Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002248.1

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Forward (+)

198276 .. 199337

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002248.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ctgaaaaggttcagggaccatggagctagggatcattatcgttcccccgtgcagtctagatcaatttcacgttctccttcaccacgcgatgaaagagactacaggcggtccccaagttctagggagaatggacggagtccacgtgatgagagggactacagtagatccccaagtccaagggataacggtcaggatctgcgtgatgagagagtctatgcacctagcaggttaaggagtccaaggggtaataggcacagtcctacgtcacgctcacggtcatacagtcctcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

97

Amino Acids

11.51

Weight (kDa)

11.52

Isoelectric Point (pI)

136.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	216
AccII	CGCG	1 cut(s)	87
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	3 cut(s)	39, 159, 201
AcvI	CACGTG	1 cut(s)	143
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	3 cut(s)	39, 159, 201
AlwNI	CAGNNNCTG	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	16, 108
AsuHPI	GGTGA	1 cut(s)	72
AvaII	GGWCC	2 cut(s)	16, 108
BbrPI	CACGTG	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	4 cut(s)	27, 57, 120, 222
BfmI	CTRYAG	2 cut(s)	100, 157
BfuAI	ACCTGC	1 cut(s)	216
Bme18I	GGWCC	2 cut(s)	16, 108
BmgT120I	GGNCC	2 cut(s)	16, 108
BmiI	GGNNCC	2 cut(s)	17, 110
BsaAI	YACGTR	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	3 cut(s)	19, 176, 239
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	3 cut(s)	19, 176, 239
BseJI	GATNNNNATC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	87
BslFI	GGGAC	3 cut(s)	29, 94, 167
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	3 cut(s)	29, 94, 167
Bsp143I	GATC	4 cut(s)	31, 59, 164, 193
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	17, 110
BspMI	ACCTGC	1 cut(s)	216
BspPI	GGATC	3 cut(s)	39, 159, 201
BssECI	CCNNGG	3 cut(s)	19, 176, 239
BssMI	GATC	4 cut(s)	31, 59, 164, 193
BssT1I	CCWWGG	3 cut(s)	19, 176, 239
Bst4CI	ACNGT	5 cut(s)	161, 188, 257, 276, 284
BstBAI	YACGTR	1 cut(s)	143
BstDSI	CCRYGG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	4 cut(s)	34, 62, 167, 196
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	4 cut(s)	31, 59, 164, 193
BstSFI	CTRYAG	2 cut(s)	100, 157
BstUI	CGCG	1 cut(s)	87
BstX2I	RGATCY	2 cut(s)	164, 193
BstYI	RGATCY	2 cut(s)	164, 193
BtgI	CCRYGG	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	16, 108
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	1 cut(s)	26
CviKI_1	RGCY	1 cut(s)	26
DpnI	GATC	4 cut(s)	33, 61, 166, 195
DpnII	GATC	4 cut(s)	31, 59, 164, 193
Eco130I	CCWWGG	3 cut(s)	19, 176, 239
Eco47I	GGWCC	2 cut(s)	16, 108
Eco72I	CACGTG	1 cut(s)	143
EcoT14I	CCWWGG	3 cut(s)	19, 176, 239
ErhI	CCWWGG	3 cut(s)	19, 176, 239
FaeI	CATG	1 cut(s)	23
FaiI	YATR	3 cut(s)	21, 216, 280
FaqI	GGGAC	3 cut(s)	29, 94, 167
FatI	CATG	1 cut(s)	19
FspBI	CTAG	4 cut(s)	27, 57, 120, 222
Hin1II	CATG	1 cut(s)	23
HinfI	GANTC	3 cut(s)	136, 210, 235
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188III	TCNNGA	2 cut(s)	57, 191
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	5 cut(s)	161, 188, 257, 276, 284
HpyCH4IV	ACGT	3 cut(s)	70, 142, 263
HpyCH4V	TGCA	2 cut(s)	52, 218
HpySE526I	ACGT	3 cut(s)	70, 142, 263
Hsp92II	CATG	1 cut(s)	23
Kzo9I	GATC	4 cut(s)	31, 59, 164, 193
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	3 cut(s)	88, 176, 211
MaeI	CTAG	4 cut(s)	27, 57, 120, 222
MaeII	ACGT	3 cut(s)	70, 142, 263
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	4 cut(s)	33, 61, 166, 195
MboI	GATC	4 cut(s)	31, 59, 164, 193
MflI	RGATCY	2 cut(s)	164, 193
MluCI	AATT	1 cut(s)	63
MlyI	GAGTC	3 cut(s)	145, 219, 244
MnlI	CCTC	1 cut(s)	144
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	230
MvnI	CGCG	1 cut(s)	87
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	4 cut(s)	31, 59, 164, 193
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	2 cut(s)	17, 110
NmuCI	GTSAC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	135
PleI	GAGTC	3 cut(s)	144, 218, 243
PmaCI	CACGTG	1 cut(s)	143
PmlI	CACGTG	1 cut(s)	143
PpsI	GAGTC	3 cut(s)	144, 218, 243
Ppu21I	YACGTR	1 cut(s)	143
PspCI	CACGTG	1 cut(s)	143
PspN4I	GGNNCC	2 cut(s)	17, 110
PspPI	GGNCC	2 cut(s)	16, 108
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	2 cut(s)	164, 193
PsyI	GACNNNGTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	230
Sau3AI	GATC	4 cut(s)	31, 59, 164, 193
Sau96I	GGNCC	2 cut(s)	16, 108
SchI	GAGTC	3 cut(s)	145, 219, 244
SetI	ASST	7 cut(s)	11, 28, 73, 145, 223, 230, 266
SfcI	CTRYAG	2 cut(s)	100, 157
SinI	GGWCC	2 cut(s)	16, 108
Sse9I	AATT	1 cut(s)	63
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	4 cut(s)	27, 57, 120, 222
StyI	CCWWGG	3 cut(s)	19, 176, 239
TaaI	ACNGT	5 cut(s)	161, 188, 257, 276, 284
TaiI	ACGT	3 cut(s)	73, 145, 266
TasI	AATT	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	264
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	135
VpaK11BI	GGWCC	2 cut(s)	16, 108
XbaI	TCTAGA	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	4 cut(s)	27, 57, 120, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.