Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Reverse (-)

11012300 .. 11014526

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15140.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGAGAATTATACTCCGTTTTAGTTGAAGAGCGCGCATCATTAGATCGGTATCTGCACCGCACTAAATTCCTCCTTCCAAATCCGAAACCCAAAACACCCCACACAAGCAGCAAGCGCTCGTTCCTTTCGGTTCTTCTTCACCATCAGACAGGAGACCTAGGGTTAGGGTTTTGCGCGCTCAGGGTTCAAGTCCTAGCTGCAACAATGGCCAGGTACAGAAGCCGAAGCAGAAGCTACAGCCCTCGTCGGCGCAGTCGGACTCCGCCTCGCGGACGCAAGCGATACGACGACGAGCCGCGTGATCGACACCGTGACAGTAGGTCTCACAGAGACCGTAGTTCTCCTGCCCCTTCCGGTTTGCTCGTTCGCAATCTCCCTCTCGACGCTAGGCCAGAAGATCTTAGGATCCCATTTGAGCGATTTGGCCCGGTAAAGGATGTGTATCTTCCTAAGAATTACTACACAGGGGAGCCACGGGGTTTTGGGTTTGTGAAGTACCGTTATGGTGAGGATGCAGCAGAAGCAAAGCAACAACTGAATCATTCAGTTATTGGTGGGCGTGAGATAAGAATTGTGTTTGCTGAGGAGAATAGAAAAACTCCGCAAGAAATGCGCACAACTACTCGCGTAAGTAGTCGACATGGAGGAAGCTCCAGAAGGAGAACTCCACCGAGGTCCCCAAGACGGCAATATCGTTCTTACTCGCCATCACCATCACCTGTTAGGCGTGATTCAAGATATAGTTTAAAGACTTCTGGACTAGTAAAGTTTAATGAGAAAAGAGATCATACAAGTGATGGGCAACTTCTTTACCTTCCACCAATGCTCTCCATAAGTACTATGGTGGATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

286

Amino Acids

33.12

Weight (kDa)

10.95

Isoelectric Point (pI)

71.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	640
AccII	CGCG	5 cut(s)	36, 179, 273, 301, 630
AciI	CCGC	5 cut(s)	61, 266, 273, 299, 605
AclWI	GGATC	2 cut(s)	403, 416
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	68
AfaI	GTAC	3 cut(s)	218, 500, 841
AfeI	AGCGCT	1 cut(s)	119
AfiI	CCNNNNNNNGG	3 cut(s)	272, 436, 687
AgsI	TTSAA	3 cut(s)	29, 191, 738
AhdI	GACNNNNNGTC	1 cut(s)	322
AhlI	ACTAGT	1 cut(s)	763
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	3 cut(s)	200, 237, 654
AluI	AGCT	3 cut(s)	200, 237, 654
Alw26I	GTCTC	3 cut(s)	150, 327, 330
AlwI	GGATC	2 cut(s)	403, 416
Aor51HI	AGCGCT	1 cut(s)	119
AoxI	GGCC	3 cut(s)	210, 392, 427
ApeKI	GCWGC	3 cut(s)	111, 200, 518
ApoI	RAATTY	1 cut(s)	68
AspA2I	CCTAGG	1 cut(s)	160
AspLEI	GCGC	7 cut(s)	36, 38, 120, 179, 181, 255, 618
AspS9I	GGNCC	2 cut(s)	428, 678
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	4 cut(s)	134, 521, 705, 711
AvaII	GGWCC	1 cut(s)	678
AvrII	CCTAGG	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	408
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	3 cut(s)	123, 187, 530
BccI	CCATC	4 cut(s)	153, 718, 724, 794
BceAI	ACGGC	1 cut(s)	704
BciT130I	CCWGG	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	3 cut(s)	150, 327, 330
BcuI	ACTAGT	1 cut(s)	763
BfaI	CTAG	4 cut(s)	161, 197, 390, 764
BfmI	CTRYAG	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	121
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	4 cut(s)	112, 201, 299, 519
BlnI	CCTAGG	1 cut(s)	160
BlsI	GCNGC	4 cut(s)	113, 202, 300, 520
BmcAI	AGTACT	1 cut(s)	841
Bme1390I	CCNGG	2 cut(s)	214, 431
Bme18I	GGWCC	1 cut(s)	678
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	428, 678
BmiI	GGNNCC	3 cut(s)	410, 474, 680
BmrFI	CCNGG	2 cut(s)	214, 431
BmsI	GCATC	2 cut(s)	47, 505
BpmI	CTGGAG	1 cut(s)	640
Bpu10I	CCTNAGC	2 cut(s)	182, 585
BpuMI	CCSGG	1 cut(s)	431
BsaBI	GATNNNNATC	2 cut(s)	51, 444
BsaI	GGTCTC	3 cut(s)	150, 327, 330
BsaJI	CCNNGG	3 cut(s)	160, 476, 674
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 436, 687
Bse8I	GATNNNNATC	2 cut(s)	51, 444
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	3 cut(s)	160, 476, 674
BseGI	GGATG	2 cut(s)	445, 520
BseJI	GATNNNNATC	2 cut(s)	51, 444
BseLI	CCNNNNNNNGG	3 cut(s)	272, 436, 687
BseMII	CTCAG	2 cut(s)	196, 576
BsePI	GCGCGC	2 cut(s)	34, 177
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	3 cut(s)	123, 187, 530
BsgI	GTGCAG	1 cut(s)	41
Bsh1236I	CGCG	5 cut(s)	36, 179, 273, 301, 630
BshFI	GGCC	3 cut(s)	212, 394, 429
BsiSI	CCGG	2 cut(s)	357, 431
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	3 cut(s)	272, 436, 687
BsmAI	GTCTC	3 cut(s)	150, 327, 330
BsmFI	GGGAC	1 cut(s)	664
BsnI	GGCC	3 cut(s)	212, 394, 429
Bso31I	GGTCTC	3 cut(s)	150, 327, 330
Bsp143I	GATC	5 cut(s)	46, 304, 400, 408, 787
BspACI	CCGC	5 cut(s)	61, 266, 273, 299, 605
BspANI	GGCC	3 cut(s)	212, 394, 429
BspCNI	CTCAG	2 cut(s)	195, 577
BspFNI	CGCG	5 cut(s)	36, 179, 273, 301, 630
BspLI	GGNNCC	3 cut(s)	410, 474, 680
BspPI	GGATC	2 cut(s)	403, 416
BspQI	GCTCTTC	1 cut(s)	24
BspTNI	GGTCTC	3 cut(s)	150, 327, 330
BssECI	CCNNGG	3 cut(s)	160, 476, 674
BssHII	GCGCGC	2 cut(s)	34, 177
BssMI	GATC	5 cut(s)	46, 304, 400, 408, 787
BssT1I	CCWWGG	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	4 cut(s)	314, 320, 338, 503
Bst6I	CTCTTC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	613
BstC8I	GCNNGC	4 cut(s)	36, 116, 179, 281
BstDEI	CTNAG	4 cut(s)	182, 404, 453, 585
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	445, 520
BstFNI	CGCG	5 cut(s)	36, 179, 273, 301, 630
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	7 cut(s)	36, 38, 120, 179, 181, 255, 618
BstKTI	GATC	5 cut(s)	49, 307, 403, 411, 790
BstMAI	GTCTC	3 cut(s)	150, 327, 330
BstMBI	GATC	5 cut(s)	46, 304, 400, 408, 787
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 209, 524, 613
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	212, 429
BstSFI	CTRYAG	1 cut(s)	238
BstUI	CGCG	5 cut(s)	36, 179, 273, 301, 630
BstV1I	GCAGC	3 cut(s)	123, 187, 530
BstX2I	RGATCY	2 cut(s)	400, 408
BstYI	RGATCY	2 cut(s)	400, 408
BsuRI	GGCC	3 cut(s)	212, 394, 429
BtgI	CCRYGG	1 cut(s)	476
BtsCI	GGATG	2 cut(s)	445, 520
Cac8I	GCNNGC	4 cut(s)	36, 116, 179, 281
CfoI	GCGC	7 cut(s)	36, 38, 120, 179, 181, 255, 618
Cfr13I	GGNCC	2 cut(s)	428, 678
CseI	GACGC	2 cut(s)	285, 395
Csp6I	GTAC	3 cut(s)	217, 499, 840
CviAII	CATG	1 cut(s)	644
CviQI	GTAC	3 cut(s)	217, 499, 840
DdeI	CTNAG	4 cut(s)	182, 404, 453, 585
DpnI	GATC	5 cut(s)	48, 306, 402, 410, 789
DpnII	GATC	5 cut(s)	46, 304, 400, 408, 787
DraI	TTTAAA	1 cut(s)	750
DriI	GACNNNNNGTC	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	160
Eco31I	GGTCTC	3 cut(s)	150, 327, 330
Eco47I	GGWCC	1 cut(s)	678
Eco47III	AGCGCT	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	678
EcoRII	CCWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	1 cut(s)	647
FaiI	YATR	7 cut(s)	13, 507, 645, 744, 792, 836, 845
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	640
Fnu4HI	GCNGC	4 cut(s)	112, 201, 299, 519
FokI	GGATG	2 cut(s)	452, 527
Fsp4HI	GCNGC	4 cut(s)	112, 201, 299, 519
FspAI	RTGCGCAY	1 cut(s)	617
FspBI	CTAG	4 cut(s)	161, 197, 390, 764
FspI	TGCGCA	1 cut(s)	617
GlaI	GCGC	7 cut(s)	35, 37, 119, 178, 180, 254, 617
GluI	GCNGC	4 cut(s)	112, 201, 299, 519
GsuI	CTGGAG	1 cut(s)	640
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	3 cut(s)	212, 394, 429
HapII	CCGG	2 cut(s)	357, 431
HgaI	GACGC	2 cut(s)	285, 395
HhaI	GCGC	7 cut(s)	36, 38, 120, 179, 181, 255, 618
Hin1II	CATG	1 cut(s)	647
Hin6I	GCGC	7 cut(s)	34, 36, 118, 177, 179, 253, 616
HinP1I	GCGC	7 cut(s)	34, 36, 118, 177, 179, 253, 616
HincII	GTYRAC	1 cut(s)	641
HindII	GTYRAC	1 cut(s)	641
HinfI	GANTC	3 cut(s)	262, 541, 734
HpaII	CCGG	2 cut(s)	357, 431
HphI	GGTGA	4 cut(s)	134, 521, 705, 711
Hpy166II	GTNNAC	1 cut(s)	641
Hpy188I	TCNGA	3 cut(s)	87, 150, 261
Hpy188III	TCNNGA	4 cut(s)	383, 657, 738, 759
Hpy8I	GTNNAC	1 cut(s)	641
Hpy99I	CGWCG	4 cut(s)	252, 293, 296, 389
HpyAV	CCTTC	4 cut(s)	86, 363, 654, 827
HpyCH4III	ACNGT	4 cut(s)	314, 320, 338, 503
HpyCH4V	TGCA	3 cut(s)	58, 203, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 209, 524, 613
HpyF3I	CTNAG	4 cut(s)	182, 404, 453, 585
Hsp92II	CATG	1 cut(s)	647
HspAI	GCGC	7 cut(s)	34, 36, 118, 177, 179, 253, 616
Kzo9I	GATC	5 cut(s)	46, 304, 400, 408, 787
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	2 cut(s)	472, 659
Lsp1109I	GCAGC	3 cut(s)	123, 187, 530
LweI	GCATC	2 cut(s)	47, 505
MaeI	CTAG	4 cut(s)	161, 197, 390, 764
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	5 cut(s)	48, 306, 402, 410, 789
MboI	GATC	5 cut(s)	46, 304, 400, 408, 787
MboII	GAAGA	5 cut(s)	41, 128, 131, 410, 440
MflI	RGATCY	2 cut(s)	400, 408
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	4 cut(s)	8, 68, 457, 573
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	8 cut(s)	83, 255, 279, 390, 505, 580, 641, 669
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	3 cut(s)	749, 774, 856
MslI	CAYNNNNRTG	1 cut(s)	795
Msp20I	TGGCCA	1 cut(s)	212
MspI	CCGG	2 cut(s)	357, 431
MspR9I	CCNGG	2 cut(s)	214, 431
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	5 cut(s)	36, 179, 273, 301, 630
MwoI	GCNNNNNNNGC	4 cut(s)	117, 209, 524, 613
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	5 cut(s)	46, 304, 400, 408, 787
NlaIII	CATG	1 cut(s)	647
NlaIV	GGNNCC	3 cut(s)	410, 474, 680
NmuCI	GTSAC	1 cut(s)	314
NsbI	TGCGCA	1 cut(s)	617
PauI	GCGCGC	2 cut(s)	34, 177
PciSI	GCTCTTC	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	694
PfeI	GAWTC	2 cut(s)	541, 734
PkrI	GCNGC	4 cut(s)	113, 202, 300, 520
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	678
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	3 cut(s)	410, 474, 680
PspPI	GGNCC	2 cut(s)	428, 678
PspPPI	RGGWCCY	1 cut(s)	678
PsuI	RGATCY	2 cut(s)	400, 408
PteI	GCGCGC	2 cut(s)	34, 177
RsaI	GTAC	3 cut(s)	218, 500, 841
RsaNI	GTAC	3 cut(s)	217, 499, 840
RseI	CAYNNNNRTG	1 cut(s)	795
SalI	GTCGAC	1 cut(s)	639
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	3 cut(s)	749, 774, 856
SatI	GCNGC	4 cut(s)	112, 201, 299, 519
Sau3AI	GATC	5 cut(s)	46, 304, 400, 408, 787
Sau96I	GGNCC	2 cut(s)	428, 678
ScaI	AGTACT	1 cut(s)	841
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	214, 431
SetI	ASST	9 cut(s)	162, 202, 218, 239, 326, 656, 680, 724, 819
SfaNI	GCATC	2 cut(s)	47, 505
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	1 cut(s)	678
SmiMI	CAYNNNNRTG	1 cut(s)	795
SpeI	ACTAGT	1 cut(s)	763
Sse9I	AATT	4 cut(s)	8, 68, 457, 573
SsiI	CCGC	5 cut(s)	61, 266, 273, 299, 605
SspMI	CTAG	4 cut(s)	161, 197, 390, 764
StyD4I	CCNGG	2 cut(s)	212, 429
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	4 cut(s)	314, 320, 338, 503
TaqI	TCGA	3 cut(s)	307, 384, 640
TasI	AATT	4 cut(s)	8, 68, 457, 573
TatI	WGTACW	1 cut(s)	839
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	541, 734
Tru1I	TTAA	3 cut(s)	749, 774, 856
Tru9I	TTAA	3 cut(s)	749, 774, 856
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	3 cut(s)	111, 200, 518
Tsp45I	GTSAC	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	678
XapI	RAATTY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XmaJI	CCTAGG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	640
XspI	CTAG	4 cut(s)	161, 197, 390, 764
ZrmI	AGTACT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.