Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Reverse (-)

15084458 .. 15088414

Gene Structure 3957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1177500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCCAGGTACAGAAGCCGAAGCAGAAGCTACAGCCCTCGTCGGCGCAGCCGGACTCCGCCGCGTGGACGCAAGCGATACGACGACAAGCCGCGTGATCGACACCGTGACAGTAGGTCTCACAGAGACCGTAGCTCACCCGCCCCTTCTGGCTTGCTCGTTCGCAATCTCCCTCTCGACGCTAGGCCAGAAGATCTTAGGATCCCATTTGAGCGATTTGGCCCGGTAAAGGATGTGTATCTTCCAAAGAATTACTATACGGGGGAGCCACGGGGTTTTGGGTTTGTGAAGTACCGTTTTGGTGAGGATGCAGCGGAAGCAAAGCAACAATTGAATCATACAGTTATTGGTGGGCGTGAGATAAGAATTGTGTTTGCTGAGGAGAATAGAAAAACTCCTCAAGAAATGCGCACAACTACCCGCGTAAGTCGACATGGAGGAAGCTCCAGAAGGAGAACTTCACCAAGGTCCCCAAGACGGCAATATCGTTCTTACTCGCCGTCACCATCACCATCACCTGTTAGGCGTTACTCAAGGGACCGTCGGGCTAAGGATGATTATCGCTCGCCAGTGCAATCTAGATCAATTTCACGATCTCCCTCACCACGGGATGGAAGAGACTACAGGAGGTCCCCAAGTCCTAGAGAGAATGGTCGAAGTCCTCGTGATGGTAGAGACTACAGGAGGTCCCCAAGTCCCAGGGAGAATGGTCGGAGTATTCGTGATGTGAGGGAGTATGCAGCCAGCAGATCAAGGAGTCCTAGGGGTAACAGTTGCAGTCCACCAAGGTCTTGTTCGCAATCCTACAGTCCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

273

Amino Acids

31.87

Weight (kDa)

11.55

Isoelectric Point (pI)

118.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	52 - 122	1.7e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	430
AccII	CGCG	3 cut(s)	64, 94, 423
AciI	CCGC	6 cut(s)	59, 62, 92, 141, 314, 421
AclWI	GGATC	2 cut(s)	196, 209
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	11, 293
AfiI	CCNNNNNNNGG	6 cut(s)	65, 229, 477, 606, 611, 668
AgsI	TTSAA	1 cut(s)	334
AhdI	GACNNNNNGTC	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	5, 698
AjuI	GAANNNNNNNTTGG	2 cut(s)	778, 810
AluBI	AGCT	3 cut(s)	30, 135, 444
AluI	AGCT	3 cut(s)	30, 135, 444
Alw26I	GTCTC	4 cut(s)	120, 123, 612, 669
AlwI	GGATC	2 cut(s)	196, 209
AoxI	GGCC	3 cut(s)	3, 185, 220
ApeKI	GCWGC	3 cut(s)	48, 311, 740
AspA2I	CCTAGG	1 cut(s)	761
AspLEI	GCGC	2 cut(s)	48, 411
AspS9I	GGNCC	5 cut(s)	221, 468, 538, 630, 687
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	7 cut(s)	129, 314, 453, 495, 501, 507, 594
AvaII	GGWCC	4 cut(s)	468, 538, 630, 687
AvrII	CCTAGG	1 cut(s)	761
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	201
BauI	CACGAG	1 cut(s)	663
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	60, 323, 752
BccI	CCATC	4 cut(s)	514, 520, 605, 662
BceAI	ACGGC	2 cut(s)	484, 494
BciT130I	CCWGG	2 cut(s)	7, 700
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	4 cut(s)	120, 123, 612, 669
BfaI	CTAG	4 cut(s)	183, 579, 642, 762
BfmI	CTRYAG	4 cut(s)	31, 622, 679, 805
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	5 cut(s)	49, 62, 92, 312, 741
BlnI	CCTAGG	1 cut(s)	761
BlsI	GCNGC	5 cut(s)	50, 63, 93, 313, 742
Bme1390I	CCNGG	3 cut(s)	7, 224, 700
Bme18I	GGWCC	4 cut(s)	468, 538, 630, 687
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmgT120I	GGNCC	5 cut(s)	221, 468, 538, 630, 687
BmiI	GGNNCC	6 cut(s)	203, 267, 470, 539, 632, 689
BmrFI	CCNGG	3 cut(s)	7, 224, 700
BmsI	GCATC	1 cut(s)	298
BpmI	CTGGAG	1 cut(s)	430
Bpu10I	CCTNAGC	2 cut(s)	378, 549
BpuEI	CTTGAG	2 cut(s)	384, 517
BpuMI	CCSGG	1 cut(s)	224
BsaBI	GATNNNNATC	2 cut(s)	237, 558
BsaI	GGTCTC	2 cut(s)	120, 123
BsaJI	CCNNGG	7 cut(s)	269, 464, 605, 698, 699, 761, 785
BsaXI	ACNNNNNCTCC	2 cut(s)	706, 736
Bsc4I	CCNNNNNNNGG	6 cut(s)	65, 229, 477, 606, 611, 668
Bse1I	ACTGG	1 cut(s)	569
Bse8I	GATNNNNATC	2 cut(s)	237, 558
BseBI	CCWGG	2 cut(s)	7, 700
BseDI	CCNNGG	7 cut(s)	269, 464, 605, 698, 699, 761, 785
BseGI	GGATG	4 cut(s)	238, 313, 559, 616
BseJI	GATNNNNATC	2 cut(s)	237, 558
BseLI	CCNNNNNNNGG	6 cut(s)	65, 229, 477, 606, 611, 668
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	2 cut(s)	387, 395
BseXI	GCAGC	3 cut(s)	60, 323, 752
Bsh1236I	CGCG	3 cut(s)	64, 94, 423
BshFI	GGCC	3 cut(s)	5, 187, 222
BsiSI	CCGG	2 cut(s)	52, 224
BslFI	GGGAC	5 cut(s)	454, 551, 616, 673, 681
BslI	CCNNNNNNNGG	6 cut(s)	65, 229, 477, 606, 611, 668
BsmAI	GTCTC	4 cut(s)	120, 123, 612, 669
BsmFI	GGGAC	5 cut(s)	454, 551, 616, 673, 681
BsnI	GGCC	3 cut(s)	5, 187, 222
Bso31I	GGTCTC	2 cut(s)	120, 123
Bsp143I	GATC	6 cut(s)	97, 193, 201, 581, 593, 749
BspACI	CCGC	6 cut(s)	59, 62, 92, 141, 314, 421
BspANI	GGCC	3 cut(s)	5, 187, 222
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	3 cut(s)	64, 94, 423
BspLI	GGNNCC	6 cut(s)	203, 267, 470, 539, 632, 689
BspPI	GGATC	2 cut(s)	196, 209
BspTNI	GGTCTC	2 cut(s)	120, 123
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	7 cut(s)	269, 464, 605, 698, 699, 761, 785
BssMI	GATC	6 cut(s)	97, 193, 201, 581, 593, 749
BssSI	CACGAG	1 cut(s)	663
BssT1I	CCWWGG	3 cut(s)	464, 761, 785
Bst2BI	CACGAG	1 cut(s)	663
Bst2UI	CCWGG	2 cut(s)	7, 700
Bst4CI	ACNGT	8 cut(s)	107, 113, 131, 296, 343, 542, 773, 809
Bst6I	CTCTTC	1 cut(s)	610
BstC8I	GCNNGC	4 cut(s)	74, 155, 566, 745
BstDEI	CTNAG	3 cut(s)	197, 378, 549
BstDSI	CCRYGG	2 cut(s)	269, 605
BstF5I	GGATG	4 cut(s)	238, 313, 559, 616
BstFNI	CGCG	3 cut(s)	64, 94, 423
BstHHI	GCGC	2 cut(s)	48, 411
BstKTI	GATC	6 cut(s)	100, 196, 204, 584, 596, 752
BstMAI	GTCTC	4 cut(s)	120, 123, 612, 669
BstMBI	GATC	6 cut(s)	97, 193, 201, 581, 593, 749
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	2 cut(s)	7, 700
BstSCI	CCNGG	3 cut(s)	5, 222, 698
BstSFI	CTRYAG	4 cut(s)	31, 622, 679, 805
BstUI	CGCG	3 cut(s)	64, 94, 423
BstV1I	GCAGC	3 cut(s)	60, 323, 752
BstX2I	RGATCY	2 cut(s)	193, 201
BstYI	RGATCY	2 cut(s)	193, 201
BsuRI	GGCC	3 cut(s)	5, 187, 222
BtgI	CCRYGG	2 cut(s)	269, 605
BtsCI	GGATG	4 cut(s)	238, 313, 559, 616
BtsIMutI	CAGTG	1 cut(s)	576
Cac8I	GCNNGC	4 cut(s)	74, 155, 566, 745
CfoI	GCGC	2 cut(s)	48, 411
Cfr13I	GGNCC	5 cut(s)	221, 468, 538, 630, 687
CseI	GACGC	2 cut(s)	78, 188
Csp6I	GTAC	2 cut(s)	10, 292
CviAII	CATG	1 cut(s)	434
CviQI	GTAC	2 cut(s)	10, 292
DdeI	CTNAG	3 cut(s)	197, 378, 549
DpnI	GATC	6 cut(s)	99, 195, 203, 583, 595, 751
DpnII	GATC	6 cut(s)	97, 193, 201, 581, 593, 749
DriI	GACNNNNNGTC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	610
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	610
EciI	GGCGGA	1 cut(s)	48
Eco130I	CCWWGG	3 cut(s)	464, 761, 785
Eco31I	GGTCTC	2 cut(s)	120, 123
Eco47I	GGWCC	4 cut(s)	468, 538, 630, 687
EcoO109I	RGGNCCY	3 cut(s)	468, 630, 687
EcoRII	CCWGG	2 cut(s)	5, 698
EcoT14I	CCWWGG	3 cut(s)	464, 761, 785
ErhI	CCWWGG	3 cut(s)	464, 761, 785
FaeI	CATG	1 cut(s)	437
FaiI	YATR	4 cut(s)	258, 339, 435, 738
FalI	AAGNNNNNCTT	2 cut(s)	442, 474
FaqI	GGGAC	5 cut(s)	454, 551, 616, 673, 681
FatI	CATG	1 cut(s)	433
FauI	CCCGC	2 cut(s)	148, 428
FblI	GTMKAC	1 cut(s)	430
Fnu4HI	GCNGC	5 cut(s)	49, 62, 92, 312, 741
FokI	GGATG	4 cut(s)	245, 320, 566, 623
Fsp4HI	GCNGC	5 cut(s)	49, 62, 92, 312, 741
FspAI	RTGCGCAY	1 cut(s)	410
FspBI	CTAG	4 cut(s)	183, 579, 642, 762
FspI	TGCGCA	1 cut(s)	410
GlaI	GCGC	2 cut(s)	47, 410
GluI	GCNGC	5 cut(s)	49, 62, 92, 312, 741
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	3 cut(s)	5, 187, 222
HapII	CCGG	2 cut(s)	52, 224
HgaI	GACGC	2 cut(s)	78, 188
HhaI	GCGC	2 cut(s)	48, 411
Hin1II	CATG	1 cut(s)	437
Hin6I	GCGC	2 cut(s)	46, 409
HinP1I	GCGC	2 cut(s)	46, 409
HincII	GTYRAC	1 cut(s)	431
HindII	GTYRAC	1 cut(s)	431
HinfI	GANTC	3 cut(s)	55, 334, 757
HpaII	CCGG	2 cut(s)	52, 224
HphI	GGTGA	7 cut(s)	129, 314, 453, 495, 501, 507, 594
Hpy166II	GTNNAC	3 cut(s)	68, 431, 782
Hpy188I	TCNGA	1 cut(s)	714
Hpy188III	TCNNGA	7 cut(s)	176, 401, 447, 579, 591, 665, 722
Hpy8I	GTNNAC	3 cut(s)	68, 431, 782
Hpy99I	CGWCG	4 cut(s)	45, 86, 182, 546
HpyAV	CCTTC	2 cut(s)	156, 444
HpyCH4III	ACNGT	8 cut(s)	107, 113, 131, 296, 343, 542, 773, 809
HpyCH4V	TGCA	4 cut(s)	311, 574, 740, 777
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	3 cut(s)	197, 378, 549
Hsp92II	CATG	1 cut(s)	437
HspAI	GCGC	2 cut(s)	46, 409
Kzo9I	GATC	6 cut(s)	97, 193, 201, 581, 593, 749
LmnI	GCTCC	2 cut(s)	265, 449
Lsp1109I	GCAGC	3 cut(s)	60, 323, 752
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	4 cut(s)	183, 579, 642, 762
MaeIII	GTNAC	4 cut(s)	107, 501, 527, 767
MalI	GATC	6 cut(s)	99, 195, 203, 583, 595, 751
MboI	GATC	6 cut(s)	97, 193, 201, 581, 593, 749
MboII	GAAGA	3 cut(s)	203, 233, 627
MfeI	CAATTG	1 cut(s)	329
MflI	RGATCY	2 cut(s)	193, 201
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	250, 329, 366, 585
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	49, 766
MmeI	TCCRAC	1 cut(s)	692
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	2 cut(s)	52, 224
MspR9I	CCNGG	3 cut(s)	7, 224, 700
MunI	CAATTG	1 cut(s)	329
MvaI	CCWGG	2 cut(s)	7, 700
MvnI	CGCG	3 cut(s)	64, 94, 423
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	6 cut(s)	97, 193, 201, 581, 593, 749
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	6 cut(s)	203, 267, 470, 539, 632, 689
NmuCI	GTSAC	2 cut(s)	107, 501
NsbI	TGCGCA	1 cut(s)	410
PasI	CCCWGGG	1 cut(s)	699
PcsI	WCGNNNNNNNCGW	3 cut(s)	484, 661, 718
PfeI	GAWTC	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	611
PkrI	GCNGC	5 cut(s)	50, 63, 93, 313, 742
PleI	GAGTC	2 cut(s)	49, 765
PpsI	GAGTC	2 cut(s)	49, 765
PpuMI	RGGWCCY	3 cut(s)	468, 630, 687
Psp5II	RGGWCCY	3 cut(s)	468, 630, 687
Psp6I	CCWGG	2 cut(s)	5, 698
PspGI	CCWGG	2 cut(s)	5, 698
PspN4I	GGNNCC	6 cut(s)	203, 267, 470, 539, 632, 689
PspPI	GGNCC	5 cut(s)	221, 468, 538, 630, 687
PspPPI	RGGWCCY	3 cut(s)	468, 630, 687
PsuI	RGATCY	2 cut(s)	193, 201
RsaI	GTAC	2 cut(s)	11, 293
RsaNI	GTAC	2 cut(s)	10, 292
SalI	GTCGAC	1 cut(s)	429
SatI	GCNGC	5 cut(s)	49, 62, 92, 312, 741
Sau3AI	GATC	6 cut(s)	97, 193, 201, 581, 593, 749
Sau96I	GGNCC	5 cut(s)	221, 468, 538, 630, 687
SchI	GAGTC	2 cut(s)	49, 766
ScrFI	CCNGG	3 cut(s)	7, 224, 700
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	4 cut(s)	31, 622, 679, 805
SinI	GGWCC	4 cut(s)	468, 538, 630, 687
SmlI	CTYRAG	2 cut(s)	399, 532
SmoI	CTYRAG	2 cut(s)	399, 532
Sse9I	AATT	4 cut(s)	250, 329, 366, 585
SsiI	CCGC	6 cut(s)	59, 62, 92, 141, 314, 421
SspMI	CTAG	4 cut(s)	183, 579, 642, 762
StyD4I	CCNGG	3 cut(s)	5, 222, 698
StyI	CCWWGG	3 cut(s)	464, 761, 785
TaaI	ACNGT	8 cut(s)	107, 113, 131, 296, 343, 542, 773, 809
TaqI	TCGA	4 cut(s)	100, 177, 430, 655
TasI	AATT	4 cut(s)	250, 329, 366, 585
TauI	GCSGC	2 cut(s)	64, 94
TfiI	GAWTC	1 cut(s)	334
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	2 cut(s)	107, 501
TseI	GCWGC	3 cut(s)	48, 311, 740
Tsp45I	GTSAC	2 cut(s)	107, 501
TspRI	CASTG	1 cut(s)	576
Van91I	CCANNNNNTGG	1 cut(s)	611
VpaK11BI	GGWCC	4 cut(s)	468, 538, 630, 687
XbaI	TCTAGA	1 cut(s)	578
XmaJI	CCTAGG	1 cut(s)	761
XmiI	GTMKAC	1 cut(s)	430
XspI	CTAG	4 cut(s)	183, 579, 642, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.