Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009913.1

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Forward (+)

59 .. 2995

Gene Structure 2937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009913.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgatgctgcaatttcaagttatattaattaagctattccaatatagggagccacggggctttggctttgtgaagtaccgttatgcagaggacgcagcggaagcaaagcaacaaatgaaccataaacttattggtggacgtgaaataaggattgtttttgctgaggagaacagaaaaactccccaagaaatgcgcacaacaactcgtgtaagtggaggaagctctagaagaagaagaactccacctaggtctccaagacggcaatatcgttcctactcccggtcagtttcacctcttaggcgccactcaagggaccatggagctagggatcattatcgttcccccgtgcagtctagatcaatttcacgttctccttcaccacgcgatgaaagagactacaggcggtccccaagttctagggagaatggacggagtccacgtgatgagagggactacagtagatccccaagtccaagggataacggtcaggatctgcgtgatgagagagtctatgcacctagcaggttaaggagtccaaggggtaataggcacagtcctacgtcacgctcacggtcatacagtcctcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

196

Amino Acids

23.26

Weight (kDa)

11.56

Isoelectric Point (pI)

111.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	513
AccB1I	GGYRCC	1 cut(s)	300
AccII	CGCG	1 cut(s)	384
AciI	CCGC	2 cut(s)	98, 403
AclWI	GGATC	3 cut(s)	336, 456, 498
AcvI	CACGTG	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	301
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	3 cut(s)	46, 279, 310
AgsI	TTSAA	1 cut(s)	17
AjiI	CACGTC	1 cut(s)	140
AluBI	AGCT	3 cut(s)	34, 222, 323
AluI	AGCT	3 cut(s)	34, 222, 323
Alw26I	GTCTC	2 cut(s)	255, 387
AlwI	GGATC	3 cut(s)	336, 456, 498
AlwNI	CAGNNNCTG	1 cut(s)	493
ApeKI	GCWGC	2 cut(s)	7, 95
AseI	ATTAAT	1 cut(s)	26
AspA2I	CCTAGG	1 cut(s)	245
AspLEI	GCGC	2 cut(s)	195, 303
AspS9I	GGNCC	2 cut(s)	313, 405
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	282, 369
AvaII	GGWCC	2 cut(s)	313, 405
AvrII	CCTAGG	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	300
BauI	CACGAG	1 cut(s)	204
BbrPI	CACGTG	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	275
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	255, 387
BfaI	CTAG	6 cut(s)	225, 246, 324, 354, 417, 519
BfmI	CTRYAG	2 cut(s)	397, 454
BfoI	RGCGCY	1 cut(s)	304
BfuAI	ACCTGC	1 cut(s)	513
BisI	GCNGC	2 cut(s)	8, 96
BlnI	CCTAGG	1 cut(s)	245
BlsI	GCNGC	2 cut(s)	9, 97
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	2 cut(s)	313, 405
BmgBI	CACGTC	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	313, 405
BmiI	GGNNCC	4 cut(s)	51, 302, 314, 407
BmrFI	CCNGG	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	292
BpuMI	CCSGG	1 cut(s)	280
BsaAI	YACGTR	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	301
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	5 cut(s)	53, 245, 316, 473, 536
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 279, 310
Bse8I	GATNNNNATC	1 cut(s)	333
BseDI	CCNNGG	5 cut(s)	53, 245, 316, 473, 536
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	3 cut(s)	46, 279, 310
BseMII	CTCAG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	3 cut(s)	326, 391, 464
BslI	CCNNNNNNNGG	3 cut(s)	46, 279, 310
BsmAI	GTCTC	2 cut(s)	255, 387
BsmFI	GGGAC	3 cut(s)	326, 391, 464
Bso31I	GGTCTC	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	328, 356, 461, 490
Bsp19I	CCATGG	1 cut(s)	316
BspACI	CCGC	2 cut(s)	98, 403
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	4 cut(s)	51, 302, 314, 407
BspMI	ACCTGC	1 cut(s)	513
BspPI	GGATC	3 cut(s)	336, 456, 498
BspT107I	GGYRCC	1 cut(s)	300
BspTNI	GGTCTC	1 cut(s)	255
BssECI	CCNNGG	5 cut(s)	53, 245, 316, 473, 536
BssMI	GATC	4 cut(s)	328, 356, 461, 490
BssNI	GRCGYC	1 cut(s)	301
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	4 cut(s)	245, 316, 473, 536
Bst2BI	CACGAG	1 cut(s)	204
Bst4CI	ACNGT	6 cut(s)	80, 458, 485, 554, 573, 581
BstACI	GRCGYC	1 cut(s)	301
BstBAI	YACGTR	1 cut(s)	440
BstDEI	CTNAG	2 cut(s)	162, 296
BstDSI	CCRYGG	2 cut(s)	53, 316
BstFNI	CGCG	1 cut(s)	384
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	195, 303
BstKTI	GATC	4 cut(s)	331, 359, 464, 493
BstMAI	GTCTC	2 cut(s)	255, 387
BstMBI	GATC	4 cut(s)	328, 356, 461, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 101
BstSCI	CCNGG	1 cut(s)	278
BstSFI	CTRYAG	2 cut(s)	397, 454
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	107
BstX2I	RGATCY	2 cut(s)	461, 490
BstYI	RGATCY	2 cut(s)	461, 490
BtgI	CCRYGG	2 cut(s)	53, 316
BtgZI	GCGATG	1 cut(s)	399
BtrI	CACGTC	1 cut(s)	140
BveI	ACCTGC	1 cut(s)	513
CaiI	CAGNNNCTG	1 cut(s)	493
CfoI	GCGC	2 cut(s)	195, 303
Cfr13I	GGNCC	2 cut(s)	313, 405
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	6 cut(s)	34, 52, 60, 66, 222, 323
CviKI_1	RGCY	6 cut(s)	34, 52, 60, 66, 222, 323
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	2 cut(s)	162, 296
DinI	GGCGCC	1 cut(s)	302
DpnI	GATC	4 cut(s)	330, 358, 463, 492
DpnII	GATC	4 cut(s)	328, 356, 461, 490
Eco130I	CCWWGG	4 cut(s)	245, 316, 473, 536
Eco31I	GGTCTC	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	313, 405
Eco72I	CACGTG	1 cut(s)	440
EcoT14I	CCWWGG	4 cut(s)	245, 316, 473, 536
EgeI	GGCGCC	1 cut(s)	302
EheI	GGCGCC	1 cut(s)	302
ErhI	CCWWGG	4 cut(s)	245, 316, 473, 536
FaeI	CATG	1 cut(s)	320
FaiI	YATR	7 cut(s)	23, 45, 84, 123, 318, 513, 577
FaqI	GGGAC	3 cut(s)	326, 391, 464
FatI	CATG	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	8, 96
Fsp4HI	GCNGC	2 cut(s)	8, 96
FspAI	RTGCGCAY	1 cut(s)	194
FspBI	CTAG	6 cut(s)	225, 246, 324, 354, 417, 519
FspI	TGCGCA	1 cut(s)	194
GlaI	GCGC	2 cut(s)	194, 302
GluI	GCNGC	2 cut(s)	8, 96
HaeII	RGCGCY	1 cut(s)	304
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	2 cut(s)	195, 303
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	2 cut(s)	193, 301
HinP1I	GCGC	2 cut(s)	193, 301
HinfI	GANTC	3 cut(s)	433, 507, 532
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	2 cut(s)	282, 369
Hpy166II	GTNNAC	2 cut(s)	137, 437
Hpy188III	TCNNGA	3 cut(s)	225, 354, 488
Hpy8I	GTNNAC	2 cut(s)	137, 437
HpyAV	CCTTC	1 cut(s)	384
HpyCH4III	ACNGT	6 cut(s)	80, 458, 485, 554, 573, 581
HpyCH4IV	ACGT	4 cut(s)	139, 367, 439, 560
HpyCH4V	TGCA	4 cut(s)	10, 86, 349, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 101
HpyF3I	CTNAG	2 cut(s)	162, 296
HpySE526I	ACGT	4 cut(s)	139, 367, 439, 560
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	2 cut(s)	193, 301
KasI	GGCGCC	1 cut(s)	300
Kzo9I	GATC	4 cut(s)	328, 356, 461, 490
LmnI	GCTCC	2 cut(s)	49, 320
LpnPI	CCDG	4 cut(s)	293, 385, 473, 508
Lsp1109I	GCAGC	1 cut(s)	107
MaeI	CTAG	6 cut(s)	225, 246, 324, 354, 417, 519
MaeII	ACGT	4 cut(s)	139, 367, 439, 560
MaeIII	GTNAC	1 cut(s)	561
MalI	GATC	4 cut(s)	330, 358, 463, 492
MboI	GATC	4 cut(s)	328, 356, 461, 490
MboII	GAAGA	3 cut(s)	240, 243, 246
MflI	RGATCY	2 cut(s)	461, 490
MluCI	AATT	3 cut(s)	11, 27, 360
Mly113I	GGCGCC	1 cut(s)	301
MlyI	GAGTC	3 cut(s)	442, 516, 541
MnlI	CCTC	5 cut(s)	82, 157, 209, 303, 441
MseI	TTAA	3 cut(s)	26, 30, 527
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	280
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	92, 101
NarI	GGCGCC	1 cut(s)	301
NciI	CCSGG	1 cut(s)	280
NcoI	CCATGG	1 cut(s)	316
NdeII	GATC	4 cut(s)	328, 356, 461, 490
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	4 cut(s)	51, 302, 314, 407
NmuCI	GTSAC	1 cut(s)	561
NsbI	TGCGCA	1 cut(s)	194
PacI	TTAATTAA	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	2 cut(s)	265, 436
PflFI	GACNNNGTC	1 cut(s)	432
PkrI	GCNGC	2 cut(s)	9, 97
PleI	GAGTC	3 cut(s)	441, 515, 540
PluTI	GGCGCC	1 cut(s)	304
PmaCI	CACGTG	1 cut(s)	440
PmlI	CACGTG	1 cut(s)	440
PpsI	GAGTC	3 cut(s)	441, 515, 540
Ppu21I	YACGTR	1 cut(s)	440
PshBI	ATTAAT	1 cut(s)	26
PspCI	CACGTG	1 cut(s)	440
PspN4I	GGNNCC	4 cut(s)	51, 302, 314, 407
PspPI	GGNCC	2 cut(s)	313, 405
PstNI	CAGNNNCTG	1 cut(s)	493
PsuI	RGATCY	2 cut(s)	461, 490
PsyI	GACNNNGTC	1 cut(s)	432
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SaqAI	TTAA	3 cut(s)	26, 30, 527
SatI	GCNGC	2 cut(s)	8, 96
Sau3AI	GATC	4 cut(s)	328, 356, 461, 490
Sau96I	GGNCC	2 cut(s)	313, 405
SchI	GAGTC	3 cut(s)	442, 516, 541
ScrFI	CCNGG	1 cut(s)	280
SfcI	CTRYAG	2 cut(s)	397, 454
SfoI	GGCGCC	1 cut(s)	302
SinI	GGWCC	2 cut(s)	313, 405
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	3 cut(s)	11, 27, 360
SsiI	CCGC	2 cut(s)	98, 403
SspDI	GGCGCC	1 cut(s)	300
SspMI	CTAG	6 cut(s)	225, 246, 324, 354, 417, 519
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	4 cut(s)	245, 316, 473, 536
TaaI	ACNGT	6 cut(s)	80, 458, 485, 554, 573, 581
TaiI	ACGT	4 cut(s)	142, 370, 442, 563
TasI	AATT	3 cut(s)	11, 27, 360
Tru1I	TTAA	3 cut(s)	26, 30, 527
Tru9I	TTAA	3 cut(s)	26, 30, 527
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	2 cut(s)	7, 95
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	2 cut(s)	131, 402
TspGWI	ACGGA	1 cut(s)	445
Tth111I	GACNNNGTC	1 cut(s)	432
VpaK11BI	GGWCC	2 cut(s)	313, 405
VspI	ATTAAT	1 cut(s)	26
XbaI	TCTAGA	2 cut(s)	224, 353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	245
XspI	CTAG	6 cut(s)	225, 246, 324, 354, 417, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.