Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Reverse (-)

28834083 .. 28834613

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0164500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCACCTTCATTCTCCTGGAGGAGTATTTTGGCAGGGCAGACCAATCCTTGCAGCTGGTATTCAATGGCGAGTGGGAGATGGTACAAGTATAAATATCTGGTTAGATAAGTGGATTCCAAATTGTCCACAGTATTTGGTACATAGGCCGGTAAACTGTCCTTTTGAGCACGTTTCTGAATTAATTGATCCAACTTTTAAGCAGTGGAGTTCTCCTATCATCAATATGTGTTTCAGTCCGGAAATTGCCAGGCAGATTACATGCATCCCTCTTAGCCAAAGAACCATCCAGGACCGCCTTTGTTGGAGTCCAGAATGCAATGGTTTGTATCCTATAAAATCTGCATACTGGATAGCGCGTACAAAAGTGCTAGAAAATGTGTTAGCATCCTCCTCTAATGGTGACCCTTTTAAGGTATTGTGGAAGCGGCTATGGAAAAAACAAGAGAAGTTTGGAAGCCATATCCGCATGGGAGCTGAAAACTCAACATTGATGGCAACTTTCTACCTGACAGCCATAATGGGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

176

Amino Acids

20.16

Weight (kDa)

9.13

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	358
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	3 cut(s)	295, 427, 466
AclWI	GGATC	1 cut(s)	182
AfaI	GTAC	3 cut(s)	85, 141, 361
AfiI	CCNNNNNNNGG	2 cut(s)	412, 522
AgsI	TTSAA	1 cut(s)	65
AjnI	CCWGG	3 cut(s)	16, 248, 288
AluBI	AGCT	2 cut(s)	56, 476
AluI	AGCT	2 cut(s)	56, 476
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	182
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	53
AseI	ATTAAT	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	3 cut(s)	74, 293, 487
BciT130I	CCWGG	3 cut(s)	18, 250, 290
BciVI	GTATCC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	2 cut(s)	54, 428
BlsI	GCNGC	2 cut(s)	55, 429
Bme1390I	CCNGG	3 cut(s)	18, 250, 290
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmrFI	CCNGG	3 cut(s)	18, 250, 290
BmsI	GCATC	2 cut(s)	273, 395
BpmI	CTGGAG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 522
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	3 cut(s)	18, 250, 290
BseGI	GGATG	3 cut(s)	264, 285, 386
BseLI	CCNNNNNNNGG	2 cut(s)	412, 522
BseMI	GCAATG	1 cut(s)	325
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	2 cut(s)	36, 382
BseXI	GCAGC	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	358
BshFI	GGCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	149, 239
BslI	CCNNNNNNNGG	2 cut(s)	412, 522
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	3 cut(s)	295, 427, 466
BspANI	GGCC	1 cut(s)	148
BspEI	TCCGGA	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	358
BspPI	GGATC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	148
BssMI	GATC	1 cut(s)	187
Bst2UI	CCWGG	3 cut(s)	18, 250, 290
Bst4CI	ACNGT	2 cut(s)	132, 158
BstDEI	CTNAG	1 cut(s)	272
BstEII	GGTNACC	1 cut(s)	401
BstF5I	GGATG	3 cut(s)	264, 285, 386
BstFNI	CGCG	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	465
BstNI	CCWGG	3 cut(s)	18, 250, 290
BstNSI	RCATGY	1 cut(s)	264
BstPI	GGTNACC	1 cut(s)	401
BstSCI	CCNGG	3 cut(s)	16, 248, 288
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	65
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	3 cut(s)	264, 285, 386
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	209
CfoI	GCGC	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	3 cut(s)	84, 140, 360
CspCI	CAANNNNNGTGG	2 cut(s)	117, 152
CviAII	CATG	2 cut(s)	261, 469
CviJI	RGCY	7 cut(s)	56, 148, 276, 430, 459, 476, 515
CviKI_1	RGCY	7 cut(s)	56, 148, 276, 430, 459, 476, 515
CviQI	GTAC	3 cut(s)	84, 140, 360
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	292
Eco91I	GGTNACC	1 cut(s)	401
EcoO65I	GGTNACC	1 cut(s)	401
EcoRII	CCWGG	3 cut(s)	16, 248, 288
EcoT22I	ATGCAT	1 cut(s)	266
FaeI	CATG	2 cut(s)	264, 472
FatI	CATG	2 cut(s)	260, 468
Fnu4HI	GCNGC	2 cut(s)	54, 428
FokI	GGATG	3 cut(s)	251, 272, 373
Fsp4HI	GCNGC	2 cut(s)	54, 428
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	2 cut(s)	54, 428
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	2 cut(s)	149, 239
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	2 cut(s)	264, 472
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	2 cut(s)	115, 307
HpaII	CCGG	2 cut(s)	149, 239
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	2 cut(s)	128, 154
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	2 cut(s)	239, 311
Hpy8I	GTNNAC	2 cut(s)	128, 154
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	132, 158
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	4, 53, 264, 318, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	465
HpyF3I	CTNAG	1 cut(s)	272
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	264, 472
HspAI	GCGC	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	473
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	2 cut(s)	273, 395
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	4 cut(s)	121, 179, 183, 243
MlyI	GAGTC	1 cut(s)	316
MmeI	TCCRAC	2 cut(s)	215, 284
MnlI	CCTC	4 cut(s)	14, 279, 400, 403
Mph1103I	ATGCAT	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	238
MseI	TTAA	3 cut(s)	182, 198, 411
MslI	CAYNNNNRTG	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	149, 239
MspR9I	CCNGG	3 cut(s)	18, 250, 290
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	3 cut(s)	18, 250, 290
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	465
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	264, 472
NmuCI	GTSAC	1 cut(s)	401
NsiI	ATGCAT	1 cut(s)	266
NspI	RCATGY	1 cut(s)	264
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	115
PfoI	TCCNGGA	2 cut(s)	16, 288
PkrI	GCNGC	2 cut(s)	55, 429
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
PshBI	ATTAAT	1 cut(s)	182
Psp6I	CCWGG	3 cut(s)	16, 248, 288
PspEI	GGTNACC	1 cut(s)	401
PspGI	CCWGG	3 cut(s)	16, 248, 288
PspPI	GGNCC	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	3 cut(s)	85, 141, 361
RsaNI	GTAC	3 cut(s)	84, 140, 360
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	182, 198, 411
SatI	GCNGC	2 cut(s)	54, 428
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	3 cut(s)	18, 250, 290
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	6 cut(s)	9, 58, 174, 417, 478, 510
SfaNI	GCATC	2 cut(s)	273, 395
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	4 cut(s)	121, 179, 183, 243
SsiI	CCGC	3 cut(s)	295, 427, 466
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	3 cut(s)	16, 248, 288
TaaI	ACNGT	2 cut(s)	132, 158
TaiI	ACGT	1 cut(s)	174
TasI	AATT	4 cut(s)	121, 179, 183, 243
TauI	GCSGC	1 cut(s)	430
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	3 cut(s)	182, 198, 411
Tru9I	TTAA	3 cut(s)	182, 198, 411
TscAI	CASTG	1 cut(s)	209
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	401
TspRI	CASTG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	182
XceI	RCATGY	1 cut(s)	264
XspI	CTAG	1 cut(s)	371
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.