Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Reverse (-)

28829885 .. 28830740

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0164400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCTCCTCGTTGTTCAGCTGCTGCCACAGCTGGAATGCGCAGCCGTCGTATCGGTGGAGGCGGCAACTCCAGCTCCGGAGGCATGGACGGCAGCGGCGGTGGCTCTAGTGCCGGAAACAACATACTCAGGTTCTACACTGACGACGCTCCTGGCTTGAAGATCTCCCCCACCGTCATGCTCGTCATGAGCCTCTGCTTCATCGGCTTTATCACTGCCCTCCACGTCTTCGGCAAGCTCTACCTCCACCGATCCACCGGCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

89

Amino Acids

8.97

Weight (kDa)

10.04

Isoelectric Point (pI)

62.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	39 - 78	2.9e-16	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	4 cut(s)	63, 96, 99, 261
AclWI	GGATC	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	160
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	5 cut(s)	20, 32, 75, 238, 266
AluI	AGCT	5 cut(s)	20, 32, 75, 238, 266
AlwI	GGATC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	23
Aor13HI	TCCGGA	1 cut(s)	77
ApeKI	GCWGC	4 cut(s)	20, 23, 42, 93
AspLEI	GCGC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	220
BbvI	GCAGC	4 cut(s)	7, 10, 54, 105
BceAI	ACGGC	2 cut(s)	30, 106
BciT130I	CCWGG	1 cut(s)	153
BfaI	CTAG	1 cut(s)	108
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	6 cut(s)	21, 24, 43, 64, 94, 97
BlsI	GCNGC	6 cut(s)	22, 25, 44, 65, 95, 98
Bme1390I	CCNGG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bse118I	RCCGGY	1 cut(s)	257
BseAI	TCCGGA	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	142
BseXI	GCAGC	4 cut(s)	7, 10, 54, 105
BsiSI	CCGG	3 cut(s)	78, 114, 258
BsmI	GAATGC	1 cut(s)	42
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	162, 251
BspACI	CCGC	4 cut(s)	63, 96, 99, 261
BspCNI	CTCAG	1 cut(s)	141
BspEI	TCCGGA	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssMI	GATC	2 cut(s)	162, 251
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	2 cut(s)	165, 254
BstMBI	GATC	2 cut(s)	162, 251
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 72, 81, 90, 102, 204
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	4 cut(s)	7, 10, 54, 105
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	138, 213
Cac8I	GCNNGC	1 cut(s)	236
CaiI	CAGNNNCTG	1 cut(s)	23
CciI	TCATGA	1 cut(s)	186
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	257
CseI	GACGC	1 cut(s)	155
CviAII	CATG	3 cut(s)	85, 178, 187
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	164, 253
DpnII	GATC	2 cut(s)	162, 251
EcoRII	CCWGG	1 cut(s)	151
FaeI	CATG	3 cut(s)	88, 181, 190
FaiI	YATR	4 cut(s)	86, 125, 179, 188
FatI	CATG	3 cut(s)	84, 177, 186
Fnu4HI	GCNGC	6 cut(s)	21, 24, 43, 64, 94, 97
Fsp4HI	GCNGC	6 cut(s)	21, 24, 43, 64, 94, 97
FspBI	CTAG	1 cut(s)	108
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	6 cut(s)	21, 24, 43, 64, 94, 97
GsuI	CTGGAG	1 cut(s)	55
HapII	CCGG	3 cut(s)	78, 114, 258
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	88, 181, 190
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HpaII	CCGG	3 cut(s)	78, 114, 258
Hpy188III	TCNNGA	2 cut(s)	78, 187
Hpy99I	CGWCG	2 cut(s)	51, 149
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 72, 81, 90, 102, 204
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	88, 181, 190
HspAI	GCGC	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	77
Kzo9I	GATC	2 cut(s)	162, 251
LmnI	GCTCC	4 cut(s)	10, 80, 154, 263
LpnPI	CCDG	7 cut(s)	18, 85, 91, 115, 127, 138, 165
Lsp1109I	GCAGC	4 cut(s)	7, 10, 54, 105
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	225
MalI	GATC	2 cut(s)	164, 253
MboI	GATC	2 cut(s)	162, 251
MboII	GAAGA	2 cut(s)	172, 220
MflI	RGATCY	1 cut(s)	162
MnlI	CCTC	6 cut(s)	18, 53, 74, 203, 230, 254
MroI	TCCGGA	1 cut(s)	77
MseI	TTAA	1 cut(s)	268
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	3 cut(s)	20, 32, 96
MspI	CCGG	3 cut(s)	78, 114, 258
MspR9I	CCNGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	6 cut(s)	29, 72, 81, 90, 102, 204
NdeII	GATC	2 cut(s)	162, 251
NlaIII	CATG	3 cut(s)	88, 181, 190
NlaIV	GGNNCC	1 cut(s)	6
NsbI	TGCGCA	1 cut(s)	41
PagI	TCATGA	1 cut(s)	186
PctI	GAATGC	1 cut(s)	42
PkrI	GCNGC	6 cut(s)	22, 25, 44, 65, 95, 98
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	162
PvuII	CAGCTG	2 cut(s)	20, 32
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	268
SatI	GCNGC	6 cut(s)	21, 24, 43, 64, 94, 97
Sau3AI	GATC	2 cut(s)	162, 251
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	8 cut(s)	22, 34, 77, 134, 228, 240, 246, 268
SgrAI	CRCCGGYG	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	176
SsiI	CCGC	4 cut(s)	63, 96, 99, 261
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	228
TauI	GCSGC	2 cut(s)	66, 99
Tru1I	TTAA	1 cut(s)	268
Tru9I	TTAA	1 cut(s)	268
TscAI	CASTG	2 cut(s)	145, 220
TseI	GCWGC	4 cut(s)	20, 23, 42, 93
TspDTI	ATGAA	1 cut(s)	190
TspRI	CASTG	2 cut(s)	145, 220
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.