Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Reverse (-)

11338917 .. 11343220

Gene Structure 4304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G144400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCAGGTACAGAAGCCGAAGCCGAAGCTACAGCCCTCGTCGACGCAGCCGGACTCCGCCACGTGGACGCAAGCGATACGACGACGACCCTCGTGATCGCTACCGTGAAAGCAGGTCTTACAGAGACCGTCGCTCACCCGCTCCTTCTGGCCTGCTCGTTCGAAATCTTCCTCTTGACGCCAGGCCAGAAGATCTTAGGATCCCATTTGAGCGATATGGCCCAGTGAAGGATGTGTATCTTCCTAAGAATTACTACACCGGGGAGCCACGGGGCTTTGGGTTTGTGAAGTACCGTTATGCGGAGGATGCGGCTGAAGCAAAGCAACAACTGAACCATTCAGTTATTGGTGGACGTGAGATAAGAATTGTGTTTGCTGAGGAGAATAGAAAAACTCCCCAAGAAATGCGTACAACTACTCGCGTAAGTGGTCGGTATGGAGGAAGCTCCAGAAGGAGAACTCCACCGAGGTCCCCAAGACGGCAATATCGTTCTTACTCGCGGTCACCTTCACCTGTTAGGCGTGACTCAAGGGACCGTGGGGCTAGGGATGATTATCGTTCGCCAGTGCAATCTAGATCAATTTCACGATCTCCTTCACCACGTGATGGAAGAGACTACAGGAGGTCCCCAAGTCCACGCGAGAATGGTCGGAGTCCTCGTGATGAAAGAGACTATGCACCCAGCAGATCAAGGAGTCTGAGGGGTAACAGTCGCAGTCCATCAAGGTCTCGTTCGCGATCCTACAGTCCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

253

Amino Acids

29.8

Weight (kDa)

11.49

Isoelectric Point (pI)

115.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	105
AccB7I	CCANNNNNTGG	1 cut(s)	608
AccBSI	CCGCTC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	43
AccII	CGCG	4 cut(s)	423, 502, 642, 739
AciI	CCGC	5 cut(s)	59, 141, 302, 311, 502
AclWI	GGATC	3 cut(s)	196, 209, 735
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	336
AcvI	CACGTG	2 cut(s)	65, 605
AcyI	GRCGYC	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	3 cut(s)	11, 293, 412
AfiI	CCNNNNNNNGG	5 cut(s)	65, 229, 301, 480, 608
AjiI	CACGTC	1 cut(s)	356
AjnI	CCWGG	2 cut(s)	5, 182
AluBI	AGCT	2 cut(s)	30, 447
AluI	AGCT	2 cut(s)	30, 447
Alw26I	GTCTC	4 cut(s)	120, 609, 666, 735
AlwI	GGATC	3 cut(s)	196, 209, 735
AoxI	GGCC	4 cut(s)	3, 151, 185, 220
ApeKI	GCWGC	1 cut(s)	48
AspS9I	GGNCC	4 cut(s)	221, 471, 535, 627
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	4 cut(s)	129, 498, 504, 591
AsuII	TTCGAA	1 cut(s)	163
AvaII	GGWCC	3 cut(s)	471, 535, 627
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	201
BauI	CACGAG	2 cut(s)	93, 660
BbrPI	CACGTG	2 cut(s)	65, 605
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	2 cut(s)	602, 730
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	2 cut(s)	7, 184
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	4 cut(s)	120, 609, 666, 735
BfaI	CTAG	2 cut(s)	546, 576
BfmI	CTRYAG	3 cut(s)	31, 619, 745
BfuAI	ACCTGC	1 cut(s)	105
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	2 cut(s)	49, 312
BlsI	GCNGC	2 cut(s)	50, 313
Bme1390I	CCNGG	3 cut(s)	7, 184, 262
Bme18I	GGWCC	3 cut(s)	471, 535, 627
BmgBI	CACGTC	1 cut(s)	356
BmgT120I	GGNCC	4 cut(s)	221, 471, 535, 627
BmiI	GGNNCC	5 cut(s)	203, 267, 473, 536, 629
BmrFI	CCNGG	3 cut(s)	7, 184, 262
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	262
BsaAI	YACGTR	2 cut(s)	65, 605
BsaBI	GATNNNNATC	2 cut(s)	237, 555
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	2 cut(s)	120, 735
BsaJI	CCNNGG	4 cut(s)	261, 269, 467, 538
BsaXI	ACNNNNNCTCC	2 cut(s)	646, 676
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 229, 301, 480, 608
Bse1I	ACTGG	2 cut(s)	224, 566
Bse8I	GATNNNNATC	2 cut(s)	237, 555
BseBI	CCWGG	2 cut(s)	7, 184
BseDI	CCNNGG	4 cut(s)	261, 269, 467, 538
BseGI	GGATG	3 cut(s)	238, 313, 556
BseJI	GATNNNNATC	2 cut(s)	237, 555
BseLI	CCNNNNNNNGG	5 cut(s)	65, 229, 301, 480, 608
BseMII	CTCAG	2 cut(s)	369, 692
BseNI	ACTGG	2 cut(s)	224, 566
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	60
BseYI	CCCAGC	1 cut(s)	683
Bsh1236I	CGCG	4 cut(s)	423, 502, 642, 739
BshFI	GGCC	4 cut(s)	5, 153, 187, 222
BsiSI	CCGG	2 cut(s)	52, 261
BslFI	GGGAC	3 cut(s)	457, 548, 613
BslI	CCNNNNNNNGG	5 cut(s)	65, 229, 301, 480, 608
BsmAI	GTCTC	4 cut(s)	120, 609, 666, 735
BsmFI	GGGAC	3 cut(s)	457, 548, 613
BsnI	GGCC	4 cut(s)	5, 153, 187, 222
Bso31I	GGTCTC	2 cut(s)	120, 735
Bsp119I	TTCGAA	1 cut(s)	163
Bsp143I	GATC	7 cut(s)	97, 193, 201, 578, 590, 689, 740
Bsp68I	TCGCGA	1 cut(s)	739
BspACI	CCGC	5 cut(s)	59, 141, 302, 311, 502
BspANI	GGCC	4 cut(s)	5, 153, 187, 222
BspCNI	CTCAG	2 cut(s)	370, 693
BspFNI	CGCG	4 cut(s)	423, 502, 642, 739
BspLI	GGNNCC	5 cut(s)	203, 267, 473, 536, 629
BspMI	ACCTGC	1 cut(s)	105
BspPI	GGATC	3 cut(s)	196, 209, 735
BspT104I	TTCGAA	1 cut(s)	163
BspTNI	GGTCTC	2 cut(s)	120, 735
BsrBI	CCGCTC	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	224, 566
BssECI	CCNNGG	4 cut(s)	261, 269, 467, 538
BssMI	GATC	7 cut(s)	97, 193, 201, 578, 590, 689, 740
BssNI	GRCGYC	1 cut(s)	180
BssSI	CACGAG	2 cut(s)	93, 660
Bst2BI	CACGAG	2 cut(s)	93, 660
Bst2UI	CCWGG	2 cut(s)	7, 184
Bst4CI	ACNGT	6 cut(s)	107, 131, 296, 539, 713, 749
Bst6I	CTCTTC	1 cut(s)	607
BstACI	GRCGYC	1 cut(s)	180
BstBAI	YACGTR	2 cut(s)	65, 605
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	74, 155
BstDEI	CTNAG	4 cut(s)	197, 246, 378, 701
BstDSI	CCRYGG	2 cut(s)	269, 538
BstEII	GGTNACC	1 cut(s)	504
BstF5I	GGATG	3 cut(s)	238, 313, 556
BstFNI	CGCG	4 cut(s)	423, 502, 642, 739
BstKTI	GATC	7 cut(s)	100, 196, 204, 581, 593, 692, 743
BstMAI	GTCTC	4 cut(s)	120, 609, 666, 735
BstMBI	GATC	7 cut(s)	97, 193, 201, 578, 590, 689, 740
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 317
BstNI	CCWGG	2 cut(s)	7, 184
BstPI	GGTNACC	1 cut(s)	504
BstSCI	CCNGG	3 cut(s)	5, 182, 260
BstSFI	CTRYAG	3 cut(s)	31, 619, 745
BstUI	CGCG	4 cut(s)	423, 502, 642, 739
BstV1I	GCAGC	1 cut(s)	60
BstX2I	RGATCY	2 cut(s)	193, 201
BstYI	RGATCY	2 cut(s)	193, 201
BsuRI	GGCC	4 cut(s)	5, 153, 187, 222
BtgI	CCRYGG	2 cut(s)	269, 538
BtrI	CACGTC	1 cut(s)	356
BtsCI	GGATG	3 cut(s)	238, 313, 556
BtsIMutI	CAGTG	2 cut(s)	231, 573
BtuMI	TCGCGA	1 cut(s)	739
BveI	ACCTGC	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	74, 155
Cfr13I	GGNCC	4 cut(s)	221, 471, 535, 627
CseI	GACGC	3 cut(s)	54, 78, 188
Csp6I	GTAC	3 cut(s)	10, 292, 411
CviQI	GTAC	3 cut(s)	10, 292, 411
DdeI	CTNAG	4 cut(s)	197, 246, 378, 701
DpnI	GATC	7 cut(s)	99, 195, 203, 580, 592, 691, 742
DpnII	GATC	7 cut(s)	97, 193, 201, 578, 590, 689, 740
DraIII	CACNNNGTG	1 cut(s)	605
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	607
EarI	CTCTTC	1 cut(s)	607
EciI	GGCGGA	1 cut(s)	48
Eco31I	GGTCTC	2 cut(s)	120, 735
Eco47I	GGWCC	3 cut(s)	471, 535, 627
Eco57I	CTGAAG	1 cut(s)	336
Eco72I	CACGTG	2 cut(s)	65, 605
Eco91I	GGTNACC	1 cut(s)	504
EcoO109I	RGGNCCY	2 cut(s)	471, 627
EcoO65I	GGTNACC	1 cut(s)	504
EcoRII	CCWGG	2 cut(s)	5, 182
FaiI	YATR	4 cut(s)	219, 300, 438, 678
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FaqI	GGGAC	3 cut(s)	457, 548, 613
FauI	CCCGC	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	49, 312
FokI	GGATG	3 cut(s)	245, 320, 563
Fsp4HI	GCNGC	2 cut(s)	49, 312
FspBI	CTAG	2 cut(s)	546, 576
GluI	GCNGC	2 cut(s)	49, 312
GsaI	CCCAGC	1 cut(s)	687
GsuI	CTGGAG	1 cut(s)	433
HaeIII	GGCC	4 cut(s)	5, 153, 187, 222
HapII	CCGG	2 cut(s)	52, 261
HgaI	GACGC	3 cut(s)	54, 78, 188
Hin1I	GRCGYC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HinfI	GANTC	4 cut(s)	55, 527, 655, 697
HpaII	CCGG	2 cut(s)	52, 261
HphI	GGTGA	4 cut(s)	129, 498, 504, 591
Hpy166II	GTNNAC	4 cut(s)	44, 68, 353, 638
Hpy188I	TCNGA	2 cut(s)	654, 702
Hpy188III	TCNNGA	7 cut(s)	95, 176, 450, 576, 588, 662, 738
Hpy8I	GTNNAC	4 cut(s)	44, 68, 353, 638
Hpy99I	CGWCG	5 cut(s)	45, 48, 86, 89, 135
HpyAV	CCTTC	5 cut(s)	156, 223, 447, 519, 606
HpyCH4III	ACNGT	6 cut(s)	107, 131, 296, 539, 713, 749
HpyCH4IV	ACGT	3 cut(s)	64, 355, 604
HpyCH4V	TGCA	2 cut(s)	571, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 317
HpyF3I	CTNAG	4 cut(s)	197, 246, 378, 701
HpySE526I	ACGT	3 cut(s)	64, 355, 604
Hsp92I	GRCGYC	1 cut(s)	180
Kzo9I	GATC	7 cut(s)	97, 193, 201, 578, 590, 689, 740
LmnI	GCTCC	3 cut(s)	148, 265, 452
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	546, 576
MaeII	ACGT	3 cut(s)	64, 355, 604
MaeIII	GTNAC	3 cut(s)	504, 524, 707
MalI	GATC	7 cut(s)	99, 195, 203, 580, 592, 691, 742
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	7 cut(s)	97, 193, 201, 578, 590, 689, 740
MboII	GAAGA	4 cut(s)	161, 203, 233, 624
MflI	RGATCY	2 cut(s)	193, 201
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	250, 366, 582
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	49, 521, 664, 706
MmeI	TCCRAC	1 cut(s)	632
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	52, 261
MspR9I	CCNGG	3 cut(s)	7, 184, 262
MvaI	CCWGG	2 cut(s)	7, 184
MvnI	CGCG	4 cut(s)	423, 502, 642, 739
MwoI	GCNNNNNNNGC	2 cut(s)	308, 317
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	7 cut(s)	97, 193, 201, 578, 590, 689, 740
NlaIV	GGNNCC	5 cut(s)	203, 267, 473, 536, 629
NmuCI	GTSAC	2 cut(s)	504, 524
NruI	TCGCGA	1 cut(s)	739
NspV	TTCGAA	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	2 cut(s)	487, 658
PflMI	CCANNNNNTGG	1 cut(s)	608
PkrI	GCNGC	2 cut(s)	50, 313
PleI	GAGTC	4 cut(s)	49, 521, 663, 705
PmaCI	CACGTG	2 cut(s)	65, 605
PmlI	CACGTG	2 cut(s)	65, 605
PpsI	GAGTC	4 cut(s)	49, 521, 663, 705
Ppu21I	YACGTR	2 cut(s)	65, 605
PpuMI	RGGWCCY	2 cut(s)	471, 627
Psp5II	RGGWCCY	2 cut(s)	471, 627
Psp6I	CCWGG	2 cut(s)	5, 182
PspCI	CACGTG	2 cut(s)	65, 605
PspEI	GGTNACC	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	683
PspGI	CCWGG	2 cut(s)	5, 182
PspN4I	GGNNCC	5 cut(s)	203, 267, 473, 536, 629
PspPI	GGNCC	4 cut(s)	221, 471, 535, 627
PspPPI	RGGWCCY	2 cut(s)	471, 627
PsuI	RGATCY	2 cut(s)	193, 201
RruI	TCGCGA	1 cut(s)	739
RsaI	GTAC	3 cut(s)	11, 293, 412
RsaNI	GTAC	3 cut(s)	10, 292, 411
SalI	GTCGAC	1 cut(s)	42
SatI	GCNGC	2 cut(s)	49, 312
Sau3AI	GATC	7 cut(s)	97, 193, 201, 578, 590, 689, 740
Sau96I	GGNCC	4 cut(s)	221, 471, 535, 627
SchI	GAGTC	4 cut(s)	49, 521, 664, 706
ScrFI	CCNGG	3 cut(s)	7, 184, 262
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	3 cut(s)	31, 619, 745
SfuI	TTCGAA	1 cut(s)	163
SgrDI	CGTCGACG	1 cut(s)	42
SinI	GGWCC	3 cut(s)	471, 535, 627
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
Sse9I	AATT	3 cut(s)	250, 366, 582
SsiI	CCGC	5 cut(s)	59, 141, 302, 311, 502
SspMI	CTAG	2 cut(s)	546, 576
StyD4I	CCNGG	3 cut(s)	5, 182, 260
TaaI	ACNGT	6 cut(s)	107, 131, 296, 539, 713, 749
TaiI	ACGT	3 cut(s)	67, 358, 607
TaqI	TCGA	2 cut(s)	43, 163
TasI	AATT	3 cut(s)	250, 366, 582
TauI	GCSGC	1 cut(s)	314
TscAI	CASTG	2 cut(s)	231, 573
TseFI	GTSAC	2 cut(s)	504, 524
TseI	GCWGC	1 cut(s)	48
Tsp45I	GTSAC	2 cut(s)	504, 524
TspDTI	ATGAA	1 cut(s)	681
TspRI	CASTG	2 cut(s)	231, 573
Van91I	CCANNNNNTGG	1 cut(s)	608
VpaK11BI	GGWCC	3 cut(s)	471, 535, 627
XbaI	TCTAGA	1 cut(s)	575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	43
XspI	CTAG	2 cut(s)	546, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.