Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Reverse (-)

6268644 .. 6271325

Gene Structure 2682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCTAGAGCGAGAAGCCGGAGCAGAAGCTATAGTCCCCGTCCTCGTGACAGGTCACCACCTCGCGAACGGAAAGGCTACGACGATAATCGCCTCCGCGAACGTCCGTCTTCTCGTGATCACGAATCCTCTGGTCCTTCTGGTTTGCTTATCCGTAATCTCCCTCTCGATGCTAGGCCGAACGATCTTAGGGATTCGTTTGAACGGTTTGGTCCACTCAAGGACATATACCTGCCTAGGAATTATTATACTGGGGAGCCGAGAGGGTTTGGATTTGTTAAGTATCGTTATGCTGAAGATGCAGCTGAGGCAATGAAACGAATGAATCACAAAGTTATTGGTGGGCGTGAGATAGCCATTGTTTTCGCTGAGGAGAACCGGAAAACTCCACAAGAAATGCGTACTACTAACGGTACAAGTGGTCGACACGGGGACTACAAGAGGACTTCACACAGATCACCAAGGCGCAGATATCGTTCTCATTCACGTTCGCGTTCGCCTCCAAGGCGAGAGTCAAGGCATAGTAAAGTAAGAGAGGATGATTTGTACTCTCCTCGAAGAAGGTCAAGATCTATTTCACGTTCTCCTTTGCCTCGAAATGAGAGGGAATACAAGTCTAGAAACTGTAGAAGTCCTAGAGAGGAGAGGGTGCTTACTCCAATCAGGTCTCGATGTCTGTCAAGGTCCCGTTCTCGATCCTTAAGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

236

Amino Acids

28.03

Weight (kDa)

11.44

Isoelectric Point (pI)

97.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	49 - 118	3.9e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	424
AccII	CGCG	3 cut(s)	66, 99, 493
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	690
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	3 cut(s)	403, 415, 548
AflII	CTTAAG	1 cut(s)	700
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	2 cut(s)	30, 305
AluI	AGCT	2 cut(s)	30, 305
Alw26I	GTCTC	1 cut(s)	672
AlwI	GGATC	1 cut(s)	690
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	302
AspA2I	CCTAGG	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	468
AspS9I	GGNCC	3 cut(s)	134, 212, 684
AsuHPI	GGTGA	2 cut(s)	48, 450
AvaII	GGWCC	3 cut(s)	134, 212, 684
AvrII	CCTAGG	1 cut(s)	236
BauI	CACGAG	2 cut(s)	45, 114
BbsI	GAAGAC	1 cut(s)	102
BbvCI	CCTCAGC	2 cut(s)	306, 369
BbvI	GCAGC	1 cut(s)	314
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	672
BfaI	CTAG	5 cut(s)	6, 174, 237, 618, 636
BfmI	CTRYAG	2 cut(s)	31, 625
BfrI	CTTAAG	1 cut(s)	700
BfuAI	ACCTGC	1 cut(s)	240
BglI	GCCNNNNNGGC	1 cut(s)	505
BglII	AGATCT	1 cut(s)	569
BisI	GCNGC	1 cut(s)	303
BlnI	CCTAGG	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	304
Bme18I	GGWCC	3 cut(s)	134, 212, 684
BmgT120I	GGNCC	3 cut(s)	134, 212, 684
BmiI	GGNNCC	2 cut(s)	258, 686
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	160, 289
BmuI	ACTGGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	102
Bpu10I	CCTNAGC	2 cut(s)	306, 369
BpuEI	CTTGAG	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	672
BsaJI	CCNNGG	3 cut(s)	236, 461, 503
BsaWI	WCCGGW	1 cut(s)	378
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	236, 461, 503
BseGI	GGATG	1 cut(s)	544
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	2 cut(s)	297, 360
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	3 cut(s)	386, 543, 656
BseXI	GCAGC	1 cut(s)	314
Bsh1236I	CGCG	3 cut(s)	66, 99, 493
BshFI	GGCC	1 cut(s)	178
BsiSI	CCGG	2 cut(s)	19, 379
BslFI	GGGAC	3 cut(s)	21, 446, 670
BsmAI	GTCTC	1 cut(s)	672
BsmFI	GGGAC	3 cut(s)	21, 446, 670
BsnI	GGCC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	672
Bsp143I	GATC	5 cut(s)	118, 184, 455, 569, 695
Bsp68I	TCGCGA	1 cut(s)	66
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	2 cut(s)	298, 361
BspFNI	CGCG	3 cut(s)	66, 99, 493
BspLI	GGNNCC	2 cut(s)	258, 686
BspMI	ACCTGC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	690
BspTI	CTTAAG	1 cut(s)	700
BspTNI	GGTCTC	1 cut(s)	672
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	3 cut(s)	236, 461, 503
BssMI	GATC	5 cut(s)	118, 184, 455, 569, 695
BssSI	CACGAG	2 cut(s)	45, 114
BssT1I	CCWWGG	3 cut(s)	236, 461, 503
Bst2BI	CACGAG	2 cut(s)	45, 114
Bst4CI	ACNGT	3 cut(s)	207, 413, 626
BstAFI	CTTAAG	1 cut(s)	700
BstDEI	CTNAG	3 cut(s)	188, 306, 369
BstEII	GGTNACC	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	544
BstFNI	CGCG	3 cut(s)	66, 99, 493
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	5 cut(s)	121, 187, 458, 572, 698
BstMAI	GTCTC	1 cut(s)	672
BstMBI	GATC	5 cut(s)	118, 184, 455, 569, 695
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 308, 505
BstPI	GGTNACC	1 cut(s)	54
BstSFI	CTRYAG	2 cut(s)	31, 625
BstUI	CGCG	3 cut(s)	66, 99, 493
BstV1I	GCAGC	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	544
BtuMI	TCGCGA	1 cut(s)	66
BveI	ACCTGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	468
Cfr13I	GGNCC	3 cut(s)	134, 212, 684
Csp6I	GTAC	3 cut(s)	402, 414, 547
CviJI	RGCY	8 cut(s)	5, 18, 30, 78, 178, 259, 305, 356
CviKI_1	RGCY	8 cut(s)	5, 18, 30, 78, 178, 259, 305, 356
CviQI	GTAC	3 cut(s)	402, 414, 547
DdeI	CTNAG	3 cut(s)	188, 306, 369
DpnI	GATC	5 cut(s)	120, 186, 457, 571, 697
DpnII	GATC	5 cut(s)	118, 184, 455, 569, 695
Eco130I	CCWWGG	3 cut(s)	236, 461, 503
Eco31I	GGTCTC	1 cut(s)	672
Eco32I	GATATC	1 cut(s)	473
Eco47I	GGWCC	3 cut(s)	134, 212, 684
Eco57I	CTGAAG	1 cut(s)	315
Eco91I	GGTNACC	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	684
EcoO65I	GGTNACC	1 cut(s)	54
EcoRV	GATATC	1 cut(s)	473
EcoT14I	CCWWGG	3 cut(s)	236, 461, 503
ErhI	CCWWGG	3 cut(s)	236, 461, 503
FaiI	YATR	6 cut(s)	33, 227, 229, 249, 291, 522
FaqI	GGGAC	3 cut(s)	21, 446, 670
FbaI	TGATCA	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	551
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	5 cut(s)	6, 174, 237, 618, 636
GlaI	GCGC	1 cut(s)	467
GluI	GCNGC	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	2 cut(s)	19, 379
HhaI	GCGC	1 cut(s)	468
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HincII	GTYRAC	1 cut(s)	425
HindII	GTYRAC	1 cut(s)	425
HinfI	GANTC	4 cut(s)	125, 194, 325, 512
HpaII	CCGG	2 cut(s)	19, 379
HphI	GGTGA	2 cut(s)	48, 450
Hpy166II	GTNNAC	2 cut(s)	215, 425
Hpy188III	TCNNGA	9 cut(s)	47, 65, 116, 122, 167, 567, 618, 669, 693
Hpy8I	GTNNAC	2 cut(s)	215, 425
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	147, 555
HpyCH4III	ACNGT	3 cut(s)	207, 413, 626
HpyCH4IV	ACGT	3 cut(s)	103, 487, 580
HpyCH4V	TGCA	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 308, 505
HpyF3I	CTNAG	3 cut(s)	188, 306, 369
HpySE526I	ACGT	3 cut(s)	103, 487, 580
HspAI	GCGC	1 cut(s)	466
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	5 cut(s)	118, 184, 455, 569, 695
LmnI	GCTCC	2 cut(s)	21, 256
LpnPI	CCDG	8 cut(s)	32, 37, 117, 126, 237, 245, 392, 649
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	2 cut(s)	160, 289
MaeI	CTAG	5 cut(s)	6, 174, 237, 618, 636
MaeII	ACGT	3 cut(s)	103, 487, 580
MaeIII	GTNAC	2 cut(s)	47, 54
MalI	GATC	5 cut(s)	120, 186, 457, 571, 697
MboI	GATC	5 cut(s)	118, 184, 455, 569, 695
MboII	GAAGA	3 cut(s)	102, 308, 570
MflI	RGATCY	1 cut(s)	569
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	521
MseI	TTAA	2 cut(s)	279, 701
MspA1I	CMGCKG	1 cut(s)	305
MspCI	CTTAAG	1 cut(s)	700
MspI	CCGG	2 cut(s)	19, 379
MvnI	CGCG	3 cut(s)	66, 99, 493
MwoI	GCNNNNNNNGC	3 cut(s)	299, 308, 505
NdeII	GATC	5 cut(s)	118, 184, 455, 569, 695
NlaIV	GGNNCC	2 cut(s)	258, 686
NmeAIII	GCCGAG	1 cut(s)	285
NmuCI	GTSAC	2 cut(s)	47, 54
NruI	TCGCGA	1 cut(s)	66
PfeI	GAWTC	3 cut(s)	125, 194, 325
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PpuMI	RGGWCCY	1 cut(s)	684
Psp5II	RGGWCCY	1 cut(s)	684
PspEI	GGTNACC	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	258, 686
PspPI	GGNCC	3 cut(s)	134, 212, 684
PspPPI	RGGWCCY	1 cut(s)	684
PsuI	RGATCY	1 cut(s)	569
PvuII	CAGCTG	1 cut(s)	305
RruI	TCGCGA	1 cut(s)	66
RsaI	GTAC	3 cut(s)	403, 415, 548
RsaNI	GTAC	3 cut(s)	402, 414, 547
SalI	GTCGAC	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	279, 701
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	5 cut(s)	118, 184, 455, 569, 695
Sau96I	GGNCC	3 cut(s)	134, 212, 684
SchI	GAGTC	1 cut(s)	521
SfaNI	GCATC	2 cut(s)	160, 289
SfcI	CTRYAG	2 cut(s)	31, 625
SinI	GGWCC	3 cut(s)	134, 212, 684
SmlI	CTYRAG	2 cut(s)	218, 700
SmoI	CTYRAG	2 cut(s)	218, 700
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	5 cut(s)	6, 174, 237, 618, 636
StyI	CCWWGG	3 cut(s)	236, 461, 503
TaaI	ACNGT	3 cut(s)	207, 413, 626
TaiI	ACGT	3 cut(s)	106, 490, 583
TaqI	TCGA	6 cut(s)	168, 424, 556, 595, 670, 694
TasI	AATT	1 cut(s)	241
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	3 cut(s)	125, 194, 325
Tru1I	TTAA	2 cut(s)	279, 701
Tru9I	TTAA	2 cut(s)	279, 701
TseFI	GTSAC	2 cut(s)	47, 54
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	2 cut(s)	47, 54
TspDTI	ATGAA	2 cut(s)	329, 338
TspGWI	ACGGA	3 cut(s)	85, 96, 143
Vha464I	CTTAAG	1 cut(s)	700
VpaK11BI	GGWCC	3 cut(s)	134, 212, 684
XbaI	TCTAGA	1 cut(s)	617
XmaJI	CCTAGG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	424
XspI	CTAG	5 cut(s)	6, 174, 237, 618, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.