Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Forward (+)

28843672 .. 28845963

Gene Structure 2292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0164600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGCGCACAGGTTGCTAAGGAATGTGGAGGCGGACGGTTGGGAGCGATCGGACTTCCCCATCATCTGCGAGTCATGCCTCGGCGACAACCCCTACGTTCGCATGACCAAAGCCGATTACGACAAGGAGTGCAAGATCTGCACCCGCCCCTTCACCGTCTTCCGGTGGCGCCCCGGCCGCGACGCCCGCTTCAAGAAGTCCGAGATCTGCCAGACTTGCAGCAAGTTGAAGAACGTCTGCCAAGTCTGCCTCCTCGATCTCGACTACGGCCTCCCCGTCCAGGTCCGCGACACAGCTCTCGCCATCGGCTCCGACGACGCCATTCCCAAGAGCGACGTCAATCGCGAGTTCTTCGCCGAGGAACATGACCGAAAGGCTCGGGCTGGAATCGATTATGAATCGTCGTACGGGAAGGCGAGGCCGAATGACACGATTCTGAAGCTGCAGAGAACGACGCCGTATTACAAGAGGAACCGGGCGCATGTGTGCAGTTTCTTTATTCGGGGCGAGTGCACTAGAGGTGCTGAGTGCCCTTACCGGCACGAGATGCCCATCACTGGCGAGTTGTCACAGCAAAATATCAAAGATCGATACTACGGAGTCAATGATCCTGTGGCAATGAAGCTACTTAACAAGGCTGGAGAGATGCCCTCCCTGGAACCGCCGGAGGATGAAAGCATTAGAACCCTGTATGTGGGTGGGATTGATGCAAGAGTCTCTGAGCAGGATTTAAGGGATCAATTTTATGCTCATGGCGAAATAGAATCTGTTAGGATGGTGCTCCAACGAGCATGTGCTTTTGTAACATACACAACAAGAGAAGCTGCAGAAAAGGCCGCAGAAGAACTCTCCAATAGGCTGGTGGTGAAGGGTTTGAGGTTGAAGTTAATGTGGGGTAGGCCGCAAGCACCGAAACAGGACTTGGAGGGCACAGATGAGGCTAGGCAACAGGCTGTGGCTCATAGTGGCTTGTTGCCTCGCGCAGTCATATCCCAACAGCAGAGCCAATTACAAGACCAATCTGCACCACCAGTGCAGCACTACTACAACATCCCACCTCCAGCTTCGCAGGAGAGAACGTATTATCCATCCATGGATCCTCAAAGAATGGGTGCAGTTGTTCGATCGCAGGATGGAGCTCCAAGTGCTCCCAGAGGGTCAGGTGAGAACAGTTCTGGTTCCGAGAGGCAGCATTATGCTTTTCAAAGTATGGCTCCTCCACATGGTCAATATAATCAGCAGTTTTATCCTCAACCATACAGCGGTTATATGCCTCCACCACCTTATCAGCAATACCCTCCGCAATATCATGCTGCAGTGCCACCACCACCATCCTTGCCAATGAATCAACATTACCAGCATTCTGCAACACCAGGGACTGCACCCTCAGGTTCTACATCGTCTGTACCTGCACAATCAAATTCTGGACCTTCCGAGTCTGGCTCTGGGCCTGTGCCAACAGGGTCATCACAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

492

Amino Acids

55.04

Weight (kDa)

7.16

Isoelectric Point (pI)

66.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STL11_N	PF21369	20 - 109	8.4e-30	STL11, N-terminal
Torus	PF16131	150 - 193	4.9e-07	Torus domain
zf-CCCH_RBM22	PF25584	157 - 183	1.8e-11	RBM22 CCCH zinc finger domain
RRM_1	PF00076	230 - 288	6.4e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	339
Acc36I	ACCTGC	1 cut(s)	1417
AccB1I	GGYRCC	1 cut(s)	168
AccII	CGCG	4 cut(s)	180, 288, 345, 981
AclWI	GGATC	4 cut(s)	602, 744, 1091, 1104
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	1420
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
AfaI	GTAC	2 cut(s)	407, 1407
AfiI	CCNNNNNNNGG	6 cut(s)	162, 280, 557, 694, 1223, 1262
AgsI	TTSAA	4 cut(s)	193, 229, 883, 1205
AjnI	CCWGG	3 cut(s)	279, 654, 1372
AjuI	GAANNNNNNNTTGG	2 cut(s)	905, 937
AleI	CACNNNNGTG	1 cut(s)	1474
AloI	GAACNNNNNNTCC	2 cut(s)	1069, 1101
AluBI	AGCT	6 cut(s)	296, 442, 625, 824, 1064, 1139
AluI	AGCT	6 cut(s)	296, 442, 625, 824, 1064, 1139
Alw21I	GWGCWC	4 cut(s)	515, 783, 1141, 1150
Alw26I	GTCTC	1 cut(s)	721
Alw44I	GTGCAC	1 cut(s)	511
AlwI	GGATC	4 cut(s)	602, 744, 1091, 1104
AlwNI	CAGNNNCTG	1 cut(s)	1379
Ama87I	CYCGRG	1 cut(s)	378
AoxI	GGCC	6 cut(s)	175, 268, 419, 834, 899, 1448
ApaLI	GTGCAC	1 cut(s)	511
ApeKI	GCWGC	6 cut(s)	219, 442, 824, 1036, 1189, 1313
ApoI	RAATTY	1 cut(s)	1420
AspLEI	GCGC	4 cut(s)	7, 171, 481, 983
AspS9I	GGNCC	3 cut(s)	283, 1427, 1448
AsuC2I	CCSGG	2 cut(s)	174, 476
AsuHPI	GGTGA	3 cut(s)	145, 877, 1175
AvaI	CYCGRG	1 cut(s)	378
AvaII	GGWCC	2 cut(s)	283, 1427
AxyI	CCTNAGG	1 cut(s)	1387
BaeGI	GKGCMC	3 cut(s)	515, 533, 932
BamHI	GGATCC	1 cut(s)	1096
BanI	GGYRCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	1141
BauI	CACGAG	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	4 cut(s)	515, 783, 1141, 1150
BbvI	GCAGC	6 cut(s)	231, 429, 811, 1048, 1201, 1300
BccI	CCATC	7 cut(s)	68, 311, 560, 769, 1096, 1127, 1339
BceAI	ACGGC	2 cut(s)	283, 442
BciT130I	CCWGG	3 cut(s)	281, 656, 1374
BcnI	CCSGG	2 cut(s)	174, 476
BcoDI	GTCTC	1 cut(s)	721
BfaI	CTAG	2 cut(s)	516, 942
BfmI	CTRYAG	3 cut(s)	443, 825, 1314
BfoI	RGCGCY	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	1417
BglII	AGATCT	2 cut(s)	135, 204
BisI	GCNGC	9 cut(s)	178, 220, 443, 825, 837, 902, 1037, 1190, 1314
BlsI	GCNGC	9 cut(s)	179, 221, 444, 826, 838, 903, 1038, 1191, 1315
Bme1390I	CCNGG	5 cut(s)	174, 281, 476, 656, 1374
Bme18I	GGWCC	2 cut(s)	283, 1427
BmeT110I	CYCGRG	1 cut(s)	378
BmgT120I	GGNCC	3 cut(s)	283, 1427, 1448
BmiI	GGNNCC	7 cut(s)	170, 310, 473, 660, 1098, 1180, 1215
BmrFI	CCNGG	5 cut(s)	174, 281, 476, 656, 1374
BmsI	GCATC	3 cut(s)	537, 636, 697
BpiI	GAAGAC	1 cut(s)	151
BplI	GAGNNNNNCTC	4 cut(s)	635, 667, 1427, 1459
BpmI	CTGGAG	2 cut(s)	660, 1044
Bpu10I	CCTNAGC	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	174, 476
Bsa29I	ATCGAT	2 cut(s)	390, 589
BsaBI	GATNNNNATC	1 cut(s)	551
BsaHI	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
BsaJI	CCNNGG	6 cut(s)	79, 172, 357, 654, 1092, 1373
BsaWI	WCCGGW	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	1064, 1094
Bsc4I	CCNNNNNNNGG	6 cut(s)	162, 280, 557, 694, 1223, 1262
Bse118I	RCCGGY	1 cut(s)	537
Bse1I	ACTGG	2 cut(s)	562, 1031
Bse21I	CCTNAGG	1 cut(s)	1387
Bse3DI	GCAATG	1 cut(s)	624
Bse8I	GATNNNNATC	1 cut(s)	551
BseBI	CCWGG	3 cut(s)	281, 656, 1374
BseCI	ATCGAT	2 cut(s)	390, 589
BseDI	CCNNGG	6 cut(s)	79, 172, 357, 654, 1092, 1373
BseGI	GGATG	6 cut(s)	676, 780, 1050, 1088, 1138, 1331
BseJI	GATNNNNATC	1 cut(s)	551
BseLI	CCNNNNNNNGG	6 cut(s)	162, 280, 557, 694, 1223, 1262
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	3 cut(s)	516, 711, 1401
BseNI	ACTGG	2 cut(s)	562, 1031
BseRI	GAGGAG	2 cut(s)	242, 1206
BseSI	GKGCMC	3 cut(s)	515, 533, 932
BseX3I	CGGCCG	1 cut(s)	175
BseXI	GCAGC	6 cut(s)	231, 429, 811, 1048, 1201, 1300
BsgI	GTGCAG	7 cut(s)	124, 508, 1008, 1055, 1134, 1365, 1395
Bsh1236I	CGCG	4 cut(s)	180, 288, 345, 981
Bsh1285I	CGRYCG	3 cut(s)	50, 178, 1127
BshFI	GGCC	6 cut(s)	177, 270, 421, 836, 901, 1450
BshNI	GGYRCC	1 cut(s)	168
BshVI	ATCGAT	2 cut(s)	390, 589
BsiEI	CGRYCG	3 cut(s)	50, 178, 1127
BsiHKAI	GWGCWC	4 cut(s)	515, 783, 1141, 1150
BsiHKCI	CYCGRG	1 cut(s)	378
BsiSI	CCGG	5 cut(s)	163, 174, 475, 538, 665
BsiWI	CGTACG	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	1390
BslI	CCNNNNNNNGG	6 cut(s)	162, 280, 557, 694, 1223, 1262
BsmAI	GTCTC	1 cut(s)	721
BsmFI	GGGAC	1 cut(s)	1390
BsmI	GAATGC	1 cut(s)	1360
BsnI	GGCC	6 cut(s)	177, 270, 421, 836, 901, 1450
BsoBI	CYCGRG	1 cut(s)	378
Bsp1286I	GDGCHC	6 cut(s)	515, 533, 783, 932, 1141, 1150
Bsp143I	GATC	9 cut(s)	47, 135, 204, 256, 586, 607, 736, 1096, 1124
Bsp19I	CCATGG	1 cut(s)	1092
Bsp68I	TCGCGA	1 cut(s)	345
BspANI	GGCC	6 cut(s)	177, 270, 421, 836, 901, 1450
BspCNI	CTCAG	3 cut(s)	517, 712, 1400
BspDI	ATCGAT	2 cut(s)	390, 589
BspFNI	CGCG	4 cut(s)	180, 288, 345, 981
BspLI	GGNNCC	7 cut(s)	170, 310, 473, 660, 1098, 1180, 1215
BspMAI	CTGCAG	3 cut(s)	447, 829, 1318
BspMI	ACCTGC	1 cut(s)	1417
BspPI	GGATC	4 cut(s)	602, 744, 1091, 1104
BspT107I	GGYRCC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	537
BsrI	ACTGG	2 cut(s)	562, 1031
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	6 cut(s)	79, 172, 357, 654, 1092, 1373
BssMI	GATC	9 cut(s)	47, 135, 204, 256, 586, 607, 736, 1096, 1124
BssNI	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
BssSI	CACGAG	1 cut(s)	542
BssT1I	CCWWGG	1 cut(s)	1092
Bst2BI	CACGAG	1 cut(s)	542
Bst2UI	CCWGG	3 cut(s)	281, 656, 1374
Bst4CI	ACNGT	3 cut(s)	38, 157, 1172
BstACI	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
BstAPI	GCANNNNNTGC	3 cut(s)	13, 138, 547
BstC8I	GCNNGC	2 cut(s)	187, 906
BstDEI	CTNAG	4 cut(s)	17, 525, 720, 1387
BstDSI	CCRYGG	1 cut(s)	1092
BstF5I	GGATG	6 cut(s)	676, 780, 1050, 1088, 1138, 1331
BstFNI	CGCG	4 cut(s)	180, 288, 345, 981
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	4 cut(s)	7, 171, 481, 983
BstKTI	GATC	9 cut(s)	50, 138, 207, 259, 589, 610, 739, 1099, 1127
BstMAI	GTCTC	1 cut(s)	721
BstMBI	GATC	9 cut(s)	47, 135, 204, 256, 586, 607, 736, 1096, 1124
BstMCI	CGRYCG	3 cut(s)	50, 178, 1127
BstNI	CCWGG	3 cut(s)	281, 656, 1374
BstNSI	RCATGY	2 cut(s)	485, 795
BstSCI	CCNGG	5 cut(s)	172, 279, 474, 654, 1372
BstSFI	CTRYAG	3 cut(s)	443, 825, 1314
BstSLI	GKGCMC	3 cut(s)	515, 533, 932
BstUI	CGCG	4 cut(s)	180, 288, 345, 981
BstV1I	GCAGC	6 cut(s)	231, 429, 811, 1048, 1201, 1300
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	3 cut(s)	135, 204, 1096
BstXI	CCANNNNNNTGG	1 cut(s)	859
BstYI	RGATCY	3 cut(s)	135, 204, 1096
BstZI	CGGCCG	1 cut(s)	175
Bsu15I	ATCGAT	2 cut(s)	390, 589
Bsu36I	CCTNAGG	1 cut(s)	1387
BsuRI	GGCC	6 cut(s)	177, 270, 421, 836, 901, 1450
BsuTUI	ATCGAT	2 cut(s)	390, 589
BtgI	CCRYGG	1 cut(s)	1092
BtsCI	GGATG	6 cut(s)	676, 780, 1050, 1088, 1138, 1331
BtsI	GCAGTG	1 cut(s)	1323
BtsIMutI	CAGTG	3 cut(s)	555, 1038, 1323
BtuMI	TCGCGA	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	1417
Cac8I	GCNNGC	2 cut(s)	187, 906
CaiI	CAGNNNCTG	1 cut(s)	1379
CfoI	GCGC	4 cut(s)	7, 171, 481, 983
Cfr10I	RCCGGY	1 cut(s)	537
Cfr13I	GGNCC	3 cut(s)	283, 1427, 1448
ClaI	ATCGAT	2 cut(s)	390, 589
CseI	GACGC	3 cut(s)	191, 326, 463
Csp6I	GTAC	2 cut(s)	406, 1406
CspCI	CAANNNNNGTGG	2 cut(s)	1317, 1352
CviAII	CATG	9 cut(s)	75, 103, 365, 482, 752, 792, 1093, 1223, 1310
CviQI	GTAC	2 cut(s)	406, 1406
DdeI	CTNAG	4 cut(s)	17, 525, 720, 1387
DinI	GGCGCC	1 cut(s)	170
DpnI	GATC	9 cut(s)	49, 137, 206, 258, 588, 609, 738, 1098, 1126
DpnII	GATC	9 cut(s)	47, 135, 204, 256, 586, 607, 736, 1096, 1124
EaeI	YGGCCR	1 cut(s)	175
EagI	CGGCCG	1 cut(s)	175
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	1139
EclXI	CGGCCG	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	1092
Eco24I	GRGCYC	1 cut(s)	1141
Eco47I	GGWCC	2 cut(s)	283, 1427
Eco52I	CGGCCG	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	1139
Eco57I	CTGAAG	1 cut(s)	458
Eco81I	CCTNAGG	1 cut(s)	1387
Eco88I	CYCGRG	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	1139
EcoRII	CCWGG	3 cut(s)	279, 654, 1372
EcoT14I	CCWWGG	1 cut(s)	1092
EcoT38I	GRGCYC	1 cut(s)	1141
EgeI	GGCGCC	1 cut(s)	170
EheI	GGCGCC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	1092
FaeI	CATG	9 cut(s)	78, 106, 368, 485, 755, 795, 1096, 1226, 1313
FaqI	GGGAC	1 cut(s)	1390
FatI	CATG	9 cut(s)	74, 102, 364, 481, 751, 791, 1092, 1222, 1309
FauI	CCCGC	2 cut(s)	152, 194
Fnu4HI	GCNGC	9 cut(s)	178, 220, 443, 825, 837, 902, 1037, 1190, 1314
FokI	GGATG	6 cut(s)	683, 787, 1037, 1075, 1145, 1318
FriOI	GRGCYC	1 cut(s)	1141
Fsp4HI	GCNGC	9 cut(s)	178, 220, 443, 825, 837, 902, 1037, 1190, 1314
FspBI	CTAG	2 cut(s)	516, 942
GlaI	GCGC	4 cut(s)	6, 170, 480, 982
GluI	GCNGC	9 cut(s)	178, 220, 443, 825, 837, 902, 1037, 1190, 1314
GsuI	CTGGAG	2 cut(s)	660, 1044
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	6 cut(s)	177, 270, 421, 836, 901, 1450
HapII	CCGG	5 cut(s)	163, 174, 475, 538, 665
HgaI	GACGC	3 cut(s)	191, 326, 463
HhaI	GCGC	4 cut(s)	7, 171, 481, 983
Hin1I	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
Hin1II	CATG	9 cut(s)	78, 106, 368, 485, 755, 795, 1096, 1226, 1313
Hin6I	GCGC	4 cut(s)	5, 169, 479, 981
HinP1I	GCGC	4 cut(s)	5, 169, 479, 981
HinfI	GANTC	9 cut(s)	71, 387, 398, 433, 600, 714, 764, 1345, 1436
HpaII	CCGG	5 cut(s)	163, 174, 475, 538, 665
HphI	GGTGA	3 cut(s)	145, 877, 1175
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	7 cut(s)	52, 202, 313, 438, 721, 1183, 1435
Hpy188III	TCNNGA	4 cut(s)	193, 260, 344, 1425
Hpy8I	GTNNAC	1 cut(s)	513
Hpy99I	CGWCG	6 cut(s)	185, 317, 320, 338, 406, 457
HpyAV	CCTTC	4 cut(s)	160, 406, 862, 1440
HpyCH4III	ACNGT	3 cut(s)	38, 157, 1172
HpyCH4IV	ACGT	4 cut(s)	96, 234, 336, 1079
HpyF3I	CTNAG	4 cut(s)	17, 525, 720, 1387
HpySE526I	ACGT	4 cut(s)	96, 234, 336, 1079
Hsp92I	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
Hsp92II	CATG	9 cut(s)	78, 106, 368, 485, 755, 795, 1096, 1226, 1313
HspAI	GCGC	4 cut(s)	5, 169, 479, 981
KasI	GGCGCC	1 cut(s)	168
Kzo9I	GATC	9 cut(s)	47, 135, 204, 256, 586, 607, 736, 1096, 1124
LmnI	GCTCC	7 cut(s)	43, 314, 786, 1136, 1144, 1153, 1219
Lsp1109I	GCAGC	6 cut(s)	231, 429, 811, 1048, 1201, 1300
LweI	GCATC	3 cut(s)	537, 636, 697
MaeI	CTAG	2 cut(s)	516, 942
MaeII	ACGT	4 cut(s)	96, 234, 336, 1079
MaeIII	GTNAC	2 cut(s)	567, 802
MalI	GATC	9 cut(s)	49, 137, 206, 258, 588, 609, 738, 1098, 1126
MboI	GATC	9 cut(s)	47, 135, 204, 256, 586, 607, 736, 1096, 1124
MboII	GAAGA	4 cut(s)	151, 241, 343, 854
MflI	RGATCY	3 cut(s)	135, 204, 1096
MhlI	GDGCHC	6 cut(s)	515, 533, 783, 932, 1141, 1150
MluCI	AATT	3 cut(s)	740, 1007, 1420
Mly113I	GGCGCC	1 cut(s)	169
MlyI	GAGTC	4 cut(s)	80, 609, 723, 1445
MmeI	TCCRAC	2 cut(s)	336, 808
MseI	TTAA	3 cut(s)	630, 731, 887
MslI	CAYNNNNRTG	1 cut(s)	1474
MspA1I	CMGCKG	1 cut(s)	1263
MspI	CCGG	5 cut(s)	163, 174, 475, 538, 665
MspR9I	CCNGG	5 cut(s)	174, 281, 476, 656, 1374
Mva1269I	GAATGC	1 cut(s)	1360
MvaI	CCWGG	3 cut(s)	281, 656, 1374
MvnI	CGCG	4 cut(s)	180, 288, 345, 981
NarI	GGCGCC	1 cut(s)	169
NciI	CCSGG	2 cut(s)	174, 476
NcoI	CCATGG	1 cut(s)	1092
NdeII	GATC	9 cut(s)	47, 135, 204, 256, 586, 607, 736, 1096, 1124
NlaIII	CATG	9 cut(s)	78, 106, 368, 485, 755, 795, 1096, 1226, 1313
NlaIV	GGNNCC	7 cut(s)	170, 310, 473, 660, 1098, 1180, 1215
NmeAIII	GCCGAG	2 cut(s)	60, 382
NmuCI	GTSAC	1 cut(s)	567
NruI	TCGCGA	1 cut(s)	345
NspI	RCATGY	2 cut(s)	485, 795
OliI	CACNNNNGTG	1 cut(s)	1474
PcsI	WCGNNNNNNNCGW	3 cut(s)	273, 312, 342
PctI	GAATGC	1 cut(s)	1360
PfeI	GAWTC	5 cut(s)	387, 398, 433, 764, 1345
Pfl23II	CGTACG	1 cut(s)	405
PkrI	GCNGC	9 cut(s)	179, 221, 444, 826, 838, 903, 1038, 1191, 1315
Ple19I	CGATCG	2 cut(s)	50, 1127
PleI	GAGTC	4 cut(s)	79, 608, 722, 1444
PluTI	GGCGCC	1 cut(s)	172
PpsI	GAGTC	4 cut(s)	79, 608, 722, 1444
Psp124BI	GAGCTC	1 cut(s)	1141
Psp6I	CCWGG	3 cut(s)	279, 654, 1372
PspGI	CCWGG	3 cut(s)	279, 654, 1372
PspLI	CGTACG	1 cut(s)	405
PspN4I	GGNNCC	7 cut(s)	170, 310, 473, 660, 1098, 1180, 1215
PspPI	GGNCC	3 cut(s)	283, 1427, 1448
PstI	CTGCAG	3 cut(s)	447, 829, 1318
PstNI	CAGNNNCTG	1 cut(s)	1379
PsuI	RGATCY	3 cut(s)	135, 204, 1096
PvuI	CGATCG	2 cut(s)	50, 1127
RruI	TCGCGA	1 cut(s)	345
RsaI	GTAC	2 cut(s)	407, 1407
RsaNI	GTAC	2 cut(s)	406, 1406
RseI	CAYNNNNRTG	1 cut(s)	1474
SacI	GAGCTC	1 cut(s)	1141
SaqAI	TTAA	3 cut(s)	630, 731, 887
SatI	GCNGC	9 cut(s)	178, 220, 443, 825, 837, 902, 1037, 1190, 1314
Sau3AI	GATC	9 cut(s)	47, 135, 204, 256, 586, 607, 736, 1096, 1124
Sau96I	GGNCC	3 cut(s)	283, 1427, 1448
SchI	GAGTC	4 cut(s)	80, 609, 723, 1445
ScrFI	CCNGG	5 cut(s)	174, 281, 476, 656, 1374
SduI	GDGCHC	6 cut(s)	515, 533, 783, 932, 1141, 1150
SfaNI	GCATC	3 cut(s)	537, 636, 697
SfcI	CTRYAG	3 cut(s)	443, 825, 1314
SfoI	GGCGCC	1 cut(s)	170
SinI	GGWCC	2 cut(s)	283, 1427
SmiMI	CAYNNNNRTG	1 cut(s)	1474
Sse9I	AATT	3 cut(s)	740, 1007, 1420
SspDI	GGCGCC	1 cut(s)	168
SspMI	CTAG	2 cut(s)	516, 942
SstI	GAGCTC	1 cut(s)	1141
StyD4I	CCNGG	5 cut(s)	172, 279, 474, 654, 1372
StyI	CCWWGG	1 cut(s)	1092
TaaI	ACNGT	3 cut(s)	38, 157, 1172
TaiI	ACGT	4 cut(s)	99, 237, 339, 1082
TaqI	TCGA	5 cut(s)	255, 261, 390, 589, 1123
TaqII	GACCGA	1 cut(s)	384
TasI	AATT	3 cut(s)	740, 1007, 1420
TauI	GCSGC	3 cut(s)	180, 839, 904
TfiI	GAWTC	5 cut(s)	387, 398, 433, 764, 1345
Tru1I	TTAA	3 cut(s)	630, 731, 887
Tru9I	TTAA	3 cut(s)	630, 731, 887
TscAI	CASTG	3 cut(s)	562, 1038, 1323
TseFI	GTSAC	1 cut(s)	567
TseI	GCWGC	6 cut(s)	219, 442, 824, 1036, 1189, 1313
Tsp45I	GTSAC	1 cut(s)	567
TspDTI	ATGAA	4 cut(s)	411, 635, 687, 1358
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	3 cut(s)	562, 1038, 1323
VneI	GTGCAC	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	283, 1427
XapI	RAATTY	1 cut(s)	1420
XceI	RCATGY	2 cut(s)	485, 795
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XspI	CTAG	2 cut(s)	516, 942
ZraI	GACGTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.