCGC 3 cut(s) 760, 762, 879
Hin1II CATG 3 cut(s) 640, 713, 766
Hin6I GCGC 3 cut(s) 758, 760, 877
HinP1I GCGC 3 cut(s) 758, 760, 877
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 1 cut(s) 253
HpaII CCGG 2 cut(s) 150, 530
HphI GGTGA 5 cut(s) 122, 164, 304, 407, 534
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 4 cut(s) 307, 495, 505, 828
Hpy188III TCNNGA 6 cut(s) 93, 166, 260, 354, 637, 684
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 2 cut(s) 18, 386
HpyCH4III ACNGT 1 cut(s) 852
HpyCH4V TGCA 5 cut(s) 4, 569, 581, 698, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 715
HpyF3I CTNAG 4 cut(s) 502, 704, 720, 792
Hsp92II CATG 3 cut(s) 640, 713, 766
HspAI GCGC 3 cut(s) 758, 760, 877
Kzo9I GATC 6 cut(s) 95, 112, 127, 270, 312, 769
LguI GCTCTTC 1 cut(s) 806
LmnI GCTCC 3 cut(s) 298, 535, 662
Lsp1109I GCAGC 2 cut(s) 3, 16
LweI GCATC 1 cut(s) 307
MaeI CTAG 3 cut(s) 647, 821, 855
MaeIII GTNAC 3 cut(s) 152, 443, 641
MalI GATC 6 cut(s) 97, 114, 129, 272, 314, 771
MboI GATC 6 cut(s) 95, 112, 127, 270, 312, 769
MboII GAAGA 9 cut(s) 190, 206, 233, 275, 278, 607, 733, 823, 856
MflI RGATCY 2 cut(s) 270, 769
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 6 cut(s) 186, 470, 506, 564, 725, 775
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 6 cut(s) 288, 358, 469, 526, 699, 855
Mph1103I ATGCAT 1 cut(s) 583
MseI TTAA 6 cut(s) 53, 189, 282, 512, 621, 728
MspI CCGG 2 cut(s) 150, 530
MspR9I CCNGG 4 cut(s) 150, 175, 546, 559
Mva1269I GAATGC 1 cut(s) 583
MvaI CCWGG 3 cut(s) 175, 546, 559
MvnI CGCG 1 cut(s) 760
MwoI GCNNNNNNNGC 2 cut(s) 13, 715
NciI CCSGG 1 cut(s) 150
NdeI CATATG 1 cut(s) 100
NdeII GATC 6 cut(s) 95, 112, 127, 270, 312, 769
NlaIII CATG 3 cut(s) 640, 713, 766
NlaIV GGNNCC 2 cut(s) 61, 717
NmuCI GTSAC 3 cut(s) 152, 443, 641
NsiI ATGCAT 1 cut(s) 583
PagI TCATGA 1 cut(s) 636
PaqCI CACCTGC 1 cut(s) 280
PauI GCGCGC 1 cut(s) 758
PciSI GCTCTTC 1 cut(s) 806
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PctI GAATGC 1 cut(s) 583
PflFI GACNNNGTC 1 cut(s) 850
PkrI GCNGC 2 cut(s) 6, 18
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PpuMI RGGWCCY 1 cut(s) 59
PsiI TTATAA 1 cut(s) 780
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 3 cut(s) 173, 544, 557
PspGI CCWGG 3 cut(s) 173, 544, 557
PspN4I GGNNCC 2 cut(s) 61, 717
PspPI GGNCC 4 cut(s) 59, 602, 686, 716
PspPPI RGGWCCY 1 cut(s) 59
PsuI RGATCY 2 cut(s) 270, 769
PsyI GACNNNGTC 1 cut(s) 850
PteI GCGCGC 1 cut(s) 758
SapI GCTCTTC 1 cut(s) 806
SaqAI TTAA 6 cut(s) 53, 189, 282, 512, 621, 728
SatI GCNGC 2 cut(s) 5, 17
Sau3AI GATC 6 cut(s) 95, 112, 127, 270, 312, 769
Sau96I GGNCC 4 cut(s) 59, 602, 686, 716
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 4 cut(s) 150, 175, 546, 559
SduI GDGCHC 1 cut(s) 303
SfaNI GCATC 1 cut(s) 307
SinI GGWCC 2 cut(s) 59, 686
SpeI ACTAGT 1 cut(s) 820
Sse9I AATT 6 cut(s) 186, 470, 506, 564, 725, 775
SsiI CCGC 1 cut(s) 859
SspI AATATT 1 cut(s) 122
SspMI CTAG 3 cut(s) 647, 821, 855
StyD4I CCNGG 4 cut(s) 148, 173, 544, 557
TaaI ACNGT 1 cut(s) 852
TaqI TCGA 1 cut(s) 315
TasI AATT 6 cut(s) 186, 470, 506, 564, 725, 775
Tru1I TTAA 6 cut(s) 53, 189, 282, 512, 621, 728
Tru9I TTAA 6 cut(s) 53, 189, 282, 512, 621, 728
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 3 cut(s) 152, 443, 641
TseI GCWGC 2 cut(s) 4, 16
Tsp45I GTSAC 3 cut(s) 152, 443, 641
TspDTI ATGAA 1 cut(s) 450
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 850
VpaK11BI GGWCC 2 cut(s) 59, 686
XapI RAATTY 1 cut(s) 470
XspI CTAG 3 cut(s) 647, 821, 855
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.