pycom09g17520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0011470
Physical Location & Seq
Reverse (-)
18018918 .. 18020591
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17520.2

Sequence Viewer

Length: 840 bp
ATGGGAACATTTTACCTACTAAGTTTCTCAATATCCCAACATTGGTTTCACGATCGATATGCTTGTGGTGGTCATAAACCTTATGATCTCTTTGGAAATGGAAAACCTGGTGACAAGGAATTTAGGGAAGCCTGGAAGAAAGAGATTGATGAAGATGATACTTTATGGACAGGGAGTGAAGACGAAAGTGACAATGAAAAGGATGAAAAGAGTCGTCTTGAAAAAGAGATTTGTAAAGTAAGACAGCAGGCAAGGGAGCACTCTGACCTGATTGATGCCGATGATAGTGATGAGTTGAGAAGTGTTTGGTCTGGAAGCGACGAGGAGAAGTCTCTGTGGACTGGGAGTGAAGATGATGATGATGACGATATTCCTACTGAAGCCTACCCAAATGAAAGTAGTGATAAACATATAGACAAACTATTTGAGTTTGAAGAAACGTCAAAGTATCGGACAATTTCTGAATTATTGAAAGCTGAGCAGGAACCAGAGGAGTTGTCCCCTGGAAAGCAAGCTAGGAAAATTGCAGTTGAGAATGCCTTGAAAAAGTTGAAGAAAGGGCCAGATGGGCGTTATATTAACGTGTGGGAGGTCATGAGTGACTTGGATATTTTGGTAGGAGCATTTGAAAATATAGTATCAGGGCCAGAATATGCAGAGCTTAGACAGGGAGGGCCTAAGAAACTGAATATGCAGTTTTTCAAGGATATACAAATGCGTATGAGAGATCCTAATTATAAGTTCTCACCTGAGTTGAAGTTGAAACCAAAGAGCAAACTAGTTGCTAGAAAGAAATGGCAGAAAGTACAATCTAGACGGAGGAAAGCACAAAAGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

32.56

Weight (kDa)

5.34

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17460 AT5G17460 AT5G17460 AT5G17460 AT5G17460
fragaria_vesca FvH4_1g30050
malus_domestica MD09G1260700.v1.1 MD09G1260800.v1.1
prunus_persica Prupe.3G152500_v2.0.a1
pyrus_communis pycom09g17520
rosa_chinensis RchiOBHm_Chr3g0492091
rosa_laevigata RLG00000022794
rosa_multiflora Rmu_sc0021983.1_g000002
rosa_roxburghii Rroxscaffold_6G00392540
rosa_rugosa Rorug03G0251900
rosa_samantha Rh3AG302000 Rh3BG337900 Rh3CG335400 Rh3DG337500
rosa_wichuraiana Rw3G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AclWI GGATC 1 cut(s) 722
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 1 cut(s) 807
AfeI AGCGCT 1 cut(s) 836
AfiI CCNNNNNNNGG 1 cut(s) 42
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 9 cut(s) 221, 434, 472, 544, 553, 629, 703, 757, 763
AhlI ACTAGT 1 cut(s) 778
AjnI CCWGG 3 cut(s) 106, 131, 502
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 3 cut(s) 476, 515, 661
AluI AGCT 3 cut(s) 476, 515, 661
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 1 cut(s) 722
Aor51HI AGCGCT 1 cut(s) 836
AoxI GGCC 3 cut(s) 560, 644, 674
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspLEI GCGC 1 cut(s) 837
AspS9I GGNCC 3 cut(s) 560, 644, 674
AsuHPI GGTGA 2 cut(s) 122, 738
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 261
BccI CCATC 1 cut(s) 560
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 3 cut(s) 108, 133, 504
BcoDI GTCTC 1 cut(s) 336
BcuI ACTAGT 1 cut(s) 778
BfaI CTAG 4 cut(s) 516, 779, 786, 813
BfoI RGCGCY 1 cut(s) 838
BglI GCCNNNNNGGC 1 cut(s) 568
BlpI GCTNAGC 1 cut(s) 477
Bme1390I CCNGG 3 cut(s) 108, 133, 504
BmgT120I GGNCC 3 cut(s) 560, 644, 674
BmiI GGNNCC 1 cut(s) 486
BmrFI CCNGG 3 cut(s) 108, 133, 504
BmrI ACTGGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 477
Bsa29I ATCGAT 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 502
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 346
BseBI CCWGG 3 cut(s) 108, 133, 504
BseCI ATCGAT 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 502
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 468, 741
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 2 cut(s) 338, 506
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 3 cut(s) 562, 646, 676
BshVI ATCGAT 1 cut(s) 55
BsiEI CGRYCG 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 261
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 484
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 3 cut(s) 562, 646, 676
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 3 cut(s) 52, 85, 727
Bsp1720I GCTNAGC 1 cut(s) 477
BspANI GGCC 3 cut(s) 562, 646, 676
BspCNI CTCAG 2 cut(s) 469, 742
BspDI ATCGAT 1 cut(s) 55
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 1 cut(s) 486
BspPI GGATC 1 cut(s) 722
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 3 cut(s) 52, 85, 727
Bst2UI CCWGG 3 cut(s) 108, 133, 504
BstC8I GCNNGC 2 cut(s) 249, 513
BstDEI CTNAG 5 cut(s) 20, 477, 662, 678, 750
BstF5I GGATG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 838
BstHHI GCGC 1 cut(s) 837
BstKTI GATC 3 cut(s) 55, 88, 730
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 3 cut(s) 52, 85, 727
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 568
BstNI CCWGG 3 cut(s) 108, 133, 504
BstSCI CCNGG 3 cut(s) 106, 131, 502
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 727
BstYI RGATCY 1 cut(s) 727
Bsu15I ATCGAT 1 cut(s) 55
BsuRI GGCC 3 cut(s) 562, 646, 676
BsuTUI ATCGAT 1 cut(s) 55
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 2 cut(s) 249, 513
CciI TCATGA 1 cut(s) 594
CfoI GCGC 1 cut(s) 837
Cfr13I GGNCC 3 cut(s) 560, 644, 674
ClaI ATCGAT 1 cut(s) 55
CsiI ACCWGGT 1 cut(s) 106
Csp6I GTAC 1 cut(s) 806
CviAII CATG 1 cut(s) 595
CviJI RGCY 8 cut(s) 131, 383, 476, 515, 562, 646, 661, 676
CviKI_1 RGCY 8 cut(s) 131, 383, 476, 515, 562, 646, 661, 676
CviQI GTAC 1 cut(s) 806
DdeI CTNAG 5 cut(s) 20, 477, 662, 678, 750
DpnI GATC 3 cut(s) 54, 87, 729
DpnII GATC 3 cut(s) 52, 85, 727
Eco47III AGCGCT 1 cut(s) 836
Eco57I CTGAAG 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 674
EcoRII CCWGG 3 cut(s) 106, 131, 502
FaeI CATG 1 cut(s) 598
FaqI GGGAC 1 cut(s) 484
FatI CATG 1 cut(s) 594
FokI GGATG 1 cut(s) 215
FspBI CTAG 4 cut(s) 516, 779, 786, 813
GlaI GCGC 1 cut(s) 836
HaeII RGCGCY 1 cut(s) 838
HaeIII GGCC 3 cut(s) 562, 646, 676
HhaI GCGC 1 cut(s) 837
Hin1II CATG 1 cut(s) 598
Hin6I GCGC 1 cut(s) 835
HinP1I GCGC 1 cut(s) 835
HinfI GANTC 1 cut(s) 211
HphI GGTGA 2 cut(s) 122, 738
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 3 cut(s) 265, 453, 463
Hpy188III TCNNGA 5 cut(s) 50, 218, 312, 595, 813
Hpy8I GTNNAC 1 cut(s) 339
Hpy99I CGWCG 1 cut(s) 323
HpyCH4IV ACGT 2 cut(s) 440, 582
HpyCH4V TGCA 3 cut(s) 527, 656, 694
HpyF10VI GCNNNNNNNGC 1 cut(s) 568
HpyF3I CTNAG 5 cut(s) 20, 477, 662, 678, 750
HpySE526I ACGT 2 cut(s) 440, 582
Hsp92II CATG 1 cut(s) 598
HspAI GCGC 1 cut(s) 835
Kzo9I GATC 3 cut(s) 52, 85, 727
LmnI GCTCC 2 cut(s) 256, 620
LweI GCATC 1 cut(s) 265
MabI ACCWGGT 1 cut(s) 106
MaeI CTAG 4 cut(s) 516, 779, 786, 813
MaeII ACGT 2 cut(s) 440, 582
MaeIII GTNAC 3 cut(s) 110, 188, 599
MalI GATC 3 cut(s) 54, 87, 729
MboI GATC 3 cut(s) 52, 85, 727
MboII GAAGA 6 cut(s) 148, 164, 191, 362, 446, 565
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 5 cut(s) 119, 456, 464, 522, 733
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 5 cut(s) 316, 484, 583, 665, 813
MseI TTAA 1 cut(s) 579
MspR9I CCNGG 3 cut(s) 108, 133, 504
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 3 cut(s) 108, 133, 504
MwoI GCNNNNNNNGC 1 cut(s) 568
NdeII GATC 3 cut(s) 52, 85, 727
NlaIII CATG 1 cut(s) 598
NlaIV GGNNCC 1 cut(s) 486
NmuCI GTSAC 3 cut(s) 110, 188, 599
PagI TCATGA 1 cut(s) 594
PctI GAATGC 1 cut(s) 541
Ple19I CGATCG 1 cut(s) 55
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
PsiI TTATAA 1 cut(s) 738
Psp6I CCWGG 3 cut(s) 106, 131, 502
PspGI CCWGG 3 cut(s) 106, 131, 502
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 3 cut(s) 560, 644, 674
PsuI RGATCY 1 cut(s) 727
PvuI CGATCG 1 cut(s) 55
RsaI GTAC 1 cut(s) 807
RsaNI GTAC 1 cut(s) 806
SaqAI TTAA 1 cut(s) 579
Sau3AI GATC 3 cut(s) 52, 85, 727
Sau96I GGNCC 3 cut(s) 560, 644, 674
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 3 cut(s) 108, 133, 504
SduI GDGCHC 1 cut(s) 261
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 1 cut(s) 265
SpeI ACTAGT 1 cut(s) 778
Sse9I AATT 5 cut(s) 119, 456, 464, 522, 733
SspMI CTAG 4 cut(s) 516, 779, 786, 813
StyD4I CCNGG 3 cut(s) 106, 131, 502
TaiI ACGT 2 cut(s) 443, 585
TaqI TCGA 1 cut(s) 55
TasI AATT 5 cut(s) 119, 456, 464, 522, 733
TatI WGTACW 1 cut(s) 805
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TseFI GTSAC 3 cut(s) 110, 188, 599
Tsp45I GTSAC 3 cut(s) 110, 188, 599
TspDTI ATGAA 4 cut(s) 165, 210, 219, 408
TspGWI ACGGA 1 cut(s) 832
XapI RAATTY 1 cut(s) 119
XbaI TCTAGA 1 cut(s) 812
XspI CTAG 4 cut(s) 516, 779, 786, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.