RLG00000007756

splicing factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
20679890 .. 20683936
4047 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007756

Sequence Viewer

Length: 825 bp
ATGGCCAGGTACCGGAGCCGCAGCCGCAGCCTGAGCAGAAGCTACAGCCCCCCTCGCCGGCGTAGCAGAACTCCGCCACGTGGACGCAAGCGATACGACGACGACGAGCCTCGCGACCGCTACCGTGAGAGCCGCTCTTACCGAGACCGCCGCTCACCGGCTCCGTCTGGCTTGCTCGTTCGCAATCTTCCTCTTGACGCTAGGTCAGACGATCTTAGGATCCCTTTTGAGCGCTTTGGTCCAGTGAAGGATGTGTATCTTCCTAAGAATTACTACACCAGGGAGCCACGGGGCTTTGGTTTTGTGAAGTACCGTTATGCAGAGGACGCAGCTGAAGCAAAGCAACAAATGAACCATAAACTTATTGGTGGACGTGAAATAAGGATTGTTTTTGCTGAGGAGAACAGAAAAACTCCCCAAGAAATGCGCACAACAACTCGTGTAAGTGGAGGAAGCTCTAGAAGAAGAAGAACTCCGCCGAGGTCTCCAAGACGGCAATATCGTTCCTACTCCCGGTCAGTTTCACCTCTTAGGCGCTACTCAAGGGACCATGGAGCTAGGGATCATTATCGTTCCCCCGTGCAGTCTAGATCAATTTCACGATCTCCTTCACCACGCGATGAAAGAGACTACAGGCGGTCCCCAAGTCCAAGGGATAACGGTCAGGATCTGCGTGATGAGAGAGACTACAGTAGGTCCCCAAGTCCAAGGGATAACGGTCAGGATCTGCGTGATGAGAGAGTCTATACACCTAGCAGGTTAAGGAGTCCAAGGGGTAACAGGCGCAGTCCTATGTCACGCTCACGGTCATACAGTCCTCGCTGA

Protein Analysis

275

Amino Acids

32.74

Weight (kDa)

11.43

Isoelectric Point (pI)

115.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 58 - 128 8.3e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 428
Acc36I ACCTGC 1 cut(s) 747
Acc65I GGTACC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 9
AccBSI CCGCTC 2 cut(s) 135, 153
AccII CGCG 2 cut(s) 114, 618
AciI CCGC 9 cut(s) 19, 25, 74, 118, 133, 148, 151, 476, 637
AclWI GGATC 5 cut(s) 214, 227, 570, 675, 732
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 354
AcvI CACGTG 1 cut(s) 80
AfaI GTAC 2 cut(s) 11, 311
AfeI AGCGCT 1 cut(s) 233
AfiI CCNNNNNNNGG 5 cut(s) 12, 57, 80, 157, 513
AhdI GACNNNNNGTC 1 cut(s) 202
AjiI CACGTC 1 cut(s) 374
AjnI CCWGG 2 cut(s) 5, 278
AluBI AGCT 4 cut(s) 42, 332, 456, 557
AluI AGCT 4 cut(s) 42, 332, 456, 557
Alw26I GTCTC 4 cut(s) 138, 489, 621, 678
AlwI GGATC 5 cut(s) 214, 227, 570, 675, 732
AlwNI CAGNNNCTG 2 cut(s) 670, 727
Aor51HI AGCGCT 1 cut(s) 233
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 21, 27, 329
Asp718I GGTACC 1 cut(s) 9
AspLEI GCGC 4 cut(s) 234, 429, 537, 786
AspS9I GGNCC 4 cut(s) 239, 547, 639, 696
AsuC2I CCSGG 1 cut(s) 514
AsuHPI GGTGA 3 cut(s) 147, 516, 603
AvaII GGWCC 4 cut(s) 239, 547, 639, 696
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 219
BanI GGYRCC 1 cut(s) 9
BauI CACGAG 1 cut(s) 438
BbrPI CACGTG 1 cut(s) 80
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 33, 39, 341
BceAI ACGGC 1 cut(s) 509
BciT130I CCWGG 2 cut(s) 7, 280
BcnI CCSGG 1 cut(s) 514
BcoDI GTCTC 4 cut(s) 138, 489, 621, 678
BfaI CTAG 5 cut(s) 201, 459, 558, 588, 753
BfmI CTRYAG 3 cut(s) 43, 631, 688
BfoI RGCGCY 2 cut(s) 235, 538
BfuAI ACCTGC 1 cut(s) 747
BisI GCNGC 7 cut(s) 19, 22, 25, 28, 133, 151, 330
BlsI GCNGC 7 cut(s) 20, 23, 26, 29, 134, 152, 331
Bme1390I CCNGG 3 cut(s) 7, 280, 514
Bme18I GGWCC 4 cut(s) 239, 547, 639, 696
BmeRI GACNNNNNGTC 1 cut(s) 202
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 4 cut(s) 239, 547, 639, 696
BmiI GGNNCC 8 cut(s) 11, 17, 162, 221, 285, 548, 641, 698
BmrFI CCNGG 3 cut(s) 7, 280, 514
BplI GAGNNNNNCTC 2 cut(s) 119, 151
Bpu10I CCTNAGC 2 cut(s) 32, 396
BpuEI CTTGAG 1 cut(s) 526
BpuMI CCSGG 1 cut(s) 514
BsaAI YACGTR 1 cut(s) 80
BsaBI GATNNNNATC 2 cut(s) 255, 567
BsaI GGTCTC 2 cut(s) 138, 489
BsaJI CCNNGG 7 cut(s) 279, 287, 479, 550, 650, 707, 770
BsaWI WCCGGW 1 cut(s) 12
Bsc4I CCNNNNNNNGG 5 cut(s) 12, 57, 80, 157, 513
Bse118I RCCGGY 2 cut(s) 57, 157
Bse1I ACTGG 1 cut(s) 242
Bse8I GATNNNNATC 2 cut(s) 255, 567
BseBI CCWGG 2 cut(s) 7, 280
BseDI CCNNGG 7 cut(s) 279, 287, 479, 550, 650, 707, 770
BseGI GGATG 1 cut(s) 256
BseJI GATNNNNATC 2 cut(s) 255, 567
BseLI CCNNNNNNNGG 5 cut(s) 12, 57, 80, 157, 513
BseMII CTCAG 2 cut(s) 23, 387
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 33, 39, 341
BsgI GTGCAG 1 cut(s) 602
Bsh1236I CGCG 2 cut(s) 114, 618
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 118
BsiSI CCGG 4 cut(s) 13, 58, 158, 514
BslFI GGGAC 3 cut(s) 560, 625, 682
BslI CCNNNNNNNGG 5 cut(s) 12, 57, 80, 157, 513
BsmAI GTCTC 4 cut(s) 138, 489, 621, 678
BsmFI GGGAC 3 cut(s) 560, 625, 682
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 138, 489
Bsp143I GATC 7 cut(s) 211, 219, 562, 590, 602, 667, 724
Bsp19I CCATGG 1 cut(s) 550
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 9 cut(s) 19, 25, 74, 118, 133, 148, 151, 476, 637
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 24, 388
BspFNI CGCG 2 cut(s) 114, 618
BspLI GGNNCC 8 cut(s) 11, 17, 162, 221, 285, 548, 641, 698
BspMI ACCTGC 1 cut(s) 747
BspPI GGATC 5 cut(s) 214, 227, 570, 675, 732
BspT107I GGYRCC 1 cut(s) 9
BspTNI GGTCTC 2 cut(s) 138, 489
BsrBI CCGCTC 2 cut(s) 135, 153
BsrFI RCCGGY 2 cut(s) 57, 157
BsrI ACTGG 1 cut(s) 242
BssAI RCCGGY 2 cut(s) 57, 157
BssECI CCNNGG 7 cut(s) 279, 287, 479, 550, 650, 707, 770
BssMI GATC 7 cut(s) 211, 219, 562, 590, 602, 667, 724
BssSI CACGAG 1 cut(s) 438
BssT1I CCWWGG 4 cut(s) 550, 650, 707, 770
Bst2BI CACGAG 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 7, 280
Bst4CI ACNGT 7 cut(s) 125, 314, 662, 692, 719, 807, 815
BstBAI YACGTR 1 cut(s) 80
BstC8I GCNNGC 3 cut(s) 59, 89, 173
BstDEI CTNAG 5 cut(s) 32, 215, 264, 396, 530
BstDSI CCRYGG 2 cut(s) 287, 550
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 2 cut(s) 114, 618
BstH2I RGCGCY 2 cut(s) 235, 538
BstHHI GCGC 4 cut(s) 234, 429, 537, 786
BstKTI GATC 7 cut(s) 214, 222, 565, 593, 605, 670, 727
BstMAI GTCTC 4 cut(s) 138, 489, 621, 678
BstMBI GATC 7 cut(s) 211, 219, 562, 590, 602, 667, 724
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 7 cut(s) 24, 27, 33, 54, 63, 326, 335
BstNI CCWGG 2 cut(s) 7, 280
BstSCI CCNGG 3 cut(s) 5, 278, 512
BstSFI CTRYAG 3 cut(s) 43, 631, 688
BstUI CGCG 2 cut(s) 114, 618
BstV1I GCAGC 3 cut(s) 33, 39, 341
BstX2I RGATCY 3 cut(s) 219, 667, 724
BstYI RGATCY 3 cut(s) 219, 667, 724
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 287, 550
BtgZI GCGATG 1 cut(s) 633
BtrI CACGTC 1 cut(s) 374
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 249
BtuMI TCGCGA 1 cut(s) 114
BveI ACCTGC 1 cut(s) 747
Cac8I GCNNGC 3 cut(s) 59, 89, 173
CaiI CAGNNNCTG 2 cut(s) 670, 727
CfoI GCGC 4 cut(s) 234, 429, 537, 786
Cfr10I RCCGGY 2 cut(s) 57, 157
Cfr13I GGNCC 4 cut(s) 239, 547, 639, 696
CseI GACGC 3 cut(s) 93, 206, 335
Csp6I GTAC 2 cut(s) 10, 310
CviAII CATG 1 cut(s) 551
CviQI GTAC 2 cut(s) 10, 310
DdeI CTNAG 5 cut(s) 32, 215, 264, 396, 530
DpnI GATC 7 cut(s) 213, 221, 564, 592, 604, 669, 726
DpnII GATC 7 cut(s) 211, 219, 562, 590, 602, 667, 724
DriI GACNNNNNGTC 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 202
EciI GGCGGA 2 cut(s) 63, 465
Eco130I CCWWGG 4 cut(s) 550, 650, 707, 770
Eco31I GGTCTC 2 cut(s) 138, 489
Eco47I GGWCC 4 cut(s) 239, 547, 639, 696
Eco47III AGCGCT 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 354
Eco72I CACGTG 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 696
EcoRII CCWGG 2 cut(s) 5, 278
EcoT14I CCWWGG 4 cut(s) 550, 650, 707, 770
ErhI CCWWGG 4 cut(s) 550, 650, 707, 770
FaeI CATG 1 cut(s) 554
FaiI YATR 6 cut(s) 318, 357, 552, 747, 794, 811
FaqI GGGAC 3 cut(s) 560, 625, 682
FatI CATG 1 cut(s) 550
Fnu4HI GCNGC 7 cut(s) 19, 22, 25, 28, 133, 151, 330
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 7 cut(s) 19, 22, 25, 28, 133, 151, 330
FspAI RTGCGCAY 1 cut(s) 428
FspBI CTAG 5 cut(s) 201, 459, 558, 588, 753
FspI TGCGCA 1 cut(s) 428
GlaI GCGC 4 cut(s) 233, 428, 536, 785
GluI GCNGC 7 cut(s) 19, 22, 25, 28, 133, 151, 330
HaeII RGCGCY 2 cut(s) 235, 538
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 13, 58, 158, 514
HgaI GACGC 3 cut(s) 93, 206, 335
HhaI GCGC 4 cut(s) 234, 429, 537, 786
Hin1II CATG 1 cut(s) 554
Hin6I GCGC 4 cut(s) 232, 427, 535, 784
HinP1I GCGC 4 cut(s) 232, 427, 535, 784
HinfI GANTC 2 cut(s) 741, 766
HpaII CCGG 4 cut(s) 13, 58, 158, 514
HphI GGTGA 3 cut(s) 147, 516, 603
Hpy166II GTNNAC 2 cut(s) 83, 371
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 7 cut(s) 113, 194, 459, 588, 600, 665, 722
Hpy8I GTNNAC 2 cut(s) 83, 371
Hpy99I CGWCG 3 cut(s) 101, 104, 107
HpyAV CCTTC 2 cut(s) 241, 618
HpyCH4III ACNGT 7 cut(s) 125, 314, 662, 692, 719, 807, 815
HpyCH4IV ACGT 2 cut(s) 79, 373
HpyCH4V TGCA 2 cut(s) 320, 583
HpyF10VI GCNNNNNNNGC 7 cut(s) 24, 27, 33, 54, 63, 326, 335
HpyF3I CTNAG 5 cut(s) 32, 215, 264, 396, 530
HpySE526I ACGT 2 cut(s) 79, 373
Hsp92II CATG 1 cut(s) 554
HspAI GCGC 4 cut(s) 232, 427, 535, 784
KpnI GGTACC 1 cut(s) 13
KroI GCCGGC 1 cut(s) 57
KroNI GCCGGC 1 cut(s) 59
Kzo9I GATC 7 cut(s) 211, 219, 562, 590, 602, 667, 724
LmnI GCTCC 4 cut(s) 15, 166, 283, 554
Lsp1109I GCAGC 3 cut(s) 33, 39, 341
MaeI CTAG 5 cut(s) 201, 459, 558, 588, 753
MaeII ACGT 2 cut(s) 79, 373
MaeIII GTNAC 2 cut(s) 776, 795
MalI GATC 7 cut(s) 213, 221, 564, 592, 604, 669, 726
MbiI CCGCTC 2 cut(s) 135, 153
MboI GATC 7 cut(s) 211, 219, 562, 590, 602, 667, 724
MboII GAAGA 5 cut(s) 179, 251, 474, 477, 480
MflI RGATCY 3 cut(s) 219, 667, 724
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 268, 594
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 750, 775
MnlI CCTC 8 cut(s) 63, 120, 201, 316, 391, 443, 474, 537
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 57
MroNI GCCGGC 1 cut(s) 57
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 761
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 4 cut(s) 13, 58, 158, 514
MspR9I CCNGG 3 cut(s) 7, 280, 514
MvaI CCWGG 2 cut(s) 7, 280
MvnI CGCG 2 cut(s) 114, 618
MwoI GCNNNNNNNGC 7 cut(s) 24, 27, 33, 54, 63, 326, 335
NaeI GCCGGC 1 cut(s) 59
NciI CCSGG 1 cut(s) 514
NcoI CCATGG 1 cut(s) 550
NdeII GATC 7 cut(s) 211, 219, 562, 590, 602, 667, 724
NgoMIV GCCGGC 1 cut(s) 57
NlaIII CATG 1 cut(s) 554
NlaIV GGNNCC 8 cut(s) 11, 17, 162, 221, 285, 548, 641, 698
NmeAIII GCCGAG 1 cut(s) 504
NmuCI GTSAC 1 cut(s) 795
NruI TCGCGA 1 cut(s) 114
NsbI TGCGCA 1 cut(s) 428
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 111, 499
PdiI GCCGGC 1 cut(s) 59
PkrI GCNGC 7 cut(s) 20, 23, 26, 29, 134, 152, 331
PleI GAGTC 2 cut(s) 749, 774
PmaCI CACGTG 1 cut(s) 80
PmlI CACGTG 1 cut(s) 80
PpsI GAGTC 2 cut(s) 749, 774
Ppu21I YACGTR 1 cut(s) 80
PpuMI RGGWCCY 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 696
Psp6I CCWGG 2 cut(s) 5, 278
PspCI CACGTG 1 cut(s) 80
PspGI CCWGG 2 cut(s) 5, 278
PspN4I GGNNCC 8 cut(s) 11, 17, 162, 221, 285, 548, 641, 698
PspPI GGNCC 4 cut(s) 239, 547, 639, 696
PspPPI RGGWCCY 1 cut(s) 696
PstNI CAGNNNCTG 2 cut(s) 670, 727
PsuI RGATCY 3 cut(s) 219, 667, 724
PvuII CAGCTG 1 cut(s) 332
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 2 cut(s) 11, 311
RsaNI GTAC 2 cut(s) 10, 310
SaqAI TTAA 1 cut(s) 761
SatI GCNGC 7 cut(s) 19, 22, 25, 28, 133, 151, 330
Sau3AI GATC 7 cut(s) 211, 219, 562, 590, 602, 667, 724
Sau96I GGNCC 4 cut(s) 239, 547, 639, 696
SchI GAGTC 2 cut(s) 750, 775
ScrFI CCNGG 3 cut(s) 7, 280, 514
SfcI CTRYAG 3 cut(s) 43, 631, 688
SgrAI CRCCGGYG 1 cut(s) 57
SinI GGWCC 4 cut(s) 239, 547, 639, 696
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
Sse9I AATT 2 cut(s) 268, 594
SsiI CCGC 9 cut(s) 19, 25, 74, 118, 133, 148, 151, 476, 637
SspMI CTAG 5 cut(s) 201, 459, 558, 588, 753
StyD4I CCNGG 3 cut(s) 5, 278, 512
StyI CCWWGG 4 cut(s) 550, 650, 707, 770
TaaI ACNGT 7 cut(s) 125, 314, 662, 692, 719, 807, 815
TaiI ACGT 2 cut(s) 82, 376
TasI AATT 2 cut(s) 268, 594
TauI GCSGC 4 cut(s) 21, 27, 135, 153
Tru1I TTAA 1 cut(s) 761
Tru9I TTAA 1 cut(s) 761
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 795
TseI GCWGC 3 cut(s) 21, 27, 329
Tsp45I GTSAC 1 cut(s) 795
TspDTI ATGAA 2 cut(s) 365, 636
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 1 cut(s) 249
VpaK11BI GGWCC 4 cut(s) 239, 547, 639, 696
XbaI TCTAGA 2 cut(s) 458, 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XspI CTAG 5 cut(s) 201, 459, 558, 588, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.