Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Reverse (-)

14517251 .. 14521058

Gene Structure 3808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1175700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTCAGGTACAGAAGCCGAAGCAGAAGCTACAGCCCTCGTCGACGTAGTCGGACTCCGCCTCGCGGACGCAAGCGATACGACGACGAGCCGCGTGATCGACACCGTGACAGTAGGTCTCACAGAGACCGTAGTTCTCCCGCACCTTCCGGTTTGCTCGTTCGCAATCTCCCTCTCGACGCTAGGCCAGAAGATCTTAGGATCCCATTTGAGCGATTTGGCCCAGTAAAGGATGTGTATCTTCCTAAGAATTACTACACAGGGGAGCCACGGGGTTTTGGGTTTGTGAAGTACCGTTATGGTGAGGATGCAGCAGAAGCAAAGCAACAACTGAATCATACAGTTATTGGTGGGCGTGAGATAAGAATTGTGTTTGCTGAGGAGAATAGAAAAACTCCGCAAGAAATGCGCACAACTACTCGCGTAAGTCGACATGGAGGAAGCTCCAGAAGGAGAACTCCACCGAGGTCCCCAAGACGGCAATATCGTTCTTACTCGCCATCACCATCACCTGTTAGGCGTGATTCAAGGGACCATCGGGCTAGGGATGATTATCGCTCGCCAGTACAGTCTAGATCAATTTCACGATCACCCTCACCACGGGATGGAAGAGACTACAGGAGGTCCCCAAGTCCGAGAGAGAAGGGTCGAAGTGCGCGTGAAGTTAGAGACTACAGGAGGTCCCCAAGTCCGAGGGTGAATGGTCGGAGTCCTCGTGATGTGAGAGAGTATGCATCCAGCAGATCAAGGAGTCCTAGGGGTGGCAGTCGCAGTCCGTCAAGGTCTCGTTCGCGATCATACAGTCCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

271

Amino Acids

31.78

Weight (kDa)

11.65

Isoelectric Point (pI)

120.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	52 - 122	3.4e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	605
AccI	GTMKAC	2 cut(s)	43, 430
AccII	CGCG	5 cut(s)	66, 94, 423, 658, 793
AciI	CCGC	5 cut(s)	59, 66, 92, 141, 398
AclWI	GGATC	2 cut(s)	196, 209
AfaI	GTAC	3 cut(s)	11, 293, 567
AfiI	CCNNNNNNNGG	6 cut(s)	65, 229, 477, 600, 605, 761
AgsI	TTSAA	1 cut(s)	528
AhdI	GACNNNNNGTC	1 cut(s)	115
AluBI	AGCT	2 cut(s)	30, 444
AluI	AGCT	2 cut(s)	30, 444
Alw26I	GTCTC	5 cut(s)	120, 123, 606, 663, 789
AlwI	GGATC	2 cut(s)	196, 209
AoxI	GGCC	2 cut(s)	185, 220
ApeKI	GCWGC	1 cut(s)	311
AspA2I	CCTAGG	1 cut(s)	755
AspLEI	GCGC	2 cut(s)	411, 658
AspS9I	GGNCC	5 cut(s)	221, 468, 532, 624, 681
AsuHPI	GGTGA	6 cut(s)	314, 495, 501, 582, 588, 709
AvaII	GGWCC	4 cut(s)	468, 532, 624, 681
AvrII	CCTAGG	1 cut(s)	755
BamHI	GGATCC	1 cut(s)	201
BauI	CACGAG	1 cut(s)	714
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	4 cut(s)	508, 514, 543, 599
BceAI	ACGGC	1 cut(s)	494
BcoDI	GTCTC	5 cut(s)	120, 123, 606, 663, 789
BfaI	CTAG	4 cut(s)	183, 543, 573, 756
BfmI	CTRYAG	3 cut(s)	31, 616, 673
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	2 cut(s)	92, 312
BlnI	CCTAGG	1 cut(s)	755
BlsI	GCNGC	2 cut(s)	93, 313
Bme18I	GGWCC	4 cut(s)	468, 532, 624, 681
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmgT120I	GGNCC	5 cut(s)	221, 468, 532, 624, 681
BmiI	GGNNCC	6 cut(s)	203, 267, 470, 533, 626, 683
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	2 cut(s)	298, 743
BmuI	ACTGGG	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	378
BsaBI	GATNNNNATC	2 cut(s)	237, 552
BsaI	GGTCTC	3 cut(s)	120, 123, 789
BsaJI	CCNNGG	5 cut(s)	269, 464, 599, 692, 755
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	700, 730
Bsc4I	CCNNNNNNNGG	6 cut(s)	65, 229, 477, 600, 605, 761
Bse1I	ACTGG	2 cut(s)	224, 563
Bse8I	GATNNNNATC	2 cut(s)	237, 552
BseDI	CCNNGG	5 cut(s)	269, 464, 599, 692, 755
BseGI	GGATG	5 cut(s)	238, 313, 553, 610, 734
BseJI	GATNNNNATC	2 cut(s)	237, 552
BseLI	CCNNNNNNNGG	6 cut(s)	65, 229, 477, 600, 605, 761
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	224, 563
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	323
Bsh1236I	CGCG	5 cut(s)	66, 94, 423, 658, 793
BshFI	GGCC	2 cut(s)	187, 222
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	4 cut(s)	454, 545, 610, 667
BslI	CCNNNNNNNGG	6 cut(s)	65, 229, 477, 600, 605, 761
BsmAI	GTCTC	5 cut(s)	120, 123, 606, 663, 789
BsmFI	GGGAC	4 cut(s)	454, 545, 610, 667
BsnI	GGCC	2 cut(s)	187, 222
Bso31I	GGTCTC	3 cut(s)	120, 123, 789
Bsp143I	GATC	7 cut(s)	97, 193, 201, 575, 587, 743, 794
Bsp68I	TCGCGA	1 cut(s)	793
BspACI	CCGC	5 cut(s)	59, 66, 92, 141, 398
BspANI	GGCC	2 cut(s)	187, 222
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	5 cut(s)	66, 94, 423, 658, 793
BspLI	GGNNCC	6 cut(s)	203, 267, 470, 533, 626, 683
BspPI	GGATC	2 cut(s)	196, 209
BspTNI	GGTCTC	3 cut(s)	120, 123, 789
BsrI	ACTGG	2 cut(s)	224, 563
BssECI	CCNNGG	5 cut(s)	269, 464, 599, 692, 755
BssMI	GATC	7 cut(s)	97, 193, 201, 575, 587, 743, 794
BssSI	CACGAG	1 cut(s)	714
BssT1I	CCWWGG	1 cut(s)	755
Bst2BI	CACGAG	1 cut(s)	714
Bst4CI	ACNGT	7 cut(s)	107, 113, 131, 296, 343, 570, 803
Bst6I	CTCTTC	1 cut(s)	604
BstAPI	GCANNNNNTGC	1 cut(s)	406
BstC8I	GCNNGC	2 cut(s)	74, 560
BstDEI	CTNAG	3 cut(s)	197, 246, 378
BstDSI	CCRYGG	2 cut(s)	269, 599
BstF5I	GGATG	5 cut(s)	238, 313, 553, 610, 734
BstFNI	CGCG	5 cut(s)	66, 94, 423, 658, 793
BstHHI	GCGC	2 cut(s)	411, 658
BstKTI	GATC	7 cut(s)	100, 196, 204, 578, 590, 746, 797
BstMAI	GTCTC	5 cut(s)	120, 123, 606, 663, 789
BstMBI	GATC	7 cut(s)	97, 193, 201, 575, 587, 743, 794
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 406
BstSFI	CTRYAG	3 cut(s)	31, 616, 673
BstUI	CGCG	5 cut(s)	66, 94, 423, 658, 793
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	2 cut(s)	193, 201
BstYI	RGATCY	2 cut(s)	193, 201
BsuRI	GGCC	2 cut(s)	187, 222
BtgI	CCRYGG	2 cut(s)	269, 599
BtsCI	GGATG	5 cut(s)	238, 313, 553, 610, 734
BtuMI	TCGCGA	1 cut(s)	793
Cac8I	GCNNGC	2 cut(s)	74, 560
CfoI	GCGC	2 cut(s)	411, 658
Cfr13I	GGNCC	5 cut(s)	221, 468, 532, 624, 681
CseI	GACGC	2 cut(s)	78, 188
Csp6I	GTAC	3 cut(s)	10, 292, 566
CviAII	CATG	1 cut(s)	434
CviJI	RGCY	9 cut(s)	18, 30, 36, 91, 187, 222, 268, 444, 542
CviKI_1	RGCY	9 cut(s)	18, 30, 36, 91, 187, 222, 268, 444, 542
CviQI	GTAC	3 cut(s)	10, 292, 566
DdeI	CTNAG	3 cut(s)	197, 246, 378
DpnI	GATC	7 cut(s)	99, 195, 203, 577, 589, 745, 796
DpnII	GATC	7 cut(s)	97, 193, 201, 575, 587, 743, 794
DriI	GACNNNNNGTC	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	604
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	604
EciI	GGCGGA	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	755
Eco31I	GGTCTC	3 cut(s)	120, 123, 789
Eco47I	GGWCC	4 cut(s)	468, 532, 624, 681
EcoO109I	RGGNCCY	3 cut(s)	468, 624, 681
EcoT14I	CCWWGG	1 cut(s)	755
EcoT22I	ATGCAT	1 cut(s)	736
ErhI	CCWWGG	1 cut(s)	755
FaeI	CATG	1 cut(s)	437
FaiI	YATR	5 cut(s)	300, 339, 435, 732, 799
FaqI	GGGAC	4 cut(s)	454, 545, 610, 667
FatI	CATG	1 cut(s)	433
FauI	CCCGC	1 cut(s)	148
FblI	GTMKAC	2 cut(s)	43, 430
Fnu4HI	GCNGC	2 cut(s)	92, 312
FokI	GGATG	5 cut(s)	245, 320, 560, 617, 721
Fsp4HI	GCNGC	2 cut(s)	92, 312
FspAI	RTGCGCAY	1 cut(s)	410
FspBI	CTAG	4 cut(s)	183, 543, 573, 756
FspI	TGCGCA	1 cut(s)	410
GlaI	GCGC	2 cut(s)	410, 657
GluI	GCNGC	2 cut(s)	92, 312
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	187, 222
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	2 cut(s)	78, 188
HhaI	GCGC	2 cut(s)	411, 658
Hin1II	CATG	1 cut(s)	437
Hin6I	GCGC	2 cut(s)	409, 656
HinP1I	GCGC	2 cut(s)	409, 656
HincII	GTYRAC	2 cut(s)	44, 431
HindII	GTYRAC	2 cut(s)	44, 431
HinfI	GANTC	5 cut(s)	55, 334, 524, 709, 751
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	6 cut(s)	314, 495, 501, 582, 588, 709
Hpy166II	GTNNAC	2 cut(s)	44, 431
Hpy188I	TCNGA	4 cut(s)	54, 636, 693, 708
Hpy188III	TCNNGA	6 cut(s)	176, 447, 573, 585, 716, 792
Hpy8I	GTNNAC	2 cut(s)	44, 431
Hpy99I	CGWCG	5 cut(s)	45, 48, 86, 89, 182
HpyAV	CCTTC	3 cut(s)	156, 444, 637
HpyCH4III	ACNGT	7 cut(s)	107, 113, 131, 296, 343, 570, 803
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	311, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 406
HpyF3I	CTNAG	3 cut(s)	197, 246, 378
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	437
HspAI	GCGC	2 cut(s)	409, 656
Kzo9I	GATC	7 cut(s)	97, 193, 201, 575, 587, 743, 794
LmnI	GCTCC	2 cut(s)	265, 449
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	2 cut(s)	298, 743
MaeI	CTAG	4 cut(s)	183, 543, 573, 756
MaeII	ACGT	1 cut(s)	46
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	7 cut(s)	99, 195, 203, 577, 589, 745, 796
MboI	GATC	7 cut(s)	97, 193, 201, 575, 587, 743, 794
MboII	GAAGA	3 cut(s)	203, 233, 621
MflI	RGATCY	2 cut(s)	193, 201
MluCI	AATT	3 cut(s)	250, 366, 579
MlyI	GAGTC	3 cut(s)	49, 718, 760
MmeI	TCCRAC	2 cut(s)	32, 686
Mph1103I	ATGCAT	1 cut(s)	736
MspI	CCGG	1 cut(s)	150
MvnI	CGCG	5 cut(s)	66, 94, 423, 658, 793
MwoI	GCNNNNNNNGC	2 cut(s)	317, 406
NdeII	GATC	7 cut(s)	97, 193, 201, 575, 587, 743, 794
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	6 cut(s)	203, 267, 470, 533, 626, 683
NmuCI	GTSAC	1 cut(s)	107
NruI	TCGCGA	1 cut(s)	793
NsbI	TGCGCA	1 cut(s)	410
NsiI	ATGCAT	1 cut(s)	736
PcsI	WCGNNNNNNNCGW	4 cut(s)	427, 484, 655, 712
PfeI	GAWTC	2 cut(s)	334, 524
PflFI	GACNNNGTC	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	605
PkrI	GCNGC	2 cut(s)	93, 313
PleI	GAGTC	3 cut(s)	49, 717, 759
PpsI	GAGTC	3 cut(s)	49, 717, 759
PpuMI	RGGWCCY	3 cut(s)	468, 624, 681
Psp5II	RGGWCCY	3 cut(s)	468, 624, 681
PspN4I	GGNNCC	6 cut(s)	203, 267, 470, 533, 626, 683
PspPI	GGNCC	5 cut(s)	221, 468, 532, 624, 681
PspPPI	RGGWCCY	3 cut(s)	468, 624, 681
PsuI	RGATCY	2 cut(s)	193, 201
PsyI	GACNNNGTC	1 cut(s)	48
RruI	TCGCGA	1 cut(s)	793
RsaI	GTAC	3 cut(s)	11, 293, 567
RsaNI	GTAC	3 cut(s)	10, 292, 566
SalI	GTCGAC	2 cut(s)	42, 429
SatI	GCNGC	2 cut(s)	92, 312
Sau3AI	GATC	7 cut(s)	97, 193, 201, 575, 587, 743, 794
Sau96I	GGNCC	5 cut(s)	221, 468, 532, 624, 681
SchI	GAGTC	3 cut(s)	49, 718, 760
SfaNI	GCATC	2 cut(s)	298, 743
SfcI	CTRYAG	3 cut(s)	31, 616, 673
SgrDI	CGTCGACG	1 cut(s)	42
SinI	GGWCC	4 cut(s)	468, 532, 624, 681
Sse9I	AATT	3 cut(s)	250, 366, 579
SsiI	CCGC	5 cut(s)	59, 66, 92, 141, 398
SspMI	CTAG	4 cut(s)	183, 543, 573, 756
StyI	CCWWGG	1 cut(s)	755
TaaI	ACNGT	7 cut(s)	107, 113, 131, 296, 343, 570, 803
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	5 cut(s)	43, 100, 177, 430, 649
TasI	AATT	3 cut(s)	250, 366, 579
TatI	WGTACW	1 cut(s)	565
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	2 cut(s)	334, 524
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	765
Tth111I	GACNNNGTC	1 cut(s)	48
Van91I	CCANNNNNTGG	1 cut(s)	605
VpaK11BI	GGWCC	4 cut(s)	468, 532, 624, 681
XbaI	TCTAGA	1 cut(s)	572
XmaJI	CCTAGG	1 cut(s)	755
XmiI	GTMKAC	2 cut(s)	43, 430
XspI	CTAG	4 cut(s)	183, 543, 573, 756
Zsp2I	ATGCAT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.