Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Forward (+)

20861105 .. 20865986

Gene Structure 4882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCCAGGTATCGTAGCCGCAGCCGTAGCCTAAGTAGAAGCTACAGCCCCCCTCGCCGCCGTAGCAGAACTCCGCCACGTGGACGCAAGCGTTACGACGACGACGAGCCTCGCGACCGCTACCGTGACAGCCGCTCTAACCGAGACCGCCGCTCGCCGGCTCCGTGTGGCTTGCTCGTTCGCAATCTTCCTCTTGACGCTAGGTCAGATGATCTTAGGATCCCTTTTGAGCGCTTTGGTCCAGTGAAGGATGTGTATCTTCCTAAGAATTACTATACCAGGGAGCCACGTGGCTTTGGGTTTGTGAAGTACCGTTATGCAGAGGACGCAGCTGAAGCAAAGCTACAAATGAACCATACACTTATTGGCGGACGTGAAATAAGGATTGTTTTTGCTGAGGAGAACAGAAAAACTCCCCAAGAAATGCGCACAACAACTCGTGTAAGCGGAGGAAGCTCTAGAAGAAGAAGAACTCCACCTAGGTCTCCTAGAGGGCATTATCGTTCTTACTCGCGGGACCATGGAGCTAGGGAGCATTATCGCTCCCCTGTGCAGTCTAGATCAATTTCACGATCTCCTTCACCACGTGATGAAAGAGAATATAGGCGGTCCCATAATCCTATGGAGAATGGACGGAGTCCACATGTTGAGAGAGACTACAGTAGGTCCCCAAGTCCAAGGGAGAATGGTCGGGATCGGCGTGATGAGAGAGTCTATGCACCTAGCAGGTCAAGGAGTCCGAGGGGTAATAATCACAGTCCGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

256

Amino Acids

30.29

Weight (kDa)

11.32

Isoelectric Point (pI)

103.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	58 - 128	1.3e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	428
Acc36I	ACCTGC	1 cut(s)	717
AccBSI	CCGCTC	2 cut(s)	135, 153
AccII	CGCG	2 cut(s)	114, 514
AclWI	GGATC	3 cut(s)	214, 227, 702
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	354
AcvI	CACGTG	3 cut(s)	80, 290, 587
AdeI	CACNNNGTG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	311
AfeI	AGCGCT	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	80, 157
AflIII	ACRYGT	1 cut(s)	643
AhdI	GACNNNNNGTC	1 cut(s)	202
AjiI	CACGTC	1 cut(s)	374
AjnI	CCWGG	2 cut(s)	5, 278
AluBI	AGCT	5 cut(s)	42, 332, 343, 456, 527
AluI	AGCT	5 cut(s)	42, 332, 343, 456, 527
Alw26I	GTCTC	3 cut(s)	138, 489, 648
AlwI	GGATC	3 cut(s)	214, 227, 702
Aor51HI	AGCGCT	1 cut(s)	233
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	21, 329
AspA2I	CCTAGG	1 cut(s)	479
AspLEI	GCGC	2 cut(s)	234, 429
AspS9I	GGNCC	4 cut(s)	239, 517, 609, 666
AsuHPI	GGTGA	1 cut(s)	573
AvaII	GGWCC	4 cut(s)	239, 517, 609, 666
AvrII	CCTAGG	1 cut(s)	479
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	219
BarI	GAAGNNNNNNTAC	2 cut(s)	327, 359
BauI	CACGAG	1 cut(s)	438
BbrPI	CACGTG	3 cut(s)	80, 290, 587
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	33, 341
BceAI	ACGGC	2 cut(s)	9, 45
BciT130I	CCWGG	2 cut(s)	7, 280
BcoDI	GTCTC	3 cut(s)	138, 489, 648
BfaI	CTAG	7 cut(s)	201, 459, 480, 489, 528, 558, 723
BfmI	CTRYAG	2 cut(s)	43, 658
BfoI	RGCGCY	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	717
BisI	GCNGC	6 cut(s)	19, 22, 58, 133, 151, 330
BlnI	CCTAGG	1 cut(s)	479
BlsI	GCNGC	6 cut(s)	20, 23, 59, 134, 152, 331
Bme1390I	CCNGG	2 cut(s)	7, 280
Bme18I	GGWCC	4 cut(s)	239, 517, 609, 666
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmgBI	CACGTC	1 cut(s)	374
BmgT120I	GGNCC	4 cut(s)	239, 517, 609, 666
BmiI	GGNNCC	6 cut(s)	162, 221, 285, 518, 611, 668
BmrFI	CCNGG	2 cut(s)	7, 280
Bpu10I	CCTNAGC	1 cut(s)	396
BsaAI	YACGTR	3 cut(s)	80, 290, 587
BsaBI	GATNNNNATC	1 cut(s)	255
BsaI	GGTCTC	2 cut(s)	138, 489
BsaJI	CCNNGG	5 cut(s)	279, 479, 520, 677, 740
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 157
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	7, 280
BseDI	CCNNGG	5 cut(s)	279, 479, 520, 677, 740
BseGI	GGATG	1 cut(s)	256
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	80, 157
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	2 cut(s)	33, 341
BsgI	GTGCAG	1 cut(s)	572
Bsh1236I	CGCG	2 cut(s)	114, 514
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	3 cut(s)	530, 595, 652
BslI	CCNNNNNNNGG	2 cut(s)	80, 157
BsmAI	GTCTC	3 cut(s)	138, 489, 648
BsmFI	GGGAC	3 cut(s)	530, 595, 652
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	138, 489
Bsp143I	GATC	5 cut(s)	211, 219, 560, 572, 694
Bsp19I	CCATGG	1 cut(s)	520
Bsp68I	TCGCGA	1 cut(s)	114
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	2 cut(s)	114, 514
BspLI	GGNNCC	6 cut(s)	162, 221, 285, 518, 611, 668
BspMI	ACCTGC	1 cut(s)	717
BspPI	GGATC	3 cut(s)	214, 227, 702
BspTNI	GGTCTC	2 cut(s)	138, 489
BsrBI	CCGCTC	2 cut(s)	135, 153
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	5 cut(s)	279, 479, 520, 677, 740
BssMI	GATC	5 cut(s)	211, 219, 560, 572, 694
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	3 cut(s)	479, 520, 677
Bst2BI	CACGAG	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	7, 280
Bst4CI	ACNGT	4 cut(s)	125, 314, 662, 758
BstBAI	YACGTR	3 cut(s)	80, 290, 587
BstC8I	GCNNGC	4 cut(s)	89, 155, 159, 173
BstDEI	CTNAG	4 cut(s)	32, 215, 264, 396
BstDSI	CCRYGG	1 cut(s)	520
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	2 cut(s)	114, 514
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	2 cut(s)	234, 429
BstKTI	GATC	5 cut(s)	214, 222, 563, 575, 697
BstMAI	GTCTC	3 cut(s)	138, 489, 648
BstMBI	GATC	5 cut(s)	211, 219, 560, 572, 694
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 54, 63, 326, 335, 453
BstNI	CCWGG	2 cut(s)	7, 280
BstNSI	RCATGY	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	5, 278
BstSFI	CTRYAG	2 cut(s)	43, 658
BstUI	CGCG	2 cut(s)	114, 514
BstV1I	GCAGC	2 cut(s)	33, 341
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	520
BtrI	CACGTC	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	249
BtuMI	TCGCGA	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	717
Cac8I	GCNNGC	4 cut(s)	89, 155, 159, 173
CfoI	GCGC	2 cut(s)	234, 429
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	4 cut(s)	239, 517, 609, 666
CseI	GACGC	3 cut(s)	93, 206, 335
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	521, 644
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	4 cut(s)	32, 215, 264, 396
DpnI	GATC	5 cut(s)	213, 221, 562, 574, 696
DpnII	GATC	5 cut(s)	211, 219, 560, 572, 694
DraIII	CACNNNGTG	1 cut(s)	587
DriI	GACNNNNNGTC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	202
EciI	GGCGGA	2 cut(s)	63, 384
Eco130I	CCWWGG	3 cut(s)	479, 520, 677
Eco31I	GGTCTC	2 cut(s)	138, 489
Eco47I	GGWCC	4 cut(s)	239, 517, 609, 666
Eco47III	AGCGCT	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	354
Eco72I	CACGTG	3 cut(s)	80, 290, 587
EcoO109I	RGGNCCY	1 cut(s)	666
EcoRII	CCWGG	2 cut(s)	5, 278
EcoT14I	CCWWGG	3 cut(s)	479, 520, 677
ErhI	CCWWGG	3 cut(s)	479, 520, 677
FaeI	CATG	2 cut(s)	524, 647
FaiI	YATR	9 cut(s)	276, 318, 357, 522, 603, 615, 623, 645, 717
FaqI	GGGAC	3 cut(s)	530, 595, 652
FatI	CATG	2 cut(s)	520, 643
FauI	CCCGC	1 cut(s)	507
Fnu4HI	GCNGC	6 cut(s)	19, 22, 58, 133, 151, 330
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	6 cut(s)	19, 22, 58, 133, 151, 330
FspAI	RTGCGCAY	1 cut(s)	428
FspBI	CTAG	7 cut(s)	201, 459, 480, 489, 528, 558, 723
FspI	TGCGCA	1 cut(s)	428
GlaI	GCGC	2 cut(s)	233, 428
GluI	GCNGC	6 cut(s)	19, 22, 58, 133, 151, 330
HaeII	RGCGCY	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	3 cut(s)	93, 206, 335
HhaI	GCGC	2 cut(s)	234, 429
Hin1II	CATG	2 cut(s)	524, 647
Hin6I	GCGC	2 cut(s)	232, 427
HinP1I	GCGC	2 cut(s)	232, 427
HinfI	GANTC	3 cut(s)	637, 711, 736
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	573
Hpy166II	GTNNAC	2 cut(s)	83, 641
Hpy188I	TCNGA	3 cut(s)	208, 741, 762
Hpy188III	TCNNGA	6 cut(s)	113, 194, 459, 558, 570, 692
Hpy8I	GTNNAC	2 cut(s)	83, 641
Hpy99I	CGWCG	3 cut(s)	101, 104, 107
HpyAV	CCTTC	2 cut(s)	241, 588
HpyCH4III	ACNGT	4 cut(s)	125, 314, 662, 758
HpyCH4IV	ACGT	4 cut(s)	79, 289, 373, 586
HpyCH4V	TGCA	3 cut(s)	320, 553, 719
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 54, 63, 326, 335, 453
HpyF3I	CTNAG	4 cut(s)	32, 215, 264, 396
HpySE526I	ACGT	4 cut(s)	79, 289, 373, 586
Hsp92II	CATG	2 cut(s)	524, 647
HspAI	GCGC	2 cut(s)	232, 427
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	211, 219, 560, 572, 694
LmnI	GCTCC	5 cut(s)	166, 283, 524, 532, 548
LpnPI	CCDG	7 cut(s)	19, 171, 255, 265, 292, 561, 712
Lsp1109I	GCAGC	2 cut(s)	33, 341
MaeI	CTAG	7 cut(s)	201, 459, 480, 489, 528, 558, 723
MaeII	ACGT	4 cut(s)	79, 289, 373, 586
MaeIII	GTNAC	2 cut(s)	92, 125
MalI	GATC	5 cut(s)	213, 221, 562, 574, 696
MbiI	CCGCTC	2 cut(s)	135, 153
MboI	GATC	5 cut(s)	211, 219, 560, 572, 694
MboII	GAAGA	5 cut(s)	179, 251, 474, 477, 480
MflI	RGATCY	1 cut(s)	219
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	268, 564
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	646, 720, 745
MnlI	CCTC	8 cut(s)	63, 120, 201, 316, 391, 443, 485, 735
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	7, 280
MvaI	CCWGG	2 cut(s)	7, 280
MvnI	CGCG	2 cut(s)	114, 514
MwoI	GCNNNNNNNGC	6 cut(s)	27, 54, 63, 326, 335, 453
NaeI	GCCGGC	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	520
NdeII	GATC	5 cut(s)	211, 219, 560, 572, 694
NgoMIV	GCCGGC	1 cut(s)	157
NlaIII	CATG	2 cut(s)	524, 647
NlaIV	GGNNCC	6 cut(s)	162, 221, 285, 518, 611, 668
NmuCI	GTSAC	1 cut(s)	125
NruI	TCGCGA	1 cut(s)	114
NsbI	TGCGCA	1 cut(s)	428
NspI	RCATGY	1 cut(s)	647
PciI	ACATGT	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	4 cut(s)	102, 111, 161, 697
PdiI	GCCGGC	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	636
PkrI	GCNGC	6 cut(s)	20, 23, 59, 134, 152, 331
PleI	GAGTC	3 cut(s)	645, 719, 744
PmaCI	CACGTG	3 cut(s)	80, 290, 587
PmlI	CACGTG	3 cut(s)	80, 290, 587
PpsI	GAGTC	3 cut(s)	645, 719, 744
Ppu21I	YACGTR	3 cut(s)	80, 290, 587
PpuMI	RGGWCCY	1 cut(s)	666
PscI	ACATGT	1 cut(s)	643
Psp5II	RGGWCCY	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	5, 278
PspCI	CACGTG	3 cut(s)	80, 290, 587
PspGI	CCWGG	2 cut(s)	5, 278
PspN4I	GGNNCC	6 cut(s)	162, 221, 285, 518, 611, 668
PspPI	GGNCC	4 cut(s)	239, 517, 609, 666
PspPPI	RGGWCCY	1 cut(s)	666
PsuI	RGATCY	1 cut(s)	219
PsyI	GACNNNGTC	1 cut(s)	636
PvuII	CAGCTG	1 cut(s)	332
RruI	TCGCGA	1 cut(s)	114
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SatI	GCNGC	6 cut(s)	19, 22, 58, 133, 151, 330
Sau3AI	GATC	5 cut(s)	211, 219, 560, 572, 694
Sau96I	GGNCC	4 cut(s)	239, 517, 609, 666
SchI	GAGTC	3 cut(s)	646, 720, 745
ScrFI	CCNGG	2 cut(s)	7, 280
SfcI	CTRYAG	2 cut(s)	43, 658
SinI	GGWCC	4 cut(s)	239, 517, 609, 666
Sse9I	AATT	2 cut(s)	268, 564
SspMI	CTAG	7 cut(s)	201, 459, 480, 489, 528, 558, 723
StyD4I	CCNGG	2 cut(s)	5, 278
StyI	CCWWGG	3 cut(s)	479, 520, 677
TaaI	ACNGT	4 cut(s)	125, 314, 662, 758
TaiI	ACGT	4 cut(s)	82, 292, 376, 589
TasI	AATT	2 cut(s)	268, 564
TauI	GCSGC	4 cut(s)	21, 60, 135, 153
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	2 cut(s)	21, 329
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	365, 606
TspGWI	ACGGA	2 cut(s)	153, 649
TspRI	CASTG	1 cut(s)	249
Tth111I	GACNNNGTC	1 cut(s)	636
VpaK11BI	GGWCC	4 cut(s)	239, 517, 609, 666
XbaI	TCTAGA	2 cut(s)	458, 557
XceI	RCATGY	1 cut(s)	647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XmaJI	CCTAGG	1 cut(s)	479
XspI	CTAG	7 cut(s)	201, 459, 480, 489, 528, 558, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.