Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Forward (+)

44234368 .. 44237813

Gene Structure 3446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCCAGGTACCGGAGCCGCAGCCGCAGCCTGAGCAGAAGCTACAGCCCCCTCGCCGGCGTAGCAGAACTCCGCCACGTGGAAGCAAGCGATACGACGACGACGAGCCTCGCGACCGCTACCGTGACAGCCGCTCTTACCGAGACCGCCGCTCACCGGCTCCGTCTGGCTTGCTCGTTCGCAATCTTCCTCTTGACGCTAGTGGAGGAAGCTCTAGAAGAAGAAGAACTCCACCTAGGTCTCCAAGACGGCAATATCGTTCCTACTCCCGGTCAGTTTCACCTCTTAGGCGCGACTCAAGATTTATTCCATAAAGGTAATGTTGTATGTATTTCTTCCATTGGCAGGGACCATGGAGCTAGGGATCATTATCGTTCCCCTGTGCAGTCTAGATCAATTTCACGATCTCCTTCACCACGCGATGAAAGAGACTACAGGCGGTCCCCAAGTCCTAGGGAGAATGGACGGAGTCCACGTGATGAGAGAGACTACAGTAGGTACCCAAGTCCAAGGGATAACGGTCAGGATCTGCGTGATGAGAGAGTCAATGCACCTAGCAGGTTAAGGAGTCCAAGGGGCAATAGGCACAGTCCTATGTCACGCTCACGGTCATACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

206

Amino Acids

23.21

Weight (kDa)

10.15

Isoelectric Point (pI)

92.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	549
Acc65I	GGTACC	2 cut(s)	9, 498
AccB1I	GGYRCC	2 cut(s)	9, 498
AccBSI	CCGCTC	2 cut(s)	134, 152
AccII	CGCG	3 cut(s)	113, 293, 420
AciI	CCGC	8 cut(s)	19, 25, 73, 117, 132, 147, 150, 439
AclWI	GGATC	2 cut(s)	372, 534
AcoI	YGGCCR	1 cut(s)	3
AcvI	CACGTG	2 cut(s)	79, 476
AfaI	GTAC	2 cut(s)	11, 500
AfiI	CCNNNNNNNGG	6 cut(s)	12, 56, 79, 156, 269, 345
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	3 cut(s)	42, 212, 359
AluI	AGCT	3 cut(s)	42, 212, 359
Alw26I	GTCTC	4 cut(s)	137, 245, 423, 480
AlwI	GGATC	2 cut(s)	372, 534
AlwNI	CAGNNNCTG	1 cut(s)	529
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	21, 27
Asp718I	GGTACC	2 cut(s)	9, 498
AspA2I	CCTAGG	2 cut(s)	235, 452
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	349, 441
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	146, 272, 405
AvaII	GGWCC	2 cut(s)	349, 441
AvrII	CCTAGG	2 cut(s)	235, 452
BaeI	ACNNNNGTAYC	2 cut(s)	490, 523
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	9, 498
BbrPI	CACGTG	2 cut(s)	79, 476
BbvI	GCAGC	2 cut(s)	33, 39
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	4 cut(s)	137, 245, 423, 480
BfaI	CTAG	7 cut(s)	200, 215, 236, 360, 390, 453, 555
BfmI	CTRYAG	3 cut(s)	43, 433, 490
BfuAI	ACCTGC	1 cut(s)	549
BisI	GCNGC	6 cut(s)	19, 22, 25, 28, 132, 150
BlnI	CCTAGG	2 cut(s)	235, 452
BlsI	GCNGC	6 cut(s)	20, 23, 26, 29, 133, 151
Bme1390I	CCNGG	2 cut(s)	7, 270
Bme18I	GGWCC	2 cut(s)	349, 441
BmgT120I	GGNCC	2 cut(s)	349, 441
BmiI	GGNNCC	6 cut(s)	11, 17, 161, 350, 443, 500
BmrFI	CCNGG	2 cut(s)	7, 270
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	270
BsaAI	YACGTR	2 cut(s)	79, 476
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	2 cut(s)	137, 245
BsaJI	CCNNGG	5 cut(s)	235, 352, 452, 509, 572
BsaWI	WCCGGW	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	6 cut(s)	12, 56, 79, 156, 269, 345
Bse118I	RCCGGY	2 cut(s)	56, 156
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	5 cut(s)	235, 352, 452, 509, 572
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	6 cut(s)	12, 56, 79, 156, 269, 345
BseMII	CTCAG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	33, 39
BsgI	GTGCAG	1 cut(s)	404
Bsh1236I	CGCG	3 cut(s)	113, 293, 420
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	9, 498
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	4 cut(s)	13, 57, 157, 270
BslFI	GGGAC	2 cut(s)	362, 427
BslI	CCNNNNNNNGG	6 cut(s)	12, 56, 79, 156, 269, 345
BsmAI	GTCTC	4 cut(s)	137, 245, 423, 480
BsmFI	GGGAC	2 cut(s)	362, 427
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	137, 245
Bsp143I	GATC	4 cut(s)	364, 392, 404, 526
Bsp19I	CCATGG	1 cut(s)	352
Bsp68I	TCGCGA	1 cut(s)	113
BspACI	CCGC	8 cut(s)	19, 25, 73, 117, 132, 147, 150, 439
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	3 cut(s)	113, 293, 420
BspLI	GGNNCC	6 cut(s)	11, 17, 161, 350, 443, 500
BspMI	ACCTGC	1 cut(s)	549
BspPI	GGATC	2 cut(s)	372, 534
BspT107I	GGYRCC	2 cut(s)	9, 498
BspTNI	GGTCTC	2 cut(s)	137, 245
BsrBI	CCGCTC	2 cut(s)	134, 152
BsrFI	RCCGGY	2 cut(s)	56, 156
BssAI	RCCGGY	2 cut(s)	56, 156
BssECI	CCNNGG	5 cut(s)	235, 352, 452, 509, 572
BssMI	GATC	4 cut(s)	364, 392, 404, 526
BssT1I	CCWWGG	5 cut(s)	235, 352, 452, 509, 572
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	5 cut(s)	124, 494, 521, 590, 609
BstBAI	YACGTR	2 cut(s)	79, 476
BstC8I	GCNNGC	3 cut(s)	58, 88, 172
BstDEI	CTNAG	2 cut(s)	32, 286
BstDSI	CCRYGG	1 cut(s)	352
BstFNI	CGCG	3 cut(s)	113, 293, 420
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	4 cut(s)	367, 395, 407, 529
BstMAI	GTCTC	4 cut(s)	137, 245, 423, 480
BstMBI	GATC	4 cut(s)	364, 392, 404, 526
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 27, 33, 62
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	5, 268
BstSFI	CTRYAG	3 cut(s)	43, 433, 490
BstUI	CGCG	3 cut(s)	113, 293, 420
BstV1I	GCAGC	2 cut(s)	33, 39
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	352
BtgZI	GCGATG	1 cut(s)	435
BtuMI	TCGCGA	1 cut(s)	113
BveI	ACCTGC	1 cut(s)	549
Cac8I	GCNNGC	3 cut(s)	58, 88, 172
CaiI	CAGNNNCTG	1 cut(s)	529
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	2 cut(s)	56, 156
Cfr13I	GGNCC	2 cut(s)	349, 441
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	2 cut(s)	10, 499
CviAII	CATG	1 cut(s)	353
CviQI	GTAC	2 cut(s)	10, 499
DdeI	CTNAG	2 cut(s)	32, 286
DpnI	GATC	4 cut(s)	366, 394, 406, 528
DpnII	GATC	4 cut(s)	364, 392, 404, 526
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	62
Eco130I	CCWWGG	5 cut(s)	235, 352, 452, 509, 572
Eco31I	GGTCTC	2 cut(s)	137, 245
Eco47I	GGWCC	2 cut(s)	349, 441
Eco72I	CACGTG	2 cut(s)	79, 476
EcoRII	CCWGG	1 cut(s)	5
EcoT14I	CCWWGG	5 cut(s)	235, 352, 452, 509, 572
ErhI	CCWWGG	5 cut(s)	235, 352, 452, 509, 572
FaeI	CATG	1 cut(s)	356
FaiI	YATR	5 cut(s)	312, 328, 354, 596, 613
FaqI	GGGAC	2 cut(s)	362, 427
FatI	CATG	1 cut(s)	352
Fnu4HI	GCNGC	6 cut(s)	19, 22, 25, 28, 132, 150
Fsp4HI	GCNGC	6 cut(s)	19, 22, 25, 28, 132, 150
FspBI	CTAG	7 cut(s)	200, 215, 236, 360, 390, 453, 555
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	6 cut(s)	19, 22, 25, 28, 132, 150
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	13, 57, 157, 270
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	356
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	4 cut(s)	295, 469, 543, 568
HpaII	CCGG	4 cut(s)	13, 57, 157, 270
HphI	GGTGA	3 cut(s)	146, 272, 405
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188III	TCNNGA	7 cut(s)	112, 193, 215, 299, 390, 402, 524
Hpy8I	GTNNAC	1 cut(s)	473
Hpy99I	CGWCG	3 cut(s)	100, 103, 106
HpyAV	CCTTC	1 cut(s)	420
HpyCH4III	ACNGT	5 cut(s)	124, 494, 521, 590, 609
HpyCH4IV	ACGT	2 cut(s)	78, 475
HpyCH4V	TGCA	2 cut(s)	385, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 27, 33, 62
HpyF3I	CTNAG	2 cut(s)	32, 286
HpySE526I	ACGT	2 cut(s)	78, 475
Hsp92II	CATG	1 cut(s)	356
HspAI	GCGC	1 cut(s)	291
KpnI	GGTACC	2 cut(s)	13, 502
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Kzo9I	GATC	4 cut(s)	364, 392, 404, 526
LmnI	GCTCC	3 cut(s)	15, 165, 356
Lsp1109I	GCAGC	2 cut(s)	33, 39
MaeI	CTAG	7 cut(s)	200, 215, 236, 360, 390, 453, 555
MaeII	ACGT	2 cut(s)	78, 475
MaeIII	GTNAC	2 cut(s)	124, 597
MalI	GATC	4 cut(s)	366, 394, 406, 528
MbiI	CCGCTC	2 cut(s)	134, 152
MboI	GATC	4 cut(s)	364, 392, 404, 526
MboII	GAAGA	5 cut(s)	178, 230, 233, 236, 327
MflI	RGATCY	1 cut(s)	526
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	396
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	289, 478, 552, 577
MnlI	CCTC	5 cut(s)	62, 119, 199, 200, 293
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	13, 57, 157, 270
MspR9I	CCNGG	2 cut(s)	7, 270
MvaI	CCWGG	1 cut(s)	7
MvnI	CGCG	3 cut(s)	113, 293, 420
MwoI	GCNNNNNNNGC	4 cut(s)	24, 27, 33, 62
NaeI	GCCGGC	1 cut(s)	58
NciI	CCSGG	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	352
NdeII	GATC	4 cut(s)	364, 392, 404, 526
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	6 cut(s)	11, 17, 161, 350, 443, 500
NmuCI	GTSAC	2 cut(s)	124, 597
NruI	TCGCGA	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	4 cut(s)	101, 110, 255, 472
PdiI	GCCGGC	1 cut(s)	58
PflFI	GACNNNGTC	1 cut(s)	468
PkrI	GCNGC	6 cut(s)	20, 23, 26, 29, 133, 151
PleI	GAGTC	4 cut(s)	289, 477, 551, 576
PmaCI	CACGTG	2 cut(s)	79, 476
PmlI	CACGTG	2 cut(s)	79, 476
PpsI	GAGTC	4 cut(s)	289, 477, 551, 576
Ppu21I	YACGTR	2 cut(s)	79, 476
Psp6I	CCWGG	1 cut(s)	5
PspCI	CACGTG	2 cut(s)	79, 476
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	6 cut(s)	11, 17, 161, 350, 443, 500
PspPI	GGNCC	2 cut(s)	349, 441
PstNI	CAGNNNCTG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	526
PsyI	GACNNNGTC	1 cut(s)	468
RruI	TCGCGA	1 cut(s)	113
RsaI	GTAC	2 cut(s)	11, 500
RsaNI	GTAC	2 cut(s)	10, 499
SaqAI	TTAA	1 cut(s)	563
SatI	GCNGC	6 cut(s)	19, 22, 25, 28, 132, 150
Sau3AI	GATC	4 cut(s)	364, 392, 404, 526
Sau96I	GGNCC	2 cut(s)	349, 441
SchI	GAGTC	4 cut(s)	289, 478, 552, 577
ScrFI	CCNGG	2 cut(s)	7, 270
SfcI	CTRYAG	3 cut(s)	43, 433, 490
SgrAI	CRCCGGYG	1 cut(s)	56
SinI	GGWCC	2 cut(s)	349, 441
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	1 cut(s)	396
SsiI	CCGC	8 cut(s)	19, 25, 73, 117, 132, 147, 150, 439
SspMI	CTAG	7 cut(s)	200, 215, 236, 360, 390, 453, 555
StyD4I	CCNGG	2 cut(s)	5, 268
StyI	CCWWGG	5 cut(s)	235, 352, 452, 509, 572
TaaI	ACNGT	5 cut(s)	124, 494, 521, 590, 609
TaiI	ACGT	2 cut(s)	81, 478
TasI	AATT	1 cut(s)	396
TauI	GCSGC	4 cut(s)	21, 27, 134, 152
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
TseFI	GTSAC	2 cut(s)	124, 597
TseI	GCWGC	2 cut(s)	21, 27
Tsp45I	GTSAC	2 cut(s)	124, 597
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	2 cut(s)	152, 481
Tth111I	GACNNNGTC	1 cut(s)	468
VpaK11BI	GGWCC	2 cut(s)	349, 441
XbaI	TCTAGA	2 cut(s)	214, 389
XmaJI	CCTAGG	2 cut(s)	235, 452
XspI	CTAG	7 cut(s)	200, 215, 236, 360, 390, 453, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.