Rw3G026660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011470
Physical Location & Seq
Reverse (-)
36742100 .. 36744086
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G026660.1

Sequence Viewer

Length: 1044 bp
ATGGCTCGGAGGCTCCGTTCCTTTATTTCCCTCAATTCTTGTCTTTGCAAACTCCCAAAACCCCAAATGCAGCCGTCACTGCTGCTTCCAAGGTCACTCTGGGTCTTTTCCAATTATAGATTGTCGTTGCTTAATCCTTTTAACTTCTCAAGTAACTGTTTCTCTGTTTCCTCTTTCAGGTTAGAATACCCATCTGATTCTGCTTTAAGAACTTCAACAGGTCCCTGTGGGTTATCTCCAAGTTTTCAAGCTTCACGATCATATGCTCGTGGTGATCGTAAATATTATGATCTTTTTGGCAAGGGAAAACCCGGTGACAAGGATTTCAGGAAAGCCTGGAAGACAGAAATTAAGGAAGACGATTGTTTATGGACAGGTAGTGAAGATGAGAAAGATGATGGAAAGGATAAAGAGAGTAATCTGGAAGAAGAGATCCAAAAAGTTAAACAGCAGGCAAGGGAGCACTCTGACCTGATTGATGCCGATGATAGTGATGAGTTGAGAAGTGTTTGGTCTGGAAGTGATGAGGAGAAGTCTCTGTGGACTGGTAGTGAAGGTGATGACGATGATGATATTCCTACTGAAGCCTACCCAAATGAAAGTAGTGACAAATACATAGATAAGCTGTTTGAATTTGAGGAAACATCAAAGTATCGGACAATCTCAGAATTATTAAAAGCAGAACAAGAACCAGAGGAGCTTTCACCTGGAAAGCAAGCCAGGAAAATTGCAGTTGAGAATGCATTGAAAAAGTTGAAGAAAGGGCCAGACGGGAGATATGTTAATGTATGGGAAGTCATGAGTGACCTAGATATTCTAATAGGAGCATTTGAAAATATTGTTTCAGGACCAGAATATGCAGAGCTGAGACATGGGGGGCCTAAGAAATTAAATATGCAGTTCTTCAAGGATATACAAGCGCGCATGAGAGATCCAAATTATAAGTTCTCGCCAGAGTTGAAACTGAAACCGAAGAGCAAACTAGTTCCGAAAAAGAAATGGCAGAAGACACAGTCTAGGAGGAGGAAAGCACAAAAGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

40.02

Weight (kDa)

8.36

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17460 AT5G17460 AT5G17460 AT5G17460 AT5G17460
fragaria_vesca FvH4_1g30050
malus_domestica MD09G1260700.v1.1 MD09G1260800.v1.1
prunus_persica Prupe.3G152500_v2.0.a1
pyrus_communis pycom09g17520
rosa_chinensis RchiOBHm_Chr3g0492091
rosa_laevigata RLG00000022794
rosa_multiflora Rmu_sc0021983.1_g000002
rosa_roxburghii Rroxscaffold_6G00392540
rosa_rugosa Rorug03G0251900
rosa_samantha Rh3AG302000 Rh3BG337900 Rh3CG335400 Rh3DG337500
rosa_wichuraiana Rw3G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 942
AccII CGCG 1 cut(s) 922
AclWI GGATC 2 cut(s) 427, 926
AcsI RAATTY 1 cut(s) 632
AcuI CTGAAG 1 cut(s) 603
AfeI AGCGCT 1 cut(s) 1040
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 8 cut(s) 216, 248, 632, 748, 757, 833, 907, 961
AhlI ACTAGT 1 cut(s) 982
AjnI CCWGG 3 cut(s) 335, 706, 719
AloI GAACNNNNNNTCC 1 cut(s) 33
AluBI AGCT 4 cut(s) 251, 625, 700, 865
AluI AGCT 4 cut(s) 251, 625, 700, 865
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 2 cut(s) 540, 862
AlwI GGATC 2 cut(s) 427, 926
Aor51HI AGCGCT 1 cut(s) 1040
AoxI GGCC 2 cut(s) 764, 878
ApeKI GCWGC 2 cut(s) 70, 82
ApoI RAATTY 1 cut(s) 632
AspLEI GCGC 3 cut(s) 922, 924, 1041
AspS9I GGNCC 4 cut(s) 221, 764, 848, 878
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 4 cut(s) 284, 326, 569, 696
AvaII GGWCC 2 cut(s) 221, 848
BauI CACGAG 1 cut(s) 267
BbsI GAAGAC 3 cut(s) 347, 363, 1013
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 69, 82
BccI CCATC 2 cut(s) 199, 392
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 3 cut(s) 337, 708, 721
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 540, 862
BcuI ACTAGT 1 cut(s) 982
BfaI CTAG 3 cut(s) 809, 983, 1017
BfoI RGCGCY 1 cut(s) 1042
BisI GCNGC 2 cut(s) 71, 83
BlsI GCNGC 2 cut(s) 72, 84
Bme1390I CCNGG 4 cut(s) 312, 337, 708, 721
Bme18I GGWCC 2 cut(s) 221, 848
BmgT120I GGNCC 4 cut(s) 221, 764, 848, 878
BmiI GGNNCC 3 cut(s) 14, 223, 879
BmrFI CCNGG 4 cut(s) 312, 337, 708, 721
BmsI GCATC 1 cut(s) 469
BpiI GAAGAC 3 cut(s) 347, 363, 1013
BpuEI CTTGAG 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 89
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 550
BseBI CCWGG 3 cut(s) 337, 708, 721
BseDI CCNNGG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 678, 857
BseNI ACTGG 1 cut(s) 550
BsePI GCGCGC 1 cut(s) 920
BseRI GAGGAG 3 cut(s) 542, 710, 1036
BseXI GCAGC 2 cut(s) 69, 82
Bsh1236I CGCG 1 cut(s) 922
BshFI GGCC 2 cut(s) 766, 880
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 540, 862
BsmFI GGGAC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 2 cut(s) 766, 880
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 5 cut(s) 257, 274, 289, 432, 931
BspANI GGCC 2 cut(s) 766, 880
BspCNI CTCAG 2 cut(s) 677, 858
BspFNI CGCG 1 cut(s) 922
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 3 cut(s) 14, 223, 879
BspPI GGATC 2 cut(s) 427, 926
BspQI GCTCTTC 1 cut(s) 968
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 1 cut(s) 89
BssHII GCGCGC 1 cut(s) 920
BssMI GATC 5 cut(s) 257, 274, 289, 432, 931
BssSI CACGAG 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 89
Bst2BI CACGAG 1 cut(s) 267
Bst2UI CCWGG 3 cut(s) 337, 708, 721
Bst4CI ACNGT 2 cut(s) 158, 1014
Bst6I CTCTTC 2 cut(s) 423, 968
BstC8I GCNNGC 3 cut(s) 453, 717, 922
BstDEI CTNAG 3 cut(s) 664, 866, 882
BstENI CCTNNNNNAGG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 922
BstH2I RGCGCY 1 cut(s) 1042
BstHHI GCGC 3 cut(s) 922, 924, 1041
BstKTI GATC 5 cut(s) 260, 277, 292, 435, 934
BstMAI GTCTC 2 cut(s) 540, 862
BstMBI GATC 5 cut(s) 257, 274, 289, 432, 931
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 3 cut(s) 337, 708, 721
BstSCI CCNGG 4 cut(s) 310, 335, 706, 719
BstUI CGCG 1 cut(s) 922
BstV1I GCAGC 2 cut(s) 69, 82
BstV2I GAAGAC 3 cut(s) 347, 363, 1013
BstX2I RGATCY 2 cut(s) 432, 931
BstYI RGATCY 2 cut(s) 432, 931
BsuRI GGCC 2 cut(s) 766, 880
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 3 cut(s) 453, 717, 922
CciI TCATGA 1 cut(s) 798
CfoI GCGC 3 cut(s) 922, 924, 1041
Cfr13I GGNCC 4 cut(s) 221, 764, 848, 878
CviAII CATG 3 cut(s) 799, 872, 925
DdeI CTNAG 3 cut(s) 664, 866, 882
DpnI GATC 5 cut(s) 259, 276, 291, 434, 933
DpnII GATC 5 cut(s) 257, 274, 289, 432, 931
Eam1104I CTCTTC 2 cut(s) 423, 968
EarI CTCTTC 2 cut(s) 423, 968
Eco130I CCWWGG 1 cut(s) 89
Eco47I GGWCC 2 cut(s) 221, 848
Eco47III AGCGCT 1 cut(s) 1040
Eco57I CTGAAG 1 cut(s) 603
EcoNI CCTNNNNNAGG 1 cut(s) 175
EcoO109I RGGNCCY 2 cut(s) 221, 878
EcoRII CCWGG 3 cut(s) 335, 706, 719
EcoT14I CCWWGG 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 745
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 3 cut(s) 802, 875, 928
FaqI GGGAC 1 cut(s) 207
FatI CATG 3 cut(s) 798, 871, 924
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 71, 83
Fsp4HI GCNGC 2 cut(s) 71, 83
FspBI CTAG 3 cut(s) 809, 983, 1017
GlaI GCGC 3 cut(s) 921, 923, 1040
GluI GCNGC 2 cut(s) 71, 83
HaeII RGCGCY 1 cut(s) 1042
HaeIII GGCC 2 cut(s) 766, 880
HapII CCGG 1 cut(s) 312
HhaI GCGC 3 cut(s) 922, 924, 1041
Hin1II CATG 3 cut(s) 802, 875, 928
Hin6I GCGC 3 cut(s) 920, 922, 1039
HinP1I GCGC 3 cut(s) 920, 922, 1039
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 312
HphI GGTGA 4 cut(s) 284, 326, 569, 696
Hpy166II GTNNAC 1 cut(s) 543
Hpy188I TCNGA 6 cut(s) 9, 196, 469, 657, 667, 990
Hpy188III TCNNGA 6 cut(s) 255, 328, 422, 516, 799, 846
Hpy8I GTNNAC 1 cut(s) 543
HpyAV CCTTC 1 cut(s) 548
HpyCH4III ACNGT 2 cut(s) 158, 1014
HpyCH4V TGCA 6 cut(s) 48, 70, 731, 743, 860, 898
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 3 cut(s) 664, 866, 882
Hsp92II CATG 3 cut(s) 802, 875, 928
HspAI GCGC 3 cut(s) 920, 922, 1039
Kzo9I GATC 5 cut(s) 257, 274, 289, 432, 931
LguI GCTCTTC 1 cut(s) 968
LmnI GCTCC 4 cut(s) 18, 460, 697, 824
Lsp1109I GCAGC 2 cut(s) 69, 82
LweI GCATC 1 cut(s) 469
MaeI CTAG 3 cut(s) 809, 983, 1017
MaeIII GTNAC 6 cut(s) 75, 93, 152, 314, 605, 803
MalI GATC 5 cut(s) 259, 276, 291, 434, 933
MboI GATC 5 cut(s) 257, 274, 289, 432, 931
MboII GAAGA 9 cut(s) 352, 368, 395, 437, 440, 769, 895, 985, 1018
MflI RGATCY 2 cut(s) 432, 931
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 8 cut(s) 34, 112, 348, 632, 668, 726, 887, 937
MnlI CCTC 8 cut(s) 3, 41, 181, 520, 631, 688, 1014, 1017
Mph1103I ATGCAT 1 cut(s) 745
MseI TTAA 8 cut(s) 132, 141, 206, 351, 444, 674, 783, 890
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 4 cut(s) 312, 337, 708, 721
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 3 cut(s) 337, 708, 721
MvnI CGCG 1 cut(s) 922
MwoI GCNNNNNNNGC 1 cut(s) 79
NciI CCSGG 1 cut(s) 312
NdeI CATATG 1 cut(s) 262
NdeII GATC 5 cut(s) 257, 274, 289, 432, 931
NlaIII CATG 3 cut(s) 802, 875, 928
NlaIV GGNNCC 3 cut(s) 14, 223, 879
NmuCI GTSAC 5 cut(s) 75, 93, 314, 605, 803
NsiI ATGCAT 1 cut(s) 745
PagI TCATGA 1 cut(s) 798
PauI GCGCGC 1 cut(s) 920
PciSI GCTCTTC 1 cut(s) 968
PcsI WCGNNNNNNNCGW 2 cut(s) 13, 274
PctI GAATGC 1 cut(s) 745
PfeI GAWTC 1 cut(s) 197
PflFI GACNNNGTC 1 cut(s) 1012
PkrI GCNGC 2 cut(s) 72, 84
PpuMI RGGWCCY 1 cut(s) 221
PsiI TTATAA 1 cut(s) 942
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 3 cut(s) 335, 706, 719
PspGI CCWGG 3 cut(s) 335, 706, 719
PspN4I GGNNCC 3 cut(s) 14, 223, 879
PspPI GGNCC 4 cut(s) 221, 764, 848, 878
PspPPI RGGWCCY 1 cut(s) 221
PsuI RGATCY 2 cut(s) 432, 931
PsyI GACNNNGTC 1 cut(s) 1012
PteI GCGCGC 1 cut(s) 920
SapI GCTCTTC 1 cut(s) 968
SaqAI TTAA 8 cut(s) 132, 141, 206, 351, 444, 674, 783, 890
SatI GCNGC 2 cut(s) 71, 83
Sau3AI GATC 5 cut(s) 257, 274, 289, 432, 931
Sau96I GGNCC 4 cut(s) 221, 764, 848, 878
ScrFI CCNGG 4 cut(s) 312, 337, 708, 721
SduI GDGCHC 1 cut(s) 465
SfaNI GCATC 1 cut(s) 469
SinI GGWCC 2 cut(s) 221, 848
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
SpeI ACTAGT 1 cut(s) 982
Sse9I AATT 8 cut(s) 34, 112, 348, 632, 668, 726, 887, 937
SspI AATATT 2 cut(s) 284, 838
SspMI CTAG 3 cut(s) 809, 983, 1017
StyD4I CCNGG 4 cut(s) 310, 335, 706, 719
StyI CCWWGG 1 cut(s) 89
TaaI ACNGT 2 cut(s) 158, 1014
TasI AATT 8 cut(s) 34, 112, 348, 632, 668, 726, 887, 937
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 8 cut(s) 132, 141, 206, 351, 444, 674, 783, 890
Tru9I TTAA 8 cut(s) 132, 141, 206, 351, 444, 674, 783, 890
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 5 cut(s) 75, 93, 314, 605, 803
TseI GCWGC 2 cut(s) 70, 82
Tsp45I GTSAC 5 cut(s) 75, 93, 314, 605, 803
TspDTI ATGAA 1 cut(s) 612
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 1 cut(s) 84
Tth111I GACNNNGTC 1 cut(s) 1012
VpaK11BI GGWCC 2 cut(s) 221, 848
XagI CCTNNNNNAGG 1 cut(s) 175
XapI RAATTY 1 cut(s) 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 96
XspI CTAG 3 cut(s) 809, 983, 1017
Zsp2I ATGCAT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.