Rh3CG335400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0011470
Physical Location & Seq
Reverse (-)
37373899 .. 37376429
2531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG335400.1

Sequence Viewer

Length: 1044 bp
ATGGCTCGGAGGCTCCGTTCCTTTATTTCCCTCAATTCTTGTCTTTGCAAACTCCCAAAGCCCCAAATGCAGCCTTCACTGCTGCTTCCAAGGTCACTCTGGGTCTTTTCCAATTATAGATTGTCGTTGCTTAATCCTTTTAACTTCTCCAGTAACTGTTTCTCTGTTTCCTCTTTCAGATTAGAATACCCATCTCATTCTGCTTTAAGAACTTCAACAGGTCGCTGTGGGTTATCTCCAAGTTTTCAAGCTTCACGATCATATGCTCGTGGTGATCATAAGTATTATGATCTTTTTGGCAATGGAAAGCCTGGTGACAAGGATTTCAGGAAAGCCTGGAAGAAAGAAATTAAGGAAGACGATTGTTTATGGACAGGTAGTGAAGATGAGAAAGATGATGGAAAGGATAAAAAGAGTAATCTGGAAGAAGAGATCCAAAAACTTAAACAGCAGGCAAGGGAGCACTCTGACCTGATTGATGCCGATGATAGTGATGAGTTGAGAAGTGTTTGGTCTGGAAGTGATGAGGAGAAGTCTCTGTGGACTGGTAGTGAAGGTGATGACGATGATGATATTCCTACTGAAGCCTACCCAAATGAAAGTAGTGACAAATACATAGATAAGCTGTTTGAATTTGAGGAAACATCAAAGTATCGGACAATCTCAGAATTATTAAAAGCAGAACAAGAACCAGAGGAGCTTTCACCCGGAAAGCAAGCCAGGAAAATTGCAGTTGAGAAGGCATTGAAAAAGTTGAAGAAAGGGCCAGACGGGAGATATGTTAATGTATGGGAAGTCATGAGTGACCTAGATATTCTAATAGGAGCATTTGAAAATATAGTTTCAGGACCAGAATATGCAGAGCTGAGGCATGGGGGGCCTAAGAAATTAAATATGCAGTTCTTCAAGGATATACAAGCGCGCATGAGAGATCCAAATTATAAGTTCTCGCCTGAGTTGAAGCTGAAACCGAAGAGCAAACTAGTTCCGAAAAAGAAATGGCAGAAGACACAGTCTAGGCGGAGGAAAGCACAAAAGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

40.12

Weight (kDa)

8.9

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17460 AT5G17460 AT5G17460 AT5G17460 AT5G17460
fragaria_vesca FvH4_1g30050
malus_domestica MD09G1260700.v1.1 MD09G1260800.v1.1
prunus_persica Prupe.3G152500_v2.0.a1
pyrus_communis pycom09g17520
rosa_chinensis RchiOBHm_Chr3g0492091
rosa_laevigata RLG00000022794
rosa_multiflora Rmu_sc0021983.1_g000002
rosa_roxburghii Rroxscaffold_6G00392540
rosa_rugosa Rorug03G0251900
rosa_samantha Rh3AG302000 Rh3BG337900 Rh3CG335400 Rh3DG337500
rosa_wichuraiana Rw3G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 942
AccII CGCG 1 cut(s) 922
AciI CCGC 1 cut(s) 1021
AclWI GGATC 2 cut(s) 427, 926
AcsI RAATTY 1 cut(s) 632
AcuI CTGAAG 1 cut(s) 603
AfeI AGCGCT 1 cut(s) 1040
AgsI TTSAA 8 cut(s) 216, 248, 632, 748, 757, 833, 907, 961
AhlI ACTAGT 1 cut(s) 982
AjnI CCWGG 3 cut(s) 310, 335, 719
AloI GAACNNNNNNTCC 1 cut(s) 33
AluBI AGCT 5 cut(s) 251, 625, 700, 865, 964
AluI AGCT 5 cut(s) 251, 625, 700, 865, 964
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 540
AlwI GGATC 2 cut(s) 427, 926
AlwNI CAGNNNCTG 1 cut(s) 156
Aor51HI AGCGCT 1 cut(s) 1040
AoxI GGCC 2 cut(s) 764, 878
ApeKI GCWGC 2 cut(s) 70, 82
ApoI RAATTY 1 cut(s) 632
AspLEI GCGC 3 cut(s) 922, 924, 1041
AspS9I GGNCC 3 cut(s) 764, 848, 878
AsuC2I CCSGG 1 cut(s) 708
AsuHPI GGTGA 4 cut(s) 284, 326, 569, 696
AvaII GGWCC 1 cut(s) 848
BauI CACGAG 1 cut(s) 267
BbsI GAAGAC 2 cut(s) 363, 1013
Bbv12I GWGCWC 1 cut(s) 465
BbvCI CCTCAGC 1 cut(s) 866
BbvI GCAGC 2 cut(s) 69, 82
BccI CCATC 2 cut(s) 199, 392
BciT130I CCWGG 3 cut(s) 312, 337, 721
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 708
BcoDI GTCTC 1 cut(s) 540
BcuI ACTAGT 1 cut(s) 982
BfaI CTAG 3 cut(s) 809, 983, 1017
BfoI RGCGCY 1 cut(s) 1042
BisI GCNGC 2 cut(s) 71, 83
BlsI GCNGC 2 cut(s) 72, 84
Bme1390I CCNGG 4 cut(s) 312, 337, 708, 721
Bme18I GGWCC 1 cut(s) 848
BmgT120I GGNCC 3 cut(s) 764, 848, 878
BmiI GGNNCC 2 cut(s) 14, 879
BmrFI CCNGG 4 cut(s) 312, 337, 708, 721
BmsI GCATC 1 cut(s) 469
BpiI GAAGAC 2 cut(s) 363, 1013
BpmI CTGGAG 1 cut(s) 133
Bpu10I CCTNAGC 1 cut(s) 866
BpuMI CCSGG 1 cut(s) 708
BsaJI CCNNGG 1 cut(s) 89
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bse1I ACTGG 2 cut(s) 150, 550
Bse3DI GCAATG 1 cut(s) 307
BseBI CCWGG 3 cut(s) 312, 337, 721
BseDI CCNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 3 cut(s) 678, 857, 945
BseNI ACTGG 2 cut(s) 150, 550
BsePI GCGCGC 1 cut(s) 920
BseRI GAGGAG 2 cut(s) 542, 710
BseXI GCAGC 2 cut(s) 69, 82
Bsh1236I CGCG 1 cut(s) 922
BshFI GGCC 2 cut(s) 766, 880
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 1 cut(s) 708
BsmAI GTCTC 1 cut(s) 540
BsnI GGCC 2 cut(s) 766, 880
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 5 cut(s) 257, 274, 289, 432, 931
BspACI CCGC 1 cut(s) 1021
BspANI GGCC 2 cut(s) 766, 880
BspCNI CTCAG 3 cut(s) 677, 858, 946
BspFNI CGCG 1 cut(s) 922
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 2 cut(s) 14, 879
BspPI GGATC 2 cut(s) 427, 926
BspQI GCTCTTC 1 cut(s) 968
BsrDI GCAATG 1 cut(s) 307
BsrI ACTGG 2 cut(s) 150, 550
BssECI CCNNGG 1 cut(s) 89
BssHII GCGCGC 1 cut(s) 920
BssMI GATC 5 cut(s) 257, 274, 289, 432, 931
BssSI CACGAG 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 89
Bst2BI CACGAG 1 cut(s) 267
Bst2UI CCWGG 3 cut(s) 312, 337, 721
Bst4CI ACNGT 2 cut(s) 158, 1014
Bst6I CTCTTC 2 cut(s) 423, 968
BstC8I GCNNGC 3 cut(s) 453, 717, 922
BstDEI CTNAG 4 cut(s) 664, 866, 882, 954
BstFNI CGCG 1 cut(s) 922
BstH2I RGCGCY 1 cut(s) 1042
BstHHI GCGC 3 cut(s) 922, 924, 1041
BstKTI GATC 5 cut(s) 260, 277, 292, 435, 934
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 5 cut(s) 257, 274, 289, 432, 931
BstMWI GCNNNNNNNGC 3 cut(s) 67, 79, 877
BstNI CCWGG 3 cut(s) 312, 337, 721
BstSCI CCNGG 4 cut(s) 310, 335, 706, 719
BstUI CGCG 1 cut(s) 922
BstV1I GCAGC 2 cut(s) 69, 82
BstV2I GAAGAC 2 cut(s) 363, 1013
BstX2I RGATCY 2 cut(s) 432, 931
BstYI RGATCY 2 cut(s) 432, 931
BsuRI GGCC 2 cut(s) 766, 880
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 3 cut(s) 453, 717, 922
CaiI CAGNNNCTG 1 cut(s) 156
CciI TCATGA 1 cut(s) 798
CfoI GCGC 3 cut(s) 922, 924, 1041
Cfr13I GGNCC 3 cut(s) 764, 848, 878
CviAII CATG 3 cut(s) 799, 872, 925
DdeI CTNAG 4 cut(s) 664, 866, 882, 954
DpnI GATC 5 cut(s) 259, 276, 291, 434, 933
DpnII GATC 5 cut(s) 257, 274, 289, 432, 931
Eam1104I CTCTTC 2 cut(s) 423, 968
EarI CTCTTC 2 cut(s) 423, 968
EciI GGCGGA 1 cut(s) 1036
Eco130I CCWWGG 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 848
Eco47III AGCGCT 1 cut(s) 1040
Eco57I CTGAAG 1 cut(s) 603
EcoO109I RGGNCCY 1 cut(s) 878
EcoRII CCWGG 3 cut(s) 310, 335, 719
EcoT14I CCWWGG 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 3 cut(s) 802, 875, 928
FatI CATG 3 cut(s) 798, 871, 924
FauNDI CATATG 1 cut(s) 262
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 71, 83
Fsp4HI GCNGC 2 cut(s) 71, 83
FspBI CTAG 3 cut(s) 809, 983, 1017
GlaI GCGC 3 cut(s) 921, 923, 1040
GluI GCNGC 2 cut(s) 71, 83
GsuI CTGGAG 1 cut(s) 133
HaeII RGCGCY 1 cut(s) 1042
HaeIII GGCC 2 cut(s) 766, 880
HapII CCGG 1 cut(s) 708
HhaI GCGC 3 cut(s) 922, 924, 1041
Hin1II CATG 3 cut(s) 802, 875, 928
Hin6I GCGC 3 cut(s) 920, 922, 1039
HinP1I GCGC 3 cut(s) 920, 922, 1039
HindIII AAGCTT 1 cut(s) 249
HpaII CCGG 1 cut(s) 708
HphI GGTGA 4 cut(s) 284, 326, 569, 696
Hpy166II GTNNAC 1 cut(s) 543
Hpy188I TCNGA 6 cut(s) 9, 179, 469, 657, 667, 990
Hpy188III TCNNGA 6 cut(s) 255, 328, 422, 516, 799, 846
Hpy8I GTNNAC 1 cut(s) 543
HpyAV CCTTC 3 cut(s) 84, 548, 733
HpyCH4III ACNGT 2 cut(s) 158, 1014
HpyCH4V TGCA 5 cut(s) 48, 70, 731, 860, 898
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 79, 877
HpyF3I CTNAG 4 cut(s) 664, 866, 882, 954
Hsp92II CATG 3 cut(s) 802, 875, 928
HspAI GCGC 3 cut(s) 920, 922, 1039
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 5 cut(s) 257, 274, 289, 432, 931
LguI GCTCTTC 1 cut(s) 968
LmnI GCTCC 4 cut(s) 18, 460, 697, 824
Lsp1109I GCAGC 2 cut(s) 69, 82
LweI GCATC 1 cut(s) 469
MaeI CTAG 3 cut(s) 809, 983, 1017
MaeIII GTNAC 5 cut(s) 93, 152, 314, 605, 803
MalI GATC 5 cut(s) 259, 276, 291, 434, 933
MboI GATC 5 cut(s) 257, 274, 289, 432, 931
MboII GAAGA 9 cut(s) 352, 368, 395, 437, 440, 769, 895, 985, 1018
MflI RGATCY 2 cut(s) 432, 931
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 8 cut(s) 34, 112, 348, 632, 668, 726, 887, 937
MnlI CCTC 8 cut(s) 3, 41, 181, 520, 631, 688, 861, 1017
MseI TTAA 8 cut(s) 132, 141, 206, 351, 444, 674, 783, 890
MspI CCGG 1 cut(s) 708
MspR9I CCNGG 4 cut(s) 312, 337, 708, 721
MvaI CCWGG 3 cut(s) 312, 337, 721
MvnI CGCG 1 cut(s) 922
MwoI GCNNNNNNNGC 3 cut(s) 67, 79, 877
NciI CCSGG 1 cut(s) 708
NdeI CATATG 1 cut(s) 262
NdeII GATC 5 cut(s) 257, 274, 289, 432, 931
NlaIII CATG 3 cut(s) 802, 875, 928
NlaIV GGNNCC 2 cut(s) 14, 879
NmuCI GTSAC 4 cut(s) 93, 314, 605, 803
PagI TCATGA 1 cut(s) 798
PauI GCGCGC 1 cut(s) 920
PciSI GCTCTTC 1 cut(s) 968
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PflFI GACNNNGTC 1 cut(s) 1012
PkrI GCNGC 2 cut(s) 72, 84
PsiI TTATAA 1 cut(s) 942
Psp6I CCWGG 3 cut(s) 310, 335, 719
PspGI CCWGG 3 cut(s) 310, 335, 719
PspN4I GGNNCC 2 cut(s) 14, 879
PspPI GGNCC 3 cut(s) 764, 848, 878
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 2 cut(s) 432, 931
PsyI GACNNNGTC 1 cut(s) 1012
PteI GCGCGC 1 cut(s) 920
SapI GCTCTTC 1 cut(s) 968
SaqAI TTAA 8 cut(s) 132, 141, 206, 351, 444, 674, 783, 890
SatI GCNGC 2 cut(s) 71, 83
Sau3AI GATC 5 cut(s) 257, 274, 289, 432, 931
Sau96I GGNCC 3 cut(s) 764, 848, 878
ScrFI CCNGG 4 cut(s) 312, 337, 708, 721
SduI GDGCHC 1 cut(s) 465
SfaNI GCATC 1 cut(s) 469
SinI GGWCC 1 cut(s) 848
SpeI ACTAGT 1 cut(s) 982
Sse9I AATT 8 cut(s) 34, 112, 348, 632, 668, 726, 887, 937
SsiI CCGC 1 cut(s) 1021
SspMI CTAG 3 cut(s) 809, 983, 1017
StyD4I CCNGG 4 cut(s) 310, 335, 706, 719
StyI CCWWGG 1 cut(s) 89
TaaI ACNGT 2 cut(s) 158, 1014
TasI AATT 8 cut(s) 34, 112, 348, 632, 668, 726, 887, 937
Tru1I TTAA 8 cut(s) 132, 141, 206, 351, 444, 674, 783, 890
Tru9I TTAA 8 cut(s) 132, 141, 206, 351, 444, 674, 783, 890
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 4 cut(s) 93, 314, 605, 803
TseI GCWGC 2 cut(s) 70, 82
Tsp45I GTSAC 4 cut(s) 93, 314, 605, 803
TspDTI ATGAA 1 cut(s) 612
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 1 cut(s) 84
Tth111I GACNNNGTC 1 cut(s) 1012
VpaK11BI GGWCC 1 cut(s) 848
XapI RAATTY 1 cut(s) 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 96
XspI CTAG 3 cut(s) 809, 983, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.